SSBD - SSBD:database - Project list

Projects

Project

Release, Updated

Organism(s)

Datatype

# of images

# of quantitative data

Paper information

Project 255-Koganezawa-CellDyn

Release, Updated 2024-01-23

Organism(s) Escherichia coli

DataType(s) response to xenobiotic stimulus, cell division, cell growth

# of image datasets 414
size of image datasets 3.1 TB

# of quantitative datasets 0
# of quantitative datasets 0 bytes

Paper information Koganezawa Y et. al. (2022), Elife 11
doi: 10.7554/eLife.74486
pmid: 35535492

Project 331-Shimojo-MouseBrainAnatomicalRegion

Release, Updated 2023-12-24

Organism(s) Mus musculus

DataType(s) nervous system development

# of image datasets 0
size of image datasets 0 bytes

# of quantitative datasets 84
# of quantitative datasets 52.4 GB

Paper information Shimojo,Yuki et. al. (2024), IPSJ Transactions on Bioinformatics 17(), 33-39
doi: 10.2197/ipsjtbio.17.33

Project 268-Oishi-VesselClassification

Release, Updated 2023-09-01

Organism(s) Mus musculus

DataType(s) laminin binding

# of image datasets 21
size of image datasets 8.1 GB

# of quantitative datasets 0
# of quantitative datasets 0 bytes

Paper information Oishi M et. al. (2022), Glia
doi: 10.1002/glia.24273
pmid: 36165697

Project 277-Matsuura-Suzuki-CryoEM

Release, Updated 2023-08-30

Organism(s) Homo sapiens

DataType(s) ribosome

# of image datasets 2
size of image datasets 1.1 TB

# of quantitative datasets 0
# of quantitative datasets 0 bytes

Paper information Matsuura-Suzuki E et. al. (2022), Elife 11
doi: 10.7554/eLife.72780
pmid: 35674491

Project 254-Seita-GrowthDyn

Release, Updated 2023-08-29

Organism(s) Mus musculus

DataType(s) growth, cell division

# of image datasets 146
size of image datasets 248.4 GB

# of quantitative datasets 0
# of quantitative datasets 0 bytes

Paper information Seita A et. al. (2021), PLoS One 16(2), e0236534
doi: 10.1371/journal.pone.0236534
pmid: 33524064

Project 272-Yoshida-EGFRSignalingDyn SSBD:repository:
ssbd-repos-000272

Release, Updated 2023-08-29

Organism(s) Drosophila melanogaster

DataType(s) MAP kinase activity, epidermal growth factor receptor activity

# of image datasets 28
size of image datasets 73.6 GB

# of quantitative datasets 0
# of quantitative datasets 0 bytes

Paper information Yoshida K and Hayashi S (2023), Development 150(5)
doi: 10.1242/dev.201231
pmid: 36897356

Project 267-Sugiura-CellDyn

Release, Updated 2023-07-20

Organism(s) Homo sapiens

DataType(s) -

# of image datasets 1
size of image datasets 202.7 MB

# of quantitative datasets 0
# of quantitative datasets 0 bytes

Paper information Sugiura K and Nagai T (2022), Commun Biol 5
doi: 10.1038/s42003-022-04153-7
pmid: 36329112

Project 269-Wang-CellPhysicalDyn

Release, Updated 2023-07-20

Organism(s) Homo sapiens, Mus musculus

DataType(s) cell surface

# of image datasets 33
size of image datasets 227.1 MB

# of quantitative datasets 0
# of quantitative datasets 0 bytes

Paper information Wang D et. al. (2022), Biomaterials 280, 121256
doi: 10.1016/j.biomaterials.2021.121256
pmid: 34794825

Project 275-Sasaki-HistonDyn

Release, Updated 2023-07-20,
2023-08-02 (errata)

Organism(s) Mus musculus, Homo sapiens, Chlorocebus pygerythrus

DataType(s) H3K9me3 modified histone binding

# of image datasets 13
size of image datasets 1.3 GB

# of quantitative datasets 0
# of quantitative datasets 0 bytes

Paper information Sasaki K et. al. (2022), Cell Chem Biol 29(7), 1153-1161.e5
doi: 10.1016/j.chembiol.2022.05.006
pmid: 35728598

Project 279-Suzuki-CaspaseActivity

Release, Updated 2023-07-20

Organism(s) Homo sapiens

DataType(s) cysteine-type endopeptidase activity involved in apoptotic process, cysteine-type endopeptidase activity

# of image datasets 14
size of image datasets 5.6 GB

# of quantitative datasets 0
# of quantitative datasets 0 bytes

Paper information Suzuki M et. al. (2022), Sci Rep 12(1), 21160
doi: 10.1038/s41598-022-25286-z
pmid: 36476686

Project 283-Kanadome-CellAdhesion

Release, Updated 2023-07-20

Organism(s) Homo sapiens

DataType(s) cell-cell adhesion mediator activity, cadherin binding involved in cell-cell adhesion

# of image datasets 2
size of image datasets 28.6 MB

# of quantitative datasets 0
# of quantitative datasets 0 bytes

Paper information Kanadome T et. al. (2022), Commun Biol 5(1), 1065
doi: 10.1038/s42003-022-04023-2
pmid: 36207396

Project 291-Deguchi-SARS-CoV2

Release, Updated 2023-07-20

Organism(s) Homo sapiens

DataType(s) viral gene expression, cellular response to virus

# of image datasets 8
size of image datasets 5.9 MB

# of quantitative datasets 0
# of quantitative datasets 0 bytes

Paper information Deguchi S et. al. (2023), PNAS Nexus 2(3), pgad029
doi: 10.1093/pnasnexus/pgad029
pmid: 36896132

Project 294-Asamitsu-DNAPTP6Dyn

Release, Updated 2023-07-20

Organism(s) Mus musculus

DataType(s) ribonucleoprotein complex binding

# of image datasets 5
size of image datasets 1.1 GB

# of quantitative datasets 0
# of quantitative datasets 0 bytes

Paper information Asamitsu S et. al. (2023), Sci Adv 9(8), eade2035
doi: 10.1126/sciadv.ade2035
pmid: 36827365

Project 295-Katoh-CiliumDyn

Release, Updated 2023-07-20

Organism(s) Mus musculus

DataType(s) detection of nodal flow, calcium-mediated signaling, determination of left/right symmetry

# of image datasets 18
size of image datasets 19.1 GB

# of quantitative datasets 0
# of quantitative datasets 0 bytes

Paper information Katoh TA et. al. (2023), Science 379(6627), 66-71
doi: 10.1126/science.abq8148
pmid: 36603091

Project 274-Aini-MitochondrialDyn

Release, Updated 2023-05-29

Organism(s) Oryza sativa temperate japonica subgroup

DataType(s) mitochondrion distribution

# of image datasets 34
size of image datasets 179.4 MB

# of quantitative datasets 0
# of quantitative datasets 0 bytes

Paper information Aini H et. al. (2022), Plant Reprod 35(1), 47-60
doi: 10.1007/s00497-021-00430-3
pmid: 34633536

Project 214-Arata-BehavioralActivity SSBD:repository:
ssbd-repos-000214

Release, Updated 2023-05-11

Organism(s) Caenorhabditis elegans

DataType(s) behavior

# of image datasets 5
size of image datasets 34.9 GB

# of quantitative datasets 0
# of quantitative datasets 0 bytes

Paper information Arata Y et. al. (2022), Sci Rep 12(1), 10481
doi: 10.1038/s41598-022-13022-6
pmid: 35729173

Project 246-Hung-CircadianRhythm

Release, Updated 2023-05-11

Organism(s) Mus musculus

DataType(s) circadian rhythm, wakefulness, circadian sleep/wake cycle

# of image datasets 4
size of image datasets 157.2 GB

# of quantitative datasets 0
# of quantitative datasets 0 bytes

Paper information Hung CJ et. al. (2021), Front Neurosci 15, 808754
doi: 10.3389/fnins.2021.808754
pmid: 35250437

Project 258-Oginuma-EmbryoDev

Release, Updated 2023-05-11

Organism(s) Nothobranchius furzeri

DataType(s) CRISPR-cas system

# of image datasets 1
size of image datasets 50.0 MB

# of quantitative datasets 0
# of quantitative datasets 0 bytes

Paper information Oginuma M et. al. (2022), Sci Rep 12(1), 11628
doi: 10.1038/s41598-022-15972-3
pmid: 35804091

Project 271-Tanaka-FilamentDev

Release, Updated 2023-05-11,
2023-05-29 (errata)

Organism(s) Homo sapiens

DataType(s) stamen filament development

# of image datasets 3
size of image datasets 1.7 GB

# of quantitative datasets 0
# of quantitative datasets 0 bytes

Paper information Tanaka A et. al. (2022), PLoS Biol 20(9), e3001780
doi: 10.1371/journal.pbio.3001780
pmid: 36067153

Project 281-Kogure-EmbryoDev

Release, Updated 2023-05-11

Organism(s) Ciona robusta

DataType(s) embryo development

# of image datasets 1
size of image datasets 470.3 MB

# of quantitative datasets 0
# of quantitative datasets 0 bytes

Paper information Kogure YS et. al. (2022), Development 149(21)
doi: 10.1242/dev.200215
pmid: 36227591

Project 296-Kawabata-MouseBrainShape

Release, Updated 2023-05-09,
2023-05-29 (errata)

Organism(s) Mus musculus

DataType(s) nervous system development

# of image datasets 0
size of image datasets 0 bytes

# of quantitative datasets 168
# of quantitative datasets 100.2 GB

Paper information Kawabata, Hiroto et. al. (2023), 1-7
doi: https://doi.org/10.1145/3620679.3620680

Project 257-Kubota-ERKActivity

Release, Updated 2023-03-22

Organism(s) Homo sapiens

DataType(s) MAP kinase activity

# of image datasets 3
size of image datasets 141.6 MB

# of quantitative datasets 0
# of quantitative datasets 0 bytes

Paper information Kubota Y et. al. (2022), Nat Commun 13(1), 4063
doi: 10.1038/s41467-022-31690-w
pmid: 35831322

Project 259-Lu-TemperatureDyn

Release, Updated 2023-03-22

Organism(s) Homo sapiens

DataType(s) heat dissipation, cellular response to temperature stimulus

# of image datasets 5
size of image datasets 3.8 GB

# of quantitative datasets 0
# of quantitative datasets 0 bytes

Paper information Lu K et. al. (2022), Nano Lett 22(14), 5698-5707
doi: 10.1021/acs.nanolett.2c00608
pmid: 35792763

Project 219-Konishi-CalciumIonDyn

Release, Updated 2023-02-21

Organism(s) Mus musculus, Canis lupus familiaris

DataType(s) G protein-coupled receptor binding

# of image datasets 170
size of image datasets 81.4 GB

# of quantitative datasets 0
# of quantitative datasets 0 bytes

Paper information Konishi Y et. al. (2021), Cancer Res 81(15), 4124-4132
doi: 10.1158/0008-5472.CAN-20-4245
pmid: 34035084

