Project
Release
Title(s)
Organism
Size
Paper information

Release 2024-11-21
Title PROX1+ and CDX2+ cells form distinct cell populations in colorectal cancer.
Organism homo sapiens
Size 214.6 MB
Paper Information Ohata H et. al. (2023), Cell Rep, 112519
doi: 10.1016/j.celrep.2023.112519 pmid: 37224811

Release 2024-11-21
Title Digital staining of the cell nucleus
Organism Human
Size 31.1 GB
Paper Information

Release 2024-10-01
Title Image-based parameter inference for epithelial mechanics
Organism Drosophila
Size 6.0 MB
Paper Information Ogita G et. al. (2022), PLoS Comput Biol 18(6), e1010209
doi: 10.1371/journal.pcbi.1010209 pmid: 35737656

Release 2024-09-26
Title Confocal images of the immunostained cerebellum in PTPdelta/Ptprd KO mice
Organism Mus musculus
Size 6.7 GB
Paper Information Okuno Y et. al. (2023), Front Mol Neurosci 16, 1206245
doi: 10.3389/fnmol.2023.1206245 pmid: 37426069

Release 2024-09-25
Title Visualization of actin-rich cellular protrusions in medaka embryos
Organism Oryzias latipes
Size 4.9 MB
Paper Information Kawanishi T et. al. (2023), Bio Protoc 13(13), e4710
doi: 10.21769/BioProtoc.4710 pmid: 37449037

Release 2024-09-25
Title The transcription factor NRF1 (NFE2L1) activates aggrephagy by inducing p62 and GABARAPL1 after proteasome inhibition to maintain proteostasis
Organism Homo sapiens
Size 1.4 GB
Paper Information Hatanaka A et. al. (2023), Sci Rep 13(1), 14405
doi: 10.1038/s41598-023-41492-9 pmid: 37658135

Release 2024-09-25
Title Cells sorted off hiPSC-derived kidney organoids coupled with immortalized cells reliably model the proximal tubule
Organism Homo sapiens
Size 1.0 GB
Paper Information Banan Sadeghian R et. al. (2023), Commun Biol 6(1), 483
doi: 10.1038/s42003-023-04862-7 pmid: 37142732

Release 2024-09-09
Title Images and trajectories of diffusing objects
Organism Escherichia coli
Size 14.9 GB
Paper Information Takanami, Kaito et. al.
doi: 10.48550/arXiv.2401.15909 Taniguchi, Daisuke et. al. (2024/09/09/) 6(3), 033272-
doi: 10.1103/PhysRevResearch.6.033272

Release 2024-07-01
Title Rac1/Rac3-double knockout cochlear hair cells
Organism mouse cochlea
Size 51.4 MB
Paper Information Nakamura T et. al. (2023), J Mol Med (Berl)
doi: 10.1007/s00109-023-02317-4 pmid: 37204479

Release 2024-06-10
Title Dataset of actin nanocluster dynamics during Drosophila tracheal tubulogenesis
Organism Drosophila melanogaster
Size 10.1 GB
Paper Information Sekine S et. al. (2024), Nat Commun 15(1), 464
doi: 10.1038/s41467-023-44684-z pmid: 38267421

Release 2024-06-08
Title Expression patterns of Osiris family genes in the pupal head of Drosophila
Organism Drosophila melanogaster
Size 3.0 GB
Paper Information Sun Z et. al. (2024), Genetics
doi: 10.1093/genetics/iyae065 pmid: 38652268

Release 2024-06-05
Title Imaging data in the paper, "Automated neuronal reconstruction with super-multicolour Tetbow labelling and threshold-based clustering of colour hues" (Leiwe et al., 2024).
Organism Mus musculus, Homo Sapiens
Size 623.2 GB
Paper Information Leiwe MN et. al. (2024), Nat Commun 15(1), 5279
doi: 10.1038/s41467-024-49455-y pmid: 38918382

Release 2024-06-04
Title Neuropeptide gene expression atlas in the adult zebrafish brain
Organism Danio rerio
Size 108.5 GB
Paper Information Hiraki-Kajiyama T et. al. (2024), J Comp Neurol 532(6), e25619
doi: 10.1002/cne.25619 pmid: 38831653

Release 2024