Project 220-Imanishi-ROCKActivity

Release, Updated 2023-02-16

Organism(s) Mus musculus

DataType(s) Rho-dependent protein serine/threonine kinase activity

# of image datasets 134
size of image datasets 17.1 GB

# of quantitative datasets 0
# of quantitative datasets 0 bytes

Paper information Imanishi A et. al. (2021), Am J Pathol 191(1), 194-203
doi: 10.1016/j.ajpath.2020.09.012
pmid: 33069718

Project 237-Jin-CellDynamics SSBD:repository:
ssbd-repos-000237

Release, Updated 2023-02-16

Organism(s) Mus musculus

DataType(s) -

# of image datasets 1354
size of image datasets 784.8 MB

# of quantitative datasets 0
# of quantitative datasets 0 bytes

Paper information Jin J et. al. (2023), Proc Natl Acad Sci U S A 120(1), e2210283120
doi: 10.1073/pnas.2210283120
pmid: 36577074

Project 244-Tokuoka-Embryogenesis

Release, Updated 2023-02-02

Organism(s) Mus musculus

DataType(s) embryo development

# of image datasets 2
size of image datasets 250.8 MB

# of quantitative datasets 0
# of quantitative datasets 0 bytes

Paper information Tokuoka Y et. al. (2020), NPJ Syst Biol Appl 6(1), 32
doi: 10.1038/s41540-020-00152-8
pmid: 33082352

Project 245-Hirasawa-OR-PAM

Release, Updated 2022-12-13

Organism(s) Homo sapiens

DataType(s) -

# of image datasets 5
size of image datasets 14.8 MB

# of quantitative datasets 0
# of quantitative datasets 0 bytes

Paper information Hirasawa T et. al. (2022), Photoacoustics 26, 100364
doi: 10.1016/j.pacs.2022.100364
pmid: 35574189

Project 247-Adhitama-Embryogenesis

Release, Updated 2022-12-13

Organism(s) Daphnia magna

DataType(s) embryo development

# of image datasets 4
size of image datasets 75.2 MB

# of quantitative datasets 0
# of quantitative datasets 0 bytes

Paper information Adhitama N et. al. (2020), PLoS One 15(10), e0239893
doi: 10.1371/journal.pone.0239893
pmid: 33035251

Project 253-Shimauchi-CalciumIonDyn

Release, Updated 2022-11-30

Organism(s) Homo sapiens

DataType(s) response to calcium ion

# of image datasets 13
size of image datasets 575.5 MB

# of quantitative datasets 0
# of quantitative datasets 0 bytes

Paper information Shimauchi T et. al. (2022), Cells 11(13)
doi: 10.3390/cells11132041
pmid: 35805125

Project 231-Asakura-ERKactivation

Release, Updated 2022-11-25

Organism(s) Canis lupus familiaris

DataType(s) MAP kinase activity

# of image datasets 1
size of image datasets 179.5 MB

# of quantitative datasets 0
# of quantitative datasets 0 bytes

Paper information Asakura Y et. al. (2021), Sci Rep 11(1), 4069
doi: 10.1038/s41598-021-83396-6
pmid: 33603023

Project 163-Wang-MitochondrialDyn

Release, Updated 2022-11-23

Organism(s) Homo sapiens

DataType(s) mitochondrial fusion

# of image datasets 10
size of image datasets 388.7 MB

# of quantitative datasets 0
# of quantitative datasets 0 bytes

Paper information Wang C et. al. (2019), Proc Natl Acad Sci U S A 116(32), 15817-15822
doi: 10.1073/pnas.1905924116
pmid: 31337683

Project 186-Tsuboi-TumorDyn

Release, Updated 2022-11-23

Organism(s) Homo sapiens, Mus musculus

DataType(s) apoptosis

# of image datasets 29
size of image datasets 86.4 MB

# of quantitative datasets 0
# of quantitative datasets 0 bytes

Paper information Tsuboi S and Jin T (2020), RSC Adv 10(63), 38244-38250
doi: 10.1039/d0ra06495e
pmid: 35517522

Project 187-Tsuboi-TumorDyn

Release, Updated 2022-11-23

Organism(s) Homo sapiens, Mus musculus

DataType(s) tumor suppressor

# of image datasets 5
size of image datasets 26.1 MB

# of quantitative datasets 0
# of quantitative datasets 0 bytes

Paper information Tsuboi S and Jin T (2020), RSC Adv 10(47), 28171-28179
doi: 10.1039/d0ra04710d
pmid: 35519107

Project 197-Bannai-CalciumIonSignaling

Release, Updated 2022-11-23,
2023-02-16 (errata)

Organism(s) Rattus norvegicus, Homo sapiens, Mus musculus

DataType(s) calcium ion signaling

# of image datasets 7
size of image datasets 894.0 MB

# of quantitative datasets 0
# of quantitative datasets 0 bytes

Paper information Bannai H et. al. (2019), J Vis Exp(145)
doi: 10.3791/59246
pmid: 30958464

Project 199-Ichimura-MulticellularDyn SSBD:repository:
ssbd-repos-000199

Release, Updated 2022-11-23

Organism(s) Homo sapiens, Mus musculus, Canis lupus familiaris, Dictyostelium discoideum

DataType(s) cAMP-mediated signaling, calcium-mediated signaling

# of image datasets 7
size of image datasets 527.2 GB

# of quantitative datasets 0
# of quantitative datasets 0 bytes

Paper information Ichimura T et. al. (2021), Sci Rep 11(1), 16539
doi: 10.1038/s41598-021-95930-7
pmid: 34400683 Ichimura, T. et. al. (2021/01/01), 2020.06.29.179044
doi: 10.1101/2020.06.29.179044

Project 209-Kimura-SkinMorphology

Release, Updated 2022-11-23

Organism(s) Homo sapiens

DataType(s) skin epidermis development

# of image datasets 2
size of image datasets 1.2 GB

# of quantitative datasets 0
# of quantitative datasets 0 bytes

Paper information Kimura S et. al. (2020), Commun Biol 3(1), 637
doi: 10.1038/s42003-020-01365-7
pmid: 33127987

Project 210-Takeo-HFregeneration

Release, Updated 2022-11-23

Organism(s) Mus musculus

DataType(s) hair follicle development

# of image datasets 8
size of image datasets 377.2 MB

# of quantitative datasets 0
# of quantitative datasets 0 bytes

Paper information Takeo M et. al. (2021), Sci Rep 11(1), 1173
doi: 10.1038/s41598-020-80624-3
pmid: 33568688

Project 218-Tanaka-CellSignallingDyn

Release, Updated 2022-11-23

Organism(s) Mus musculus

DataType(s) IFN binding, interferon-gamma binding

# of image datasets 32
size of image datasets 5.6 GB

# of quantitative datasets 0
# of quantitative datasets 0 bytes

Paper information Tanaka T et. al. (2021), Cell Struct Funct 46(2), 103-111
doi: 10.1247/csf.21052
pmid: 34744115

Project 222-Dodo-RamanImaging SSBD:repository:
ssbd-repos-000222

Release, Updated 2022-11-23

Organism(s) Homo sapiens

DataType(s) metabolic process

# of image datasets 12
size of image datasets 4.6 MB

# of quantitative datasets 0
# of quantitative datasets 0 bytes

Paper information Dodo K et. al. (2021), Chem Commun (Camb) 57(17), 2180-2183
doi: 10.1039/d0cc07824g
pmid: 33527102

Project 224-Kamada-MitosisDyn

Release, Updated 2022-11-23

Organism(s) Nicotiana tabacum, Homo sapiens

DataType(s) cell division, mitotic cell cycle

# of image datasets 8
size of image datasets 7.4 GB

# of quantitative datasets 0
# of quantitative datasets 0 bytes

Paper information Kamada T et. al. (2022), Sci Rep 12(1), 809
doi: 10.1038/s41598-021-04543-7
pmid: 35039530

Project 225-Seiriki-WholeBrainDev

Release, Updated 2022-11-23

Organism(s) Mus musculus

DataType(s) brain development

# of image datasets 415
size of image datasets 3.2 TB

# of quantitative datasets 0
# of quantitative datasets 0 bytes

Paper information Seiriki K et. al. (2019), Nat Protoc 14(5), 1509-1529
doi: 10.1038/s41596-019-0148-4
pmid: 30962606

Project 226-Matsumura-WholeBrainDev

Release, Updated 2022-11-23

Organism(s) Mus musculus

DataType(s) brain development

# of image datasets 490
size of image datasets 2.2 TB

# of quantitative datasets 0
# of quantitative datasets 0 bytes

Paper information Matsumura K et. al. (2020), Nat Commun 11
doi: 10.1038/s41467-020-14697-z
pmid: 32103003

Project 227-Egoshi-RamanImaging SSBD:repository:
ssbd-repos-000227

Release, Updated 2022-11-23

Organism(s) Homo sapiens

DataType(s) -

# of image datasets 20
size of image datasets 3.7 MB

# of quantitative datasets 0
# of quantitative datasets 0 bytes

Paper information Egoshi S et. al. (2021), Org Biomol Chem 19(38), 8232-8236
doi: 10.1039/d1ob01479j
pmid: 34528645

Project 228-Kanadome-CellInteration

Release, Updated 2022-11-23

Organism(s) Homo sapiens

DataType(s) homophilic cell adhesion via plasma membrane adhesion molecules

# of image datasets 8
size of image datasets 1.1 GB

# of quantitative datasets 0
# of quantitative datasets 0 bytes

Paper information Kanadome T et. al. (2021), Sci Rep 11(1), 22237
doi: 10.1038/s41598-021-01481-2
pmid: 34782670

Project 229-Yamada-GeneExpression

Release, Updated 2022-11-23

Organism(s) Mus musculus, Homo sapiens

DataType(s) translation activator activity

# of image datasets 4
size of image datasets 1.8 GB

# of quantitative datasets 0
# of quantitative datasets 0 bytes

Paper information Yamada M et. al. (2020), iScience 23(9), 101506
doi: 10.1016/j.isci.2020.101506
pmid: 32919371

Project 233-Nishiyama-CellDyn

Release, Updated 2022-11-23

Organism(s) Homo sapiens

DataType(s) G protein-coupled receptor kinase activity

# of image datasets 41
size of image datasets 90.9 MB

# of quantitative datasets 0
# of quantitative datasets 0 bytes

Paper information Nishiyama K et. al. (2022), Sci Signal 15(716), eabj0644
doi: 10.1126/scisignal.abj0644
pmid: 35015570

Project 234-Kobayashi-ChemotaxisDyn

Release, Updated 2022-11-23

Organism(s) Notocomplana humilis

DataType(s) chemotaxis

# of image datasets 6
size of image datasets 3.4 GB

# of quantitative datasets 0
# of quantitative datasets 0 bytes

Paper information Kobayashi A et. al. (2022), Sci Adv 8(9), eabk0331
doi: 10.1126/sciadv.abk0331
pmid: 35245108

Project 235-Hattori-SmartphoneBioImaging

Release, Updated 2022-11-23

Organism(s) Homo sapiens

DataType(s) bioluminescence

# of image datasets 4
size of image datasets 13.0 MB

# of quantitative datasets 0
# of quantitative datasets 0 bytes

Paper information Hattori M et. al. (2020), Sensors (Basel) 20(24)
doi: 10.3390/s20247166
pmid: 33327525

Project 239-Miyamoto-MitochondrialDyn

Release, Updated 2022-11-23

Organism(s) Homo sapiens

DataType(s) mitochondrial chromosome

# of image datasets 1
size of image datasets 160.5 MB

# of quantitative datasets 0
# of quantitative datasets 0 bytes

Paper information Miyamoto T et. al. (2021), STAR Protoc 2(3), 100721
doi: 10.1016/j.xpro.2021.100721
pmid: 34401787

Project 240-Yoshizawa-MitosisDyn

Release, Updated 2022-11-23

Organism(s) Homo sapiens

DataType(s) mitotic cell cycle

# of image datasets 3
size of image datasets 74.3 GB

# of quantitative datasets 0
# of quantitative datasets 0 bytes

Paper information Yoshizawa K et. al. (2020), Front Cell Dev Biol 8, 721
doi: 10.3389/fcell.2020.00721
pmid: 32850837

Project 241-Vu-TemperatureDyn

Release, Updated 2022-11-23

Organism(s) Homo sapiens

DataType(s) cellular response to ionomycin, cellular response to heating, heat transoport into cells from a micrometer-sized heat supply, response to ionomycin

# of image datasets 5
size of image datasets 118.6 MB

# of quantitative datasets 0
# of quantitative datasets 0 bytes

Paper information Vu CQ et. al. (2021), Sci Rep 11(1), 16519
doi: 10.1038/s41598-021-96049-5
pmid: 34389773

Project 242-Wazawa-CellDyn

Release, Updated 2022-11-23

Organism(s) Homo sapiens, Cercopithecidae

DataType(s) Actin filament dynamics, mitochondrial fusion, mitochondrial fission, Photoswitching of Kohinoor 2.0, Photobleaching of Kohinoor 2.0

# of image datasets 16
size of image datasets 2.8 GB

# of quantitative datasets 0
# of quantitative datasets 0 bytes

Paper information Wazawa T et. al. (2021), Microscopy (Oxf) 70(4), 340-352
doi: 10.1093/jmicro/dfab001
pmid: 33481018

Project 140-Hirata-MouseBrainSlice SSBD:repository:
ssbd-repos-000140

Release, Updated 2022-04-15

Organism(s) Mus musculus

DataType(s) nervous system development

# of image datasets 84
size of image datasets 1.6 TB

# of quantitative datasets 0
# of quantitative datasets 0 bytes

Paper information Hirata T et. al. (2021), Cell Rep Methods 1(3), 100012
doi: 10.1016/j.crmeth.2021.100012
pmid: 35474959

Project 131-Wen-NeuronalNucDyn SSBD:repository:
ssbd-repos-000131

Release, Updated 2022-03-31

Organism(s) Caenorhabditis elegans

DataType(s) nucleus localization

# of image datasets 6
size of image datasets 9.2 GB

# of quantitative datasets 1
# of quantitative datasets 12.9 MB

Paper information Wen C et. al. (2021), Elife 10
doi: 10.7554/eLife.59187
pmid: 33781383

Project 138-Ito-SPBDyn

Release, Updated 2022-03-31

Organism(s) Schizosaccharomyces pombe

DataType(s) oscillatory muscle contraction

# of image datasets 5
size of image datasets 62.8 GB

# of quantitative datasets 0
# of quantitative datasets 0 bytes

Paper information Ito H et. al. (2019), Biochem Biophys Res Commun 511(4), 820-825
doi: 10.1016/j.bbrc.2019.02.128
pmid: 30846209

Project 164-Ono-NeuPMCA

Release, Updated 2022-03-31

Organism(s) Mus musculus

DataType(s) synaptic vesicle recycling

# of image datasets 2
size of image datasets 145.4 MB

# of quantitative datasets 0
# of quantitative datasets 0 bytes

Paper information Ono Y et. al. (2019), Sci Rep 9(1), 4289
doi: 10.1038/s41598-019-40557-y
pmid: 30862855

Project 170-Tsutsui-HookBM SSBD:repository:
ssbd-repos-000170

Release, Updated 2022-03-31

Organism(s) Mus musculus

DataType(s) basement membrane

# of image datasets 1
size of image datasets 236.6 MB

# of quantitative datasets 0
# of quantitative datasets 0 bytes

Paper information Tsutsui K et. al. (2021), Nat Commun 12(1), 2577
doi: 10.1038/s41467-021-22881-y
pmid: 33972551

Project 172-Yoshida-ERKTracheaDev SSBD:repository:
ssbd-repos-000172

Release, Updated 2022-03-31

Organism(s) Mus musculus

DataType(s) MAP kinase activity

# of image datasets 2
size of image datasets 62.2 GB

# of quantitative datasets 0
# of quantitative datasets 0 bytes

Paper information Yoshida T et. al. (2020), Front Cell Dev Biol 8, 585640
doi: 10.3389/fcell.2020.585640
pmid: 33195234

Project 177-Kinjo-cAMPsignalingDyn

Release, Updated 2022-03-31

Organism(s) Mus musculus, Homo sapiens, Canis lupus familiaris

DataType(s) cAMP-mediated signaling

# of image datasets 112
size of image datasets 4.3 GB

# of quantitative datasets 0
# of quantitative datasets 0 bytes

Paper information Kinjo T et. al. (2020), ACS Chem Biol 15(11), 2848-2853
doi: 10.1021/acschembio.0c00333
pmid: 33074647

Project 178-konagaya-CellMigration

Release, Updated 2022-03-31

Organism(s) Mus musculus

DataType(s) extracellular signal-regulated kinase activity

# of image datasets 160
size of image datasets 55.5 GB

# of quantitative datasets 0
# of quantitative datasets 0 bytes

Paper information Konagaya Y et. al. (2020), Cell Cycle 19(22), 3167-3181
doi: 10.1080/15384101.2020.1838779
pmid: 33131406

Project 179-Kobachi-BLVRAactivity

Release, Updated 2022-03-31

Organism(s) Homo sapiens, Mus musculus

DataType(s) biliverdin reductase

# of image datasets 89
size of image datasets 2.0 GB

# of quantitative datasets 0
# of quantitative datasets 0 bytes

Paper information Kobachi K et. al. (2020), Cell Struct Funct 45(2), 131-141
doi: 10.1247/csf.20010
pmid: 32581154

Project 180-Watabe-Biosensoractivity

Release, Updated 2022-03-31

Organism(s) Mus musculus, Homo sapiens, Canis lupus familiaris

DataType(s) extracellular signal-regulated kinase activity

# of image datasets 115
size of image datasets 3.9 GB

# of quantitative datasets 0
# of quantitative datasets 0 bytes

Paper information Watabe T et. al. (2020), ACS Sens 5(3), 719-730
doi: 10.1021/acssensors.9b01941
pmid: 32101394

Project 183-Iwasaki-SpineDyn

Release, Updated 2022-03-31

Organism(s) Mus musculus

DataType(s) synapse organization, dendritic spine development

# of image datasets 34
size of image datasets 3.7 GB

# of quantitative datasets 0
# of quantitative datasets 0 bytes

Paper information Iwasaki K et. al. (2020), Eur J Neurosci 51(3), 806-821
doi: 10.1111/ejn.14634
pmid: 31793065

Project 184-Tanaka-SpineDyn

Release, Updated 2022-03-31

Organism(s) Mus musculus

DataType(s) dendritic spine

# of image datasets 11
size of image datasets 199.7 MB

# of quantitative datasets 0
# of quantitative datasets 0 bytes

Paper information Tanaka S et. al. (2020), Microscopy (Oxf) 69(1), 44-52
doi: 10.1093/jmicro/dfaa001
pmid: 31990031

Project 185-Hoshino-MyotubeCa2Signal

Release, Updated 2022-03-31

Organism(s) Mus musculus

DataType(s) myotube differentiation, calcium signaling

# of image datasets 10
size of image datasets 304.1 MB

# of quantitative datasets 0
# of quantitative datasets 0 bytes

Paper information Hoshino D et. al. (2020), iScience 23(10), 101558
doi: 10.1016/j.isci.2020.101558
pmid: 33083727

Project 188-Ipponjima-NHEKsCornification

Release, Updated 2022-03-31

Organism(s) Homo sapiens

DataType(s) mitochondrial depolarization, keratinocyte activation

# of image datasets 21
size of image datasets 265.3 GB

# of quantitative datasets 0
# of quantitative datasets 0 bytes

Paper information Ipponjima S et. al. (2020), Sci Rep 10(1), 5515
doi: 10.1038/s41598-020-62240-3
pmid: 32218450

Project 189-Kobayashi-NSCsDyn

Release, Updated 2022-03-31

Organism(s) Mus musculus

DataType(s) cell division, negative regulation of lysosomal protein catabolic process

# of image datasets 17
size of image datasets 6.8 GB

# of quantitative datasets 0
# of quantitative datasets 0 bytes

Paper information Kobayashi T et. al. (2019), Nat Commun 10(1), 5446
doi: 10.1038/s41467-019-13203-4
pmid: 31784517

Project 190-Iguchi-SpineDyn

Release, Updated 2022-03-31

Organism(s) Mus musculus

DataType(s) response to social isolation

# of image datasets 4
size of image datasets 309.2 MB

# of quantitative datasets 0
# of quantitative datasets 0 bytes

Paper information Iguchi R et. al. (2020), Neurosci Res 154, 27-34
doi: 10.1016/j.neures.2019.05.004
pmid: 31226269

Project 192-Hiroshima-SingleMolDyn

Release, Updated 2022-03-31

Organism(s) Cricetulus griseus

DataType(s) epidermal growth factor receptor binding

# of image datasets 60
size of image datasets 1.5 GB

# of quantitative datasets 0
# of quantitative datasets 0 bytes

Paper information Hiroshima M et. al. (2020), Microscopy (Oxf) 69(2), 69-78
doi: 10.1093/jmicro/dfz116
pmid: 32090254

Project 194-Obashi-SpineDyn

Release, Updated 2022-03-31

Organism(s) Mus musculus

DataType(s) NA, signaling molecule

# of image datasets 21
size of image datasets 9.4 MB

# of quantitative datasets 0
# of quantitative datasets 0 bytes

Paper information Obashi K et. al. (2019), Cell Rep 27(5), 1503-1515.e8
doi: 10.1016/j.celrep.2019.04.006
pmid: 31042476

Project 196-Sueda-GeneExpReg

Release, Updated 2022-03-31

Organism(s) Mus musculus

DataType(s) gene expression, regulation of gene expression

# of image datasets 24
size of image datasets 2.1 GB

# of quantitative datasets 0
# of quantitative datasets 0 bytes

Paper information Sueda R et. al. (2019), Genes Dev 33(9-10), 511-523
doi: 10.1101/gad.323196.118
pmid: 30862661

Project 202-Miyagawa-ChemotaxisDyn

Release, Updated 2022-03-31

Organism(s) Dictyostelium discoideum

DataType(s) chemotaxis

# of image datasets 4
size of image datasets 3.9 GB

# of quantitative datasets 0
# of quantitative datasets 0 bytes

Paper information Miyagawa T et. al. (2018), Nat Commun 9(1), 4635
doi: 10.1038/s41467-018-07035-x
pmid: 30401901

Project 203-Tanabe-SingleDyn

Release, Updated 2022-03-31

Organism(s) Dictyostelium discoideum

DataType(s) cAMP binding

# of image datasets 11
size of image datasets 254.5 MB

# of quantitative datasets 0
# of quantitative datasets 0 bytes

Paper information Tanabe Y et. al. (2018), J Cell Sci 131(23)
doi: 10.1242/jcs.214775
pmid: 30404836

Project 205-Shen-CellPatterning

Release, Updated 2022-03-31

Organism(s) Mus musculus

DataType(s) -

# of image datasets 5
size of image datasets 1.2 GB

# of quantitative datasets 0
# of quantitative datasets 0 bytes

Paper information Shen Y et. al. (2020), PLoS One 15(5), e0232518
doi: 10.1371/journal.pone.0232518
pmid: 32433673

Project 206-Miyamoto-CiliaryMorphology

Release, Updated 2022-03-31

Organism(s) Homo sapiens

DataType(s) ciliary pocket membrane, peroxisome

# of image datasets 1
size of image datasets 173.4 MB

# of quantitative datasets 0
# of quantitative datasets 0 bytes

Paper information Miyamoto T et. al. (2020), EMBO J 39(12), e103499
doi: 10.15252/embj.2019103499
pmid: 32368833

Project 207-Kuroda-FinMorphology

Release, Updated 2022-03-31

Organism(s) Danio rerio

DataType(s) basement membrane

# of image datasets 1
size of image datasets 248.1 MB

# of quantitative datasets 0
# of quantitative datasets 0 bytes

Paper information Kuroda J et. al. (2020), Front Cell Dev Biol 8, 580520
doi: 10.3389/fcell.2020.580520
pmid: 33154970

Project 211-Hiroshima-EGFRTracking

Release, Updated 2022-03-31

Organism(s) Cricetulus griseus

DataType(s) epidermal growth factor receptor binding, epidermal growth factor-activated receptor activity

# of image datasets 12
size of image datasets 31.3 GB

# of quantitative datasets 0
# of quantitative datasets 0 bytes

Paper information Hiroshima M et. al. (2018), J Mol Biol 430(9), 1386-1401
doi: 10.1016/j.jmb.2018.02.018
pmid: 29505756

Project 212-Kajikawa-GeckoEmbryos

Release, Updated 2022-03-31

Organism(s) Gekko

DataType(s) left/right axis specification

# of image datasets 3
size of image datasets 5.0 GB

# of quantitative datasets 0
# of quantitative datasets 0 bytes

Paper information Kajikawa E et. al. (2020), Nat Ecol Evol 4(2), 261-269
doi: 10.1038/s41559-019-1072-2
pmid: 31907383

Project 213-Yoshida-SpindleDyn

Release, Updated 2022-03-31

Organism(s) Mus musculus

DataType(s) meiosis I nuclear membrane disassembly

# of image datasets 16
size of image datasets 43.0 GB

# of quantitative datasets 0
# of quantitative datasets 0 bytes

Paper information Yoshida S et. al. (2020), Nat Commun 11(1), 2652
doi: 10.1038/s41467-020-16488-y
pmid: 32461611

Project 217-Sakai-iRFPactivity SSBD:repository:
ssbd-repos-000217

Release, Updated 2022-03-31

Organism(s) Schizosaccharomyces pombe, Saccharomyces cerevisiae

DataType(s) biliverdin reductase (NAD(P)+) activity

# of image datasets 8
size of image datasets 437.0 MB

# of quantitative datasets 0
# of quantitative datasets 0 bytes

Paper information Sakai K et. al. (2021), J Cell Sci 134(24)
doi: 10.1242/jcs.259315
pmid: 34806750

Project 72-Kyogoku-CytoplasmNucDyn

Release, Updated 2021-11-30

Organism(s) Mus musculus

DataType(s) cytoplasm organization, nuclear envelope breakdown, mitotic cell cycle

# of image datasets 453
size of image datasets 6.7 TB

# of quantitative datasets 0
# of quantitative datasets 0 bytes

Paper information Kyogoku H and Kitajima TS (2017), Dev Cell 41(3), 287-298.e4
doi: 10.1016/j.devcel.2017.04.009
pmid: 28486131

Project 70-Yoshida-KTMTDyn

Release, Updated 2021-09-30

Organism(s) Mus musculus

DataType(s) mitotic cell cycle

# of image datasets 265
size of image datasets 371.5 GB

# of quantitative datasets 0
# of quantitative datasets 0 bytes

Paper information Yoshida S et. al. (2015), Dev Cell 33(5), 589-602
doi: 10.1016/j.devcel.2015.04.020
pmid: 26028219

Project 120-Ding-CentromericDyn

Release, Updated 2021-09-30

Organism(s) M. musculus

DataType(s) meiotic cell cycle, centromeric sister chromatid cohesion

# of image datasets 351
size of image datasets 720.8 GB

# of quantitative datasets 0
# of quantitative datasets 0 bytes

Paper information Ding Y et. al. (2018), Curr Biol 28(10), 1661-1669.e4
doi: 10.1016/j.cub.2018.04.019
pmid: 29754905

Project 126-Imanishi-CellMorNuCyM

Release, Updated 2021-09-30

Organism(s) Mus musculus

DataType(s) plasma membrane

# of image datasets 46
size of image datasets 69.8 GB

# of quantitative datasets 0
# of quantitative datasets 0 bytes

Paper information Imanishi A et. al. (2018), Cell Struct Funct 43(2), 129-140
doi: 10.1247/csf.18013
pmid: 29962383

Project 127-Konishi-ERKDyn

Release, Updated 2021-09-30

Organism(s) Mus musculus

DataType(s) cell motility, activation of MAPERK kinase

# of image datasets 143
size of image datasets 26.4 GB

# of quantitative datasets 0
# of quantitative datasets 0 bytes

Paper information Konishi Y et. al. (2018), iScience 10, 98-113
doi: 10.1016/j.isci.2018.11.025
pmid: 30508722

Project 128-Muta-IECsERKDyn

Release, Updated 2021-09-30

Organism(s) Mus musculus

DataType(s) ERBB2-EGFR signaling pathway, ERBB2 signaling pathway, activation of MAPERK kinase, epidermal growth factor signaling pathway

# of image datasets 470
size of image datasets 62.5 GB

# of quantitative datasets 0
# of quantitative datasets 0 bytes

Paper information Muta Y et. al. (2018), Nat Commun 9(1), 2174
doi: 10.1038/s41467-018-04527-8
pmid: 29872037

Project 129-Komatsu-ERKBiosensorActivity

Release, Updated 2021-09-30

Organism(s) Mus musculus

DataType(s) activation of MAPERK kinase

# of image datasets 13
size of image datasets 6.4 GB

# of quantitative datasets 0
# of quantitative datasets 0 bytes

Paper information Komatsu N et. al. (2018), Sci Rep 8(1), 8984
doi: 10.1038/s41598-018-27174-x
pmid: 29895862

Project 130-Sano-CellMigrationDyn

Release, Updated 2021-09-30

Organism(s) Mus musculus

DataType(s) cell migration, activation of MAPERK kinase

# of image datasets 26
size of image datasets 4.5 GB

# of quantitative datasets 0
# of quantitative datasets 0 bytes

Paper information Sano T et. al. (2018), Am J Pathol 188(11), 2564-2573
doi: 10.1016/j.ajpath.2018.07.010
pmid: 30121259

Project 161-Tanaka-MEFMitochondrial

Release, Updated 2021-09-30

Organism(s) Mus musculus

DataType(s) gene expression

# of image datasets 4
size of image datasets 6.4 MB

# of quantitative datasets 0
# of quantitative datasets 0 bytes

Paper information Tanaka H et. al. (2019), J Cell Sci 132(11)
doi: 10.1242/jcs.224766
pmid: 31076512

Project 165-Kinjo-ERKactivity

Release, Updated 2021-09-30

Organism(s) Mus musculus, Canis lupus familiaris

DataType(s) extracellular signal-regulated kinase activity

# of image datasets 20
size of image datasets 1.1 GB

# of quantitative datasets 0
# of quantitative datasets 0 bytes

Paper information Kinjo T et. al. (2019), Nat Methods 16(10), 1029-1036
doi: 10.1038/s41592-019-0541-5
pmid: 31501546

Project 166-Takubo-ECsTrajectory

Release, Updated 2021-09-30

Organism(s) Mus musculus

DataType(s) endothelial cell morphogenesis

# of image datasets 5
size of image datasets 5.2 GB

# of quantitative datasets 4
# of quantitative datasets 5.4 MB

Paper information Takubo N et. al. (2019), Sci Rep 9(1), 9304
doi: 10.1038/s41598-019-45666-2
pmid: 31243314

Project 171-Ochi-Hes1DynNPCs

Release, Updated 2021-09-30

Organism(s) Mus musculus

DataType(s) translation activator activity

# of image datasets 3
size of image datasets 696.4 MB

# of quantitative datasets 0
# of quantitative datasets 0 bytes

Paper information Ochi S et. al. (2020), Development 147(4)
doi: 10.1242/dev.182204
pmid: 32094111

Project 134-Tanaka-SalivaryglandDev

Release, Updated 2020-12-23

Organism(s) Mus musculus

DataType(s) organogenesis

# of image datasets 55
size of image datasets 1.1 GB

# of quantitative datasets 0
# of quantitative datasets 0 bytes

Paper information Tanaka J et. al. (2018), Nat Commun 9(1), 4216
doi: 10.1038/s41467-018-06469-7
pmid: 30310071

Project 142-Wen-CellShape

Release, Updated 2020-12-23

Organism(s) Drosophila

DataType(s) mesodermal cell migration, ventral furrow formation

# of image datasets 4
size of image datasets 5.5 GB

# of quantitative datasets 4
# of quantitative datasets 126.1 KB

Paper information Wen FL et. al. (2017), Biophys J 112(12), 2683-2695
doi: 10.1016/j.bpj.2017.05.012
pmid: 28636924

Project 150-Abe-SomiteDev

Release, Updated 2020-12-23

Organism(s) Oryzias

DataType(s) somite development

# of image datasets 18
size of image datasets 145.4 MB

# of quantitative datasets 0
# of quantitative datasets 0 bytes

Paper information Abe K et. al. (2019), Cell Rep 27(3), 928-939.e4
doi: 10.1016/j.celrep.2019.03.068
pmid: 30995487

Project 42-Hayashi-NeuronalCellDyn SSBD:repository:
ssbd-repos-000042

Release, Updated 2019-11-20

Organism(s) Rattus novegicus

DataType(s) neuron cell dynamics

# of image datasets 0
size of image datasets 0 bytes

# of quantitative datasets 198
# of quantitative datasets 87.2 MB

Paper information Hayashi K et. al. (2018), Mol Biol Cell 29(25), 3017-3025
doi: 10.1091/mbc.E18-01-0022
pmid: 30281391

Project 66-Iwata-CellDynOSNMT SSBD:repository:
ssbd-repos-000066

Release, Updated 2019-11-20

Organism(s) M. musculus

DataType(s) calcium imaging data

# of image datasets 2403
size of image datasets 98.2 GB

# of quantitative datasets 0
# of quantitative datasets 0 bytes

Paper information Iwata R et. al. (2017), Neuron 96(5), 1139-1152.e7
doi: 10.1016/j.neuron.2017.11.008
pmid: 29216451

Project 68-Sakaguchi-NeuronFluo SSBD:repository:
ssbd-repos-000068

Release, Updated 2019-11-20

Organism(s) M. musculus

DataType(s) neuronal morphology

# of image datasets 67
size of image datasets 269.1 GB

# of quantitative datasets 0
# of quantitative datasets 0 bytes

Paper information Sakaguchi R et. al. (2018), Elife 7
doi: 10.7554/eLife.40350
pmid: 30454553

Project 86-Higashi-SynapseDyn

Release, Updated 2019-11-20

Organism(s) Mus musculus

DataType(s) synapse dynamics

# of image datasets 16
size of image datasets 1.4 GB

# of quantitative datasets 0
# of quantitative datasets 0 bytes

Paper information Higashi T et. al. (2018), Cell Rep 22(4), 919-929
doi: 10.1016/j.celrep.2017.12.101
pmid: 29386134

Project 94-Matsuda-Beetlehorn

Release, Updated 2019-11-20

Organism(s) Trypoxylus dichotomus

DataType(s) horn primordia dynamic

# of image datasets 5
size of image datasets 7.8 MB

# of quantitative datasets 0
# of quantitative datasets 0 bytes

Paper information Matsuda K et. al. (2017), Sci Rep 7(1), 13939
doi: 10.1038/s41598-017-14170-w
pmid: 29066748

Project 98-Morita-ToothEpiCellDyn

Release, Updated 2019-11-20

Organism(s) M. musculus

DataType(s) tooth epithelium deformation

# of image datasets 5
size of image datasets 12.4 GB

# of quantitative datasets 1
# of quantitative datasets 10.1 MB

Paper information Morita R et. al. (2016), PLoS One 11(9), e0161336
doi: 10.1371/journal.pone.0161336
pmid: 27588418

Project 99-Takagi-HairRegiPSCell

Release, Updated 2019-11-20

Organism(s) M. musculus

DataType(s) hair regeneration

# of image datasets 6
size of image datasets 50.2 MB

# of quantitative datasets 0
# of quantitative datasets 0 bytes

Paper information Takagi R et. al. (2016), Sci Adv 2(4), e1500887
doi: 10.1126/sciadv.1500887
pmid: 27051874

Project 100-Yamamoto-ToothDev

Release, Updated 2019-11-20

Organism(s) M. musculus

DataType(s) tooth dynamics

# of image datasets 7
size of image datasets 130.4 GB

# of quantitative datasets 0
# of quantitative datasets 0 bytes

Paper information Yamamoto N et. al. (2015), Sci Rep 5, 18393
doi: 10.1038/srep18393
pmid: 26673152

Project 101-Oshima-ToothBioImplant

Release, Updated 2019-11-20

Organism(s) M. musculus

DataType(s) tissue structure

# of image datasets 8
size of image datasets 8.0 MB

# of quantitative datasets 0
# of quantitative datasets 0 bytes

Paper information Oshima M et. al. (2014), Sci Rep 4, 6044
doi: 10.1038/srep06044
pmid: 25116435

Project 102-Ogawa-SalivaryGlandDev

Release, Updated 2019-11-20

Organism(s) M. musculus

DataType(s) generation of salivary gland

# of image datasets 6
size of image datasets 167.5 MB

# of quantitative datasets 0
# of quantitative datasets 0 bytes

Paper information Ogawa M et. al. (2013), Nat Commun 4, 2498
doi: 10.1038/ncomms3498
pmid: 24084982

Project 103-Hirayama-GlandReg

Release, Updated 2019-11-20

Organism(s) M. musculus

DataType(s) gland regeneration

# of image datasets 24
size of image datasets 34.3 MB

# of quantitative datasets 0
# of quantitative datasets 0 bytes

Paper information Hirayama M et. al. (2013), Nat Commun 4, 2497
doi: 10.1038/ncomms3497
pmid: 24084941

Project 104-Bin-SkinImmuno

Release, Updated 2019-11-20

Organism(s) M. musculus

DataType(s) immnocytochemistry of skin

# of image datasets 5
size of image datasets 20.2 MB

# of quantitative datasets 0
# of quantitative datasets 0 bytes

Paper information Bin BH et. al. (2017), Proc Natl Acad Sci U S A 114(46), 12243-12248
doi: 10.1073/pnas.1710726114
pmid: 29078349

Project 105-Ono-ToothDev

Release, Updated 2019-11-20

Organism(s) Canis lupus familiaris

DataType(s) tooth development

# of image datasets 9
size of image datasets 333.4 KB

# of quantitative datasets 0
# of quantitative datasets 0 bytes

Paper information Ono M et. al. (2017), Sci Rep 7, 44522
doi: 10.1038/srep44522
pmid: 28300208

Project 108-Sugita-RPEiPSCell

Release, Updated 2019-11-20

Organism(s) M. fascicularis

DataType(s) cell dynamics

# of image datasets 9
size of image datasets 6.0 MB

# of quantitative datasets 0
# of quantitative datasets 0 bytes

Paper information Sugita S et. al. (2017), Stem Cell Reports 9(5), 1501-1515
doi: 10.1016/j.stemcr.2017.10.003
pmid: 29103970

Project 109-Mandai-RPEiPSCell

Release, Updated 2019-11-20

Organism(s) H. sapiens

DataType(s) iPS derived retinal pigment epithelial cell sheet

# of image datasets 15
size of image datasets 29.8 MB

# of quantitative datasets 0
# of quantitative datasets 0 bytes

Paper information Mandai M et. al. (2017), N Engl J Med 376(11), 1038-1046
doi: 10.1056/NEJMoa1608368
pmid: 28296613

Project 111-Kawaguchi-NPCellsDyn

Release, Updated 2019-11-20

Organism(s) M. musculus

DataType(s) cell dynamics

# of image datasets 30
size of image datasets 15.7 GB

# of quantitative datasets 2
# of quantitative datasets 12.3 MB

Paper information Kawaguchi K et. al. (2017), Nature 545(7654), 327-331
doi: 10.1038/nature22321
pmid: 28403137

Project 113-Kamioka-CellDyn

Release, Updated 2019-11-20

Organism(s) M. musculus

DataType(s) Cell dynamics, ERK activation by FRET

# of image datasets 5
size of image datasets 1.8 GB

# of quantitative datasets 0
# of quantitative datasets 0 bytes

Paper information Kamioka Y et. al. (2017), Cancer Sci 108(2), 226-235
doi: 10.1111/cas.13132
pmid: 27960041

Project 114-Shiura-MouseEmbryoDyn SSBD:repository:
ssbd-repos-000114

Release, Updated 2019-11-20

Organism(s) M. musculus

DataType(s) X chromosome inactivation (XCI) dynamics

# of image datasets 179
size of image datasets 14.3 GB

# of quantitative datasets 0
# of quantitative datasets 0 bytes

Paper information Shiura H and Abe K (2019), Sci Rep 9(1), 3637
doi: 10.1038/s41598-019-38807-0
pmid: 30842444

Project 115-Nabeshima-DuodenumVilliCell

Release, Updated 2019-11-20

Organism(s) M. musculus

DataType(s) transgene expression

# of image datasets 3
size of image datasets 681.0 KB

# of quantitative datasets 0
# of quantitative datasets 0 bytes

Paper information Nabeshima R et. al. (2018), Elife 7
doi: 10.7554/eLife.36435
pmid: 30070635

Project 116-Yamada-Glycogen

Release, Updated 2019-11-20

Organism(s) Drosophila

DataType(s) tissuel immunostaining

# of image datasets 12
size of image datasets 67.3 MB

# of quantitative datasets 0
# of quantitative datasets 0 bytes

Paper information Yamada T et. al. (2018), Development 145(6)
doi: 10.1242/dev.158865
pmid: 29467247

Project 118-Iraha-hESCRetina

Release, Updated 2019-11-20

Organism(s) H. sapiens

DataType(s) tissue morphology

# of image datasets 4
size of image datasets 24.6 MB

# of quantitative datasets 0
# of quantitative datasets 0 bytes

Paper information Iraha S et. al. (2018), Stem Cell Reports 10(3), 1059-1074
doi: 10.1016/j.stemcr.2018.01.032
pmid: 29503091

Project 119-Sakashita-FishVertebrae SSBD:repository:
ssbd-repos-000119

Release, Updated 2019-11-20

Organism(s) T. snyderi, C. spinosus, T. orientalis, P. olivaceus, L. setigerus, S. forsteni, M. cinereus, P. altivelis altivelis, K. punctatus, L. litulon, T. pardalis, A. hanedai, T. tonggol, S. zonatus, P. major, Z. faber, S. oblongus, H. dubius, S. pinguis, C. abei, M. sagifue, S. japonicus, S. japonica, T. japonicus, S. melanostictus, M. uradoi, R. prometheoides, T. stictonotus, C. saira, Z. nebulosa, H. typus, H. hilgendorfii

DataType(s) vertebral bodies of teleost fish

# of image datasets 141
size of image datasets 140.1 GB

# of quantitative datasets 0
# of quantitative datasets 0 bytes

Paper information Sakashita M et. al. (2019), J Morphol 280(6), 778-795
doi: 10.1002/jmor.20983
pmid: 30945336

Project 121-Inoue-SingleCellDyn

Release, Updated 2019-11-20

Organism(s) Mus musculus

DataType(s) single cell dynamics

# of image datasets 29
size of image datasets 18.5 GB

# of quantitative datasets 0
# of quantitative datasets 0 bytes

Paper information Inoue H et. al. (2018), Cell Struct Funct 43(2), 153-169
doi: 10.1247/csf.18012
pmid: 30047513

Project 123-Yalikun-ZygoteDyn

Release, Updated 2019-11-20

Organism(s) M. musculus

DataType(s) zygote rotation

# of image datasets 2
size of image datasets 542.3 MB

# of quantitative datasets 0
# of quantitative datasets 0 bytes

Paper information Yalikun, Yaxiaer et. al. (2018), Micro & Nano Letters 13(3), 306-311
doi: 10.1049/mnl.2017.0731

Project 124-Ueda-miPSRetina

Release, Updated 2019-11-20

Organism(s) M. musculus

DataType(s) retina differentiation

# of image datasets 31
size of image datasets 99.0 MB

# of quantitative datasets 0
# of quantitative datasets 0 bytes

Paper information Ueda K et. al. (2018), Biochem Biophys Res Commun 495(4), 2595-2601
doi: 10.1016/j.bbrc.2017.12.092
pmid: 29274337

Project 125-Gessesse-CX3CR1nanodisc

Release, Updated 2019-11-20

Organism(s) -

DataType(s) protein analysis

# of image datasets 1
size of image datasets 412.7 MB

# of quantitative datasets 0
# of quantitative datasets 0 bytes

Paper information Gessesse B et. al. (2018), Life (Basel) 8(4)
doi: 10.3390/life8040054
pmid: 30400226

Project 132-Goto-CellMor

Release, Updated 2019-11-20

Organism(s) M. musculus

DataType(s) Electron micrographs

# of image datasets 12
size of image datasets 12.4 MB

# of quantitative datasets 0
# of quantitative datasets 0 bytes

Paper information Goto S et. al. (2018), Elife 7
doi: 10.7554/eLife.32358
pmid: 29609731

Project 135-Maruyama-LymVesselImmuno

Release, Updated 2019-11-20

Organism(s) M. musculus

DataType(s) Immunostaining , Immunostaining

# of image datasets 17
size of image datasets 58.9 MB

# of quantitative datasets 0
# of quantitative datasets 0 bytes

Paper information Maruyama K et. al. (2019), Dev Biol 452(2), 134-143
doi: 10.1016/j.ydbio.2019.05.002
pmid: 31112709

Project 136-Matsumiya-ESCellDyn

Release, Updated 2019-11-20

Organism(s) M. musculus

DataType(s) Hes7 expression dynamics

# of image datasets 9
size of image datasets 216.6 MB

# of quantitative datasets 0
# of quantitative datasets 0 bytes

Paper information Matsumiya M et. al. (2018), Development 145(4)
doi: 10.1242/dev.156836
pmid: 29437832

Project 141-Sato-CellMorphology

Release, Updated 2019-11-20

Organism(s) M. musculus

DataType(s) synapse morphology

# of image datasets 17
size of image datasets 51.1 MB

# of quantitative datasets 0
# of quantitative datasets 0 bytes

Paper information Sato Y and Okabe S (2019), Microscopy (Oxf) 68(2), 122-132
doi: 10.1093/jmicro/dfy128
pmid: 30371805

Project 73-Fujii-NeuronalMolDynCa2

Release, Updated 2018-11-15

Organism(s) -

DataType(s) molecular dynamics

# of image datasets 0
size of image datasets 0 bytes

# of quantitative datasets 100
# of quantitative datasets 1.1 GB

Paper information Fujii M et. al. (2017), Biophys J 112(4), 813-826
doi: 10.1016/j.bpj.2016.12.043
pmid: 28256240

Project 76-Tanaka-MuscleDyn

Release, Updated 2018-11-15

Organism(s) M. sieboldi

DataType(s) Muscle dynamics

# of image datasets 0
size of image datasets 0 bytes

# of quantitative datasets 2
# of quantitative datasets 272.6 MB

Paper information Tanaka, Yo et. al. (2017), Sensors and Actuators B: Chemical 242, 1186-1192
doi: 10.1016/j.snb.2016.09.123

Project 47-Noguchi-CellDyn

Release, Updated 2018-11-14

Organism(s) M. musculus

DataType(s) cell dynamics

# of image datasets 38
size of image datasets 90.2 GB

# of quantitative datasets 0
# of quantitative datasets 0 bytes

Paper information Noguchi M et. al. (2015), Cell Rep 13(12), 2679-86
doi: 10.1016/j.celrep.2015.11.058
pmid: 26711336

Project 55-Maekawa-ESCellDyn

Release, Updated 2018-11-14

Organism(s) M. musculus

DataType(s) tissue structure

# of image datasets 2
size of image datasets 54.9 MB

# of quantitative datasets 0
# of quantitative datasets 0 bytes

Paper information Maekawa Y et. al. (2016), Curr Eye Res 41(4), 558-68
doi: 10.3109/02713683.2015.1038359
pmid: 25880804

Project 57-Herawati-CellDyn

Release, Updated 2018-11-14,
2020-02-03

Organism(s) M. musculus

DataType(s) epithelial cells dynamics

# of image datasets 23
size of image datasets 2.4 GB

# of quantitative datasets 1
# of quantitative datasets 971.8 KB

Paper information Herawati E et. al. (2016), J Cell Biol 214(5), 571-86
doi: 10.1083/jcb.201601023
pmid: 27573463

Project 59-Yano-MicrotubuleImmuno

Release, Updated 2018-11-14

Organism(s) M. musculus

DataType(s) Microtubule immunofluorescence

# of image datasets 1
size of image datasets 1.2 MB

# of quantitative datasets 0
# of quantitative datasets 0 bytes

Paper information Yano T et. al. (2013), J Cell Biol 203(4), 605-14
doi: 10.1083/jcb.201304194
pmid: 24385485

Project 74-Bansod-NSCellHes5

Release, Updated 2018-11-14

Organism(s) M. musculus

DataType(s) cell dynamics

# of image datasets 64
size of image datasets 124.7 MB

# of quantitative datasets 0
# of quantitative datasets 0 bytes

Paper information Bansod S et. al. (2017), Development 144(17), 3156-3167
doi: 10.1242/dev.147256
pmid: 28851724

Project 75-Minegishi-NodeCell

Release, Updated 2018-11-14

Organism(s) M. musculus

DataType(s) cell tissue

# of image datasets 4
size of image datasets 5.2 MB

# of quantitative datasets 0
# of quantitative datasets 0 bytes

Paper information Minegishi K et. al. (2017), Dev Cell 40(5), 439-452.e4
doi: 10.1016/j.devcel.2017.02.010
pmid: 28292423

Project 77-Aoki-CellDynERK

Release, Updated 2018-11-14,
2022-11-21 (errata)

Organism(s) Canis lupus familiaris

DataType(s) cell dynamics

# of image datasets 14
size of image datasets 1.4 GB

# of quantitative datasets 2
# of quantitative datasets 548.1 KB

Paper information Aoki K et. al. (2017), Dev Cell 43(3), 305-317.e5
doi: 10.1016/j.devcel.2017.10.016
pmid: 29112851

Project 78-Takagi-CellDyn

Release, Updated 2018-11-14

Organism(s) H. sapiens

DataType(s) cell dynamics

# of image datasets 8
size of image datasets 6.7 MB

# of quantitative datasets 0
# of quantitative datasets 0 bytes

Paper information Takagi S et. al. (2017), Clin Ophthalmol 11, 1219-1225
doi: 10.2147/OPTH.S134338
pmid: 28721006

Project 79-Inomata-HeLaCell

Release, Updated 2018-11-14

Organism(s) H. sapiens

DataType(s) intracellular structure

# of image datasets 8
size of image datasets 6.0 MB

# of quantitative datasets 0
# of quantitative datasets 0 bytes

Paper information Inomata K et. al. (2017), Chem Commun (Camb) 53(81), 11245-11248
doi: 10.1039/c7cc06004a
pmid: 28960222

Project 81-Yasugi-DmeCellDyn

Release, Updated 2018-11-14

Organism(s) D. melanogaster

DataType(s) LysoTracker-positive vesicle, nucleus

# of image datasets 4
size of image datasets 4.7 MB

# of quantitative datasets 0
# of quantitative datasets 0 bytes

Paper information Yasugi T et. al. (2017), Sci Rep 7(1), 1619
doi: 10.1038/s41598-017-01754-9
pmid: 28487555

Project 82-Ikeda-GeneExp

Release, Updated 2018-11-14

Organism(s) M. musculus

DataType(s) gene expression

# of image datasets 9
size of image datasets 50.4 MB

# of quantitative datasets 0
# of quantitative datasets 0 bytes

Paper information Ikeda T et. al. (2018), Nat Commun 9(1), 1387
doi: 10.1038/s41467-018-03748-1
pmid: 29643333

Project 83-Fumoto-LungDevWnt

Release, Updated 2018-11-14

Organism(s) M. musculus

DataType(s) organ formation

# of image datasets 18
size of image datasets 31.0 MB

# of quantitative datasets 0
# of quantitative datasets 0 bytes

Paper information Fumoto K et. al. (2017), Development 144(1), 151-162
doi: 10.1242/dev.141325
pmid: 27913639

Project 84-Ito-CellDyn

Release, Updated 2018-11-14

Organism(s) H. sapiens

DataType(s) cell dynamics

# of image datasets 7
size of image datasets 638.0 MB

# of quantitative datasets 0
# of quantitative datasets 0 bytes

Paper information Ito S et. al. (2017), Nat Commun 8(1), 1834
doi: 10.1038/s41467-017-01945-y
pmid: 29184140

Project 85-Kosodo-NeuralballDyn

Release, Updated 2018-11-14

Organism(s) M. musculus

DataType(s) Dynamics of neural ball shape and neural differentiation

# of image datasets 3
size of image datasets 1.8 GB

# of quantitative datasets 0
# of quantitative datasets 0 bytes

Paper information Kosodo Y et. al. (2017), Biochem Biophys Res Commun 483(1), 94-100
doi: 10.1016/j.bbrc.2016.12.187
pmid: 28063930

Project 87-CorneliaKoeverle-SpineDyn

Release, Updated 2018-11-14

Organism(s) M. musculus

DataType(s) spine dynamics

# of image datasets 30
size of image datasets 204.9 MB

# of quantitative datasets 2
# of quantitative datasets 0 bytes

Paper information Cornelia Koeberle S et. al. (2017), Sci Rep 7(1), 13409
doi: 10.1038/s41598-017-13728-y
pmid: 29042611

Project 89-Isshiki-SpineDyn

Release, Updated 2018-11-14

Organism(s) M. musculus

DataType(s) spine dynamics

# of image datasets 40
size of image datasets 2.5 GB

# of quantitative datasets 0
# of quantitative datasets 0 bytes

Paper information Isshiki M et. al. (2014), Nat Commun 5, 4742
doi: 10.1038/ncomms5742
pmid: 25144834

Project 90-Ishiwata-SpindleDyn

Release, Updated 2018-11-14

Organism(s) X. laevis, H. sapiens

DataType(s) spindle dynamics

# of image datasets 3
size of image datasets 524.8 KB

# of quantitative datasets 0
# of quantitative datasets 0 bytes

Paper information Ishiwata, Shin'ichi et. al. (2017), Molecular Crystals and Liquid Crystals 647(1), 127-150
doi: 10.1080/15421406.2017.1289445

Project 91-Konagaya-AMPKactivity

Release, Updated 2018-11-14

Organism(s) M. musculus, H. sapiens

DataType(s) Cell dynamic

# of image datasets 6
size of image datasets 1.5 GB

# of quantitative datasets 0
# of quantitative datasets 0 bytes

Paper information Konagaya Y et. al. (2017), Cell Rep 21(9), 2628-2638
doi: 10.1016/j.celrep.2017.10.113
pmid: 29186696

Project 92-Uda-CellsigDyn

Release, Updated 2018-11-14

Organism(s) H. sapiens

DataType(s) cell signaling dynamics

# of image datasets 21
size of image datasets 1.0 GB

# of quantitative datasets 0
# of quantitative datasets 0 bytes

Paper information Uda Y et. al. (2017), Proc Natl Acad Sci U S A 114(45), 11962-11967
doi: 10.1073/pnas.1707190114
pmid: 29078307

Project 95-Nojima-CellMorphology

Release, Updated 2018-11-14

Organism(s) M. musculus, H. sapiens

DataType(s) cell morphology

# of image datasets 114
size of image datasets 608.2 MB

# of quantitative datasets 0
# of quantitative datasets 0 bytes

Paper information Nojima S et. al. (2017), Sci Rep 7(1), 9269
doi: 10.1038/s41598-017-09117-0
pmid: 28839164

Project 96-Kamimura-ChemotaxisDyn

Release, Updated 2018-11-14

Organism(s) D. discoideum AX2

DataType(s) dynamic of eukaryotic chemotaxis

# of image datasets 5
size of image datasets 1.0 GB

# of quantitative datasets 0
# of quantitative datasets 0 bytes

Paper information Kamimura Y et. al. (2016), Proc Natl Acad Sci U S A 113(16), 4356-61
doi: 10.1073/pnas.1516767113
pmid: 27044073

Project 106-Jin-BreastTumorFlu

Release, Updated 2018-11-14

Organism(s) M. musculus

DataType(s) breast tumor fluorescence

# of image datasets 8
size of image datasets 4.0 MB

# of quantitative datasets 0
# of quantitative datasets 0 bytes

Paper information Jin, Takashi et. al. (2016), Med. Chem. Commun. 7(4), 623-631
doi: 10.1039/C5MD00580A

Project 107-Tsuboi-BreastTumorFlu

Release, Updated 2018-11-14

Organism(s) M. musculus

DataType(s) breast tumor fluorescence

# of image datasets 13
size of image datasets 11.3 MB

# of quantitative datasets 0
# of quantitative datasets 0 bytes

Paper information Tsuboi S et. al. (2017), Chem Commun (Camb) 53(68), 9450-9453
doi: 10.1039/c7cc04966h
pmid: 28795717

Project 110-Makino-MembraneDyn

Release, Updated 2018-11-14

Organism(s) H. sapiens

DataType(s) membrane nakanori distribution

# of image datasets 10
size of image datasets 60.2 MB

# of quantitative datasets 0
# of quantitative datasets 0 bytes

Paper information Makino A et. al. (2017), FASEB J 31(4), 1301-1322
doi: 10.1096/fj.201500075R
pmid: 27492925

Project 21-Yasui-MolDynPTEN

Release, Updated 2017-10-03,
2018-11-15

Organism(s) D. discoideum

DataType(s) single molecule dynamics

# of image datasets 13
size of image datasets 1.2 GB

# of quantitative datasets 0
# of quantitative datasets 0 bytes

Paper information Yasui M et. al. (2014), PLoS Comput Biol 10(9), e1003817
doi: 10.1371/journal.pcbi.1003817
pmid: 25211206

Project 22-Kondo-CellDyn

Release, Updated 2017-10-03,
2018-11-15

Organism(s) D. melanogaster

DataType(s) cell dynamics

# of image datasets 16
size of image datasets 50.6 GB

# of quantitative datasets 0
# of quantitative datasets 0 bytes

Paper information Kondo T and Hayashi S (2013), Nature 494(7435), 125-9
doi: 10.1038/nature11792
pmid: 23334416

Project 23-Shirai-ESCellTissue

Release, Updated 2017-10-03,
2018-11-15

Organism(s) H. sapiens

DataType(s) tissue structure

# of image datasets 2
size of image datasets 2.1 MB

# of quantitative datasets 0
# of quantitative datasets 0 bytes

Paper information Shirai H et. al. (2016), Proc Natl Acad Sci U S A 113(1), E81-90
doi: 10.1073/pnas.1512590113
pmid: 26699487

Project 24-Kanemura-iPSCellDyn

Release, Updated 2017-10-03,
2018-11-15

Organism(s) H. sapiens

DataType(s) cell dynamics

# of image datasets 4
size of image datasets 10.5 MB

# of quantitative datasets 0
# of quantitative datasets 0 bytes

Paper information Kanemura H et. al. (2013), Sci Rep 3, 2334
doi: 10.1038/srep02334
pmid: 23903667

Project 25-Ke-SeeDB

Release, Updated 2017-10-03,
2017-11-15

Organism(s) M. musculus

DataType(s) neuron structure

# of image datasets 52
size of image datasets 17.1 GB

# of quantitative datasets 0
# of quantitative datasets 0 bytes

Paper information Ke MT et. al. (2013), Nat Neurosci 16(8), 1154-61
doi: 10.1038/nn.3447
pmid: 23792946

Project 26-Kinoshita-iPSCellDyn

Release, Updated 2017-10-03,
2018-11-15

Organism(s) M. musculus

DataType(s) cell dynamics

# of image datasets 2
size of image datasets 105.3 MB

# of quantitative datasets 0
# of quantitative datasets 0 bytes

Paper information Kinoshita H et. al. (2016), Invest Ophthalmol Vis Sci 57(1), 153-61
doi: 10.1167/iovs.15-17610
pmid: 26780319

Project 27-Iwasaki-iPSCellDyn

Release, Updated 2017-10-03,
2018-11-15

Organism(s) M. musculus

DataType(s) cell/tissue structure

# of image datasets 13
size of image datasets 327.0 MB

# of quantitative datasets 0
# of quantitative datasets 0 bytes

Paper information Iwasaki Y et. al. (2016), PLoS One 11(7), e0158282
doi: 10.1371/journal.pone.0158282
pmid: 27385038

Project 28-Assawachananont-iPSCellTissue

Release, Updated 2017-10-03,
2018-11-15

Organism(s) M. musculus

DataType(s) tissue structure

# of image datasets 8
size of image datasets 32.2 MB

# of quantitative datasets 0
# of quantitative datasets 0 bytes

Paper information Assawachananont J et. al. (2014), Stem Cell Reports 2(5), 662-74
doi: 10.1016/j.stemcr.2014.03.011
pmid: 24936453

Project 29-Ke-SeeDB2

Release, Updated 2017-10-03,
2018-11-15

Organism(s) M. musculus, H. sapiens, D. melanogaster

DataType(s) neuron structure

# of image datasets 58
size of image datasets 30.2 GB

# of quantitative datasets 0
# of quantitative datasets 0 bytes

Paper information Ke MT et. al. (2016), Cell Rep 14(11), 2718-32
doi: 10.1016/j.celrep.2016.02.057
pmid: 26972009

Project 30-Inomata-CellDyn

Release, Updated 2017-10-03,
2018-11-15

Organism(s) X. laevis

DataType(s) cell dynamics

# of image datasets 5
size of image datasets 1.2 GB

# of quantitative datasets 0
# of quantitative datasets 0 bytes

Paper information Inomata H et. al. (2013), Cell 153(6), 1296-311
doi: 10.1016/j.cell.2013.05.004
pmid: 23746842

Project 31-Matsuda-SigDyn

Release, Updated 2017-10-03,
2018-11-15

Organism(s) C. l. familiaris, C. griseus

DataType(s) cell dynamics

# of image datasets 3
size of image datasets 252.0 MB

# of quantitative datasets 0
# of quantitative datasets 0 bytes

Paper information Matsuda M et. al. (2012), Sci Signal 5(220), ra31
doi: 10.1126/scisignal.2002764
pmid: 22510469

Project 32-Matsuda-SigDyn

Release, Updated 2017-10-03,
2018-11-15

Organism(s) C. griseus

DataType(s) cell dynamics

# of image datasets 2
size of image datasets 164.6 MB

# of quantitative datasets 0
# of quantitative datasets 0 bytes

Paper information Matsuda M et. al. (2015), Nat Commun 6, 6195
doi: 10.1038/ncomms7195
pmid: 25652697

Project 33-Yamao-MolDynRho

Release, Updated 2017-10-03,
2018-11-15

Organism(s) H. sapiens

DataType(s) cell dynamics

# of image datasets 19
size of image datasets 805.3 MB

# of quantitative datasets 0
# of quantitative datasets 0 bytes

Paper information Yamao M et. al. (2015), Sci Rep 5, 17527
doi: 10.1038/srep17527
pmid: 26634649

Project 34-Hayashi-CellDynSDSRM

Release, Updated 2017-10-03,
2018-11-15

Organism(s) C. l. familiaris

DataType(s) organelle dynamics

# of image datasets 3
size of image datasets 104.0 MB

# of quantitative datasets 0
# of quantitative datasets 0 bytes

Paper information Hayashi S and Okada Y (2015), Mol Biol Cell 26(9), 1743-51
doi: 10.1091/mbc.E14-08-1287
pmid: 25717185

Project 35-Yonemura-CellDyn

Release, Updated 2017-10-03,
2018-11-15

Organism(s) M. musculus, C. l. familiaris, H. sapiens

DataType(s) cell dynamics

# of image datasets 3
size of image datasets 97.4 MB

# of quantitative datasets 0
# of quantitative datasets 0 bytes

Paper information Yonemura S (2014), PLoS One 9(11), e112922
doi: 10.1371/journal.pone.0112922
pmid: 25393292

Project 36-Torisawa-MolDynEg5

Release, Updated 2017-10-03,
2018-11-15

Organism(s) -

DataType(s) microtubule dynamics

# of image datasets 3
size of image datasets 7.9 GB

# of quantitative datasets 0
# of quantitative datasets 0 bytes

Paper information Torisawa T et. al. (2016), Biophys J 111(2), 373-385
doi: 10.1016/j.bpj.2016.06.010
pmid: 27463139

Project 37-Arata-MolDynPar2

Release, Updated 2017-10-03,
2020-02-03

Organism(s) C. elegans

DataType(s) single molecule dynamics

# of image datasets 3
size of image datasets 1.5 GB

# of quantitative datasets 3
# of quantitative datasets 32.6 MB

Paper information Arata Y et. al. (2016), Cell Rep 16(8), 2156-2168
doi: 10.1016/j.celrep.2016.07.047
pmid: 27524610

Project 38-Inoue-ShellStruct

Release, Updated 2017-10-03,
2017-11-15

Organism(s) D. cf. damesi (NA)

DataType(s) strucure

# of image datasets 7
size of image datasets 9.4 GB

# of quantitative datasets 0
# of quantitative datasets 0 bytes

Paper information Inoue S and Kondo S (2016), Sci Rep 6, 33689
doi: 10.1038/srep33689
pmid: 27640361

Project 39-Shibata-MolDynPTEN

Release, Updated 2017-10-03,
2018-11-15

Organism(s) D. discoideum

DataType(s) cell dynamics

# of image datasets 2
size of image datasets 723.2 MB

# of quantitative datasets 2
# of quantitative datasets 35.8 MB

Paper information Shibata T et. al. (2012), J Cell Sci 125(Pt 21), 5138-50
doi: 10.1242/jcs.108373
pmid: 22899720

Project 40-Sakakibara-KTDyn

Release, Updated 2017-10-03,
2018-11-15

Organism(s) M. musculus

DataType(s) kinetochore dynamics

# of image datasets 3
size of image datasets 6.0 GB

# of quantitative datasets 1
# of quantitative datasets 4.9 MB

Paper information Sakakibara Y et. al. (2015), Nat Commun 6, 7550
doi: 10.1038/ncomms8550
pmid: 26130582

Project 41-Hirata-XChrHiC

Release, Updated 2017-10-03,
2018-11-15

Organism(s) M. musculus

DataType(s) chromosome structure

# of image datasets 0
size of image datasets 0 bytes

# of quantitative datasets 11
# of quantitative datasets 3.9 MB

Paper information Hirata Y et. al. (2016), Sci Rep 6, 34982
doi: 10.1038/srep34982
pmid: 27725694

Project 43-Takai-SubcellStructONL

Release, Updated 2017-10-03,
2018-11-15

Organism(s) C. l. familiaris

DataType(s) lysosomes dynamics, peroxisomes dynamics

# of image datasets 2
size of image datasets 90.0 MB

# of quantitative datasets 2
# of quantitative datasets 620.8 KB

Paper information Takai A et. al. (2015), Proc Natl Acad Sci U S A 112(14), 4352-6
doi: 10.1073/pnas.1418468112
pmid: 25831507

Project 44-Hihara-NucleosomeDyn

Release, Updated 2017-10-03,
2018-11-15

Organism(s) -

DataType(s) single molecule dynamics

# of image datasets 0
size of image datasets 0 bytes

# of quantitative datasets 3
# of quantitative datasets 132.9 MB

Paper information Hihara S et. al. (2012), Cell Rep 2(6), 1645-56
doi: 10.1016/j.celrep.2012.11.008
pmid: 23246002

Project 48-Susaki-MouseBrainCUBIC

Release, Updated 2017-10-03,
2018-11-15

Organism(s) M. musculus

DataType(s) organ structure

# of image datasets 27
size of image datasets 117.1 GB

# of quantitative datasets 0
# of quantitative datasets 0 bytes

Paper information Susaki EA et. al. (2014), Cell 157(3), 726-39
doi: 10.1016/j.cell.2014.03.042
pmid: 24746791

Project 49-Susaki-MouseBrainCUBIC

Release, Updated 2017-10-03,
2018-11-15

Organism(s) M. musculus

DataType(s) organ structure

# of image datasets 1
size of image datasets 5.3 GB

# of quantitative datasets 0
# of quantitative datasets 0 bytes

Paper information Susaki EA et. al. (2015), Nat Protoc 10(11), 1709-27
doi: 10.1038/nprot.2015.085
pmid: 26448360

Project 50-Tainaka-MouseBodyCUBIC

Release, Updated 2017-10-03,
2018-11-15

Organism(s) M. musculus

DataType(s) organ structure

# of image datasets 40
size of image datasets 113.4 MB

# of quantitative datasets 0
# of quantitative datasets 0 bytes

Paper information Tainaka K et. al. (2014), Cell 159(4), 911-24
doi: 10.1016/j.cell.2014.10.034
pmid: 25417165

Project 52-Suzuki-FrogTailDyn

Release, Updated 2017-10-03

Organism(s) X. laevis

DataType(s) cell dynamics

# of image datasets 1
size of image datasets 16.9 MB

# of quantitative datasets 0
# of quantitative datasets 0 bytes

Paper information Suzuki M et. al. (2016), Genes Cells 21(4), 358-69
doi: 10.1111/gtc.12349
pmid: 26914410

Project 53-Ichimura-CellDyn

Release, Updated 2017-10-03

Organism(s) M. musculus

DataType(s) cell dynamics

# of image datasets 4
size of image datasets 320.4 MB

# of quantitative datasets 0
# of quantitative datasets 0 bytes

Paper information Ichimura T et. al. (2016), Sci Rep 6, 37562
doi: 10.1038/srep37562
pmid: 27876845

Project 20-Azuma-WormMembrane SSBD:repository:
ssbd-repos-000020

Release, Updated 2017-03-01,
2017-11-15

Organism(s) C. elegans

DataType(s) cellular dynamics

# of image datasets 1
size of image datasets 19.8 MB

# of quantitative datasets 1
# of quantitative datasets 76.1 MB

Paper information Azuma Y and Onami S (2017), BMC Bioinformatics 18(1), 307
doi: 10.1186/s12859-017-1717-6
pmid: 28629355

Project 12-Takayama-Oocyte

Release, Updated 2016-10-03,
2020-02-03

Organism(s) C. elegans

DataType(s) oocyte shape dynamics

# of image datasets 119
size of image datasets 4.7 GB

# of quantitative datasets 119
# of quantitative datasets 3.7 GB

Paper information Takayama J and Onami S (2016), Cell Rep 15(3), 625-637
doi: 10.1016/j.celrep.2016.03.040
pmid: 27068469

Project 14-Ochiai-MolDynMS2

Release, Updated 2016-10-03,
2018-11-15

Organism(s) M. musculus

DataType(s) gene expression dynamics

# of image datasets 1
size of image datasets 4.6 MB

# of quantitative datasets 0
# of quantitative datasets 0 bytes

Paper information Ochiai H et. al. (2015), Nucleic Acids Res 43(19), e127
doi: 10.1093/nar/gkv624
pmid: 26092696

Project 16-Tanaka-FluidDyn

Release, Updated 2016-10-03,
2018-11-15

Organism(s) M. musculus

DataType(s) cell dynamics, fluid dynamics

# of image datasets 4
size of image datasets 241.0 MB

# of quantitative datasets 2
# of quantitative datasets 2.6 MB

Paper information Tanaka, Yo and Fujita, Hideaki (2015), Sensors and Actuators B: Chemical 210, 267-272
doi: 10.1016/j.snb.2014.12.069

Project 17-Aoki-MolDyn

Release, Updated 2016-10-03,
2018-11-15

Organism(s) R. norvegicus

DataType(s) cell dynamics

# of image datasets 2
size of image datasets 157.1 MB

# of quantitative datasets 0
# of quantitative datasets 0 bytes

Paper information Aoki K et. al. (2013), Mol Cell 52(4), 529-40
doi: 10.1016/j.molcel.2013.09.015
pmid: 24140422

Project 18-Kunida-MolDynRho

Release, Updated 2016-10-03,
2018-11-15

Organism(s) H. sapiens

DataType(s) cell dynamics

# of image datasets 2
size of image datasets 111.4 MB

# of quantitative datasets 0
# of quantitative datasets 0 bytes

Paper information Kunida K et. al. (2012), J Cell Sci 125(Pt 10), 2381-92
doi: 10.1242/jcs.096859
pmid: 22344265

Project 19-Tanaka-FluidDyn

Release, Updated 2016-10-03,
2018-11-15

Organism(s) -

DataType(s) fluid dynamics

# of image datasets 1
size of image datasets 1.3 GB

# of quantitative datasets 0
# of quantitative datasets 0 bytes

Paper information Tanaka, Yo (2014), Micromachines 5(2), 289-299
doi: 10.3390/mi5020289

Project 11-Toyoshima-NeuAct SSBD:repository:
ssbd-repos-000011

Release, Updated 2016-05-20,
2018-11-15

Organism(s) C. elegans

DataType(s) neuronal nuclear dynamics

# of image datasets 14
size of image datasets 20.4 GB

# of quantitative datasets 14
# of quantitative datasets 67.8 MB

Paper information Toyoshima Y et. al. (2016), PLoS Comput Biol 12(6), e1004970
doi: 10.1371/journal.pcbi.1004970
pmid: 27271939

Project 13-Watabe-MolDyn

Release, Updated 2016-01-18,
2018-11-15

Organism(s) D. discoideum, R. norvegicus

DataType(s) single molecule dynamics

# of image datasets 2
size of image datasets 496.3 KB

# of quantitative datasets 4
# of quantitative datasets 151.4 GB

Paper information Watabe M et. al. (2015), PLoS One 10(7), e0130089
doi: 10.1371/journal.pone.0130089
pmid: 26147508

Project 15-Harima-GeneExp

Release, Updated 2016-01-18,
2018-11-15

Organism(s) M. musculus

DataType(s) gene expression data

# of image datasets 2
size of image datasets 398.1 KB

# of quantitative datasets 2
# of quantitative datasets 649.4 KB

Paper information Harima Y et. al. (2013), Cell Rep 3(1), 1-7
doi: 10.1016/j.celrep.2012.11.012
pmid: 23219549

Project 10-Komatsuzaki-MolDyn

Release, Updated 2015-10-03,
2018-11-15

Organism(s) D. discoideum

DataType(s) single molecule dynamics

# of image datasets 1
size of image datasets 450.0 MB

# of quantitative datasets 1
# of quantitative datasets 2.4 MB

Paper information Komatsuzaki A et. al. (2015), Small 11(12), 1396-401
doi: 10.1002/smll.201402508
pmid: 25504902

Project 7-Cronin-WormLocomotion

Release, Updated 2014-10-03,
2018-11-15

Organism(s) C. elegans

DataType(s) behavior

# of image datasets 0
size of image datasets 0 bytes

# of quantitative datasets 11
# of quantitative datasets 150.4 MB

Paper information Cronin CJ et. al. (2005), BMC Genet 6, 5
doi: 10.1186/1471-2156-6-5
pmid: 15698479

Project 8-Bashar-MouseEmbryo

Release, Updated 2014-10-03,
2018-11-15

Organism(s) M. musculus

DataType(s) nuclear positions

# of image datasets 1
size of image datasets 157.0 MB

# of quantitative datasets 1
# of quantitative datasets 1.3 MB

Paper information Bashar MK et. al. (2012), PLoS One 7(5), e35550
doi: 10.1371/journal.pone.0035550
pmid: 22590505

Project 9-Masumoto-Transcriptome

Release, Updated 2014-10-03,
2017-10-03

Organism(s) M. musculus

DataType(s) gene expression data

# of image datasets 0
size of image datasets 0 bytes

# of quantitative datasets 8
# of quantitative datasets 97.0 MB

Paper information Masumoto KH et. al. (2010), Curr Biol 20(24), 2199-206
doi: 10.1016/j.cub.2010.11.038
pmid: 21129973

Project 1-Bao-WormEmbryo

Release, Updated 2013-10-03,
2018-11-15

Organism(s) C. elegans

DataType(s) nuclear division dynamics

# of image datasets 0
size of image datasets 0 bytes

# of quantitative datasets 1
# of quantitative datasets 22.9 MB

Paper information Bao Z et. al. (2006), Proc Natl Acad Sci U S A 103(8), 2707-12
doi: 10.1073/pnas.0511111103
pmid: 16477039

Project 4-Keller-FlyEmbryo

Release, Updated 2013-10-03,
2019-04-24

Organism(s) D. melanogaster

DataType(s) nuclear positions

# of image datasets 0
size of image datasets 0 bytes

# of quantitative datasets 2
# of quantitative datasets 4.0 GB

Paper information Keller PJ et. al. (2010), Nat Methods 7(8), 637-42
doi: 10.1038/nmeth.1476
pmid: 20601950

Project 5-Keller-FishEmbryo

Release, Updated 2013-10-03,
2018-11-15

Organism(s) D. rerio

DataType(s) nuclear positions

# of image datasets 0
size of image datasets 0 bytes

# of quantitative datasets 7
# of quantitative datasets 48.2 GB

Paper information Keller PJ et. al. (2008), Science 322(5904), 1065-9
doi: 10.1126/science.1162493
pmid: 18845710

Project 2-Kyoda-WormEmbryoRNAi

Release, Updated 2013-09-02,
2020-02-03

Organism(s) C. elegans

DataType(s) nuclear division dynamics

# of image datasets 187
size of image datasets 1.5 TB

# of quantitative datasets 186
# of quantitative datasets 136.1 GB

Paper information Kyoda K et. al. (2013), Nucleic Acids Res 41(Database issue), D732-7
doi: 10.1093/nar/gks1107
pmid: 23172286

Project 6-Arjunan-MolDyn

Release, Updated 2013-09-02,
2018-11-15

Organism(s) E. coli

DataType(s) single molecule dynamics

# of image datasets 0
size of image datasets 0 bytes

# of quantitative datasets 1
# of quantitative datasets 190.8 MB

Paper information Arjunan SN and Tomita M (2010), Syst Synth Biol 4(1), 35-53
doi: 10.1007/s11693-009-9047-2
pmid: 20012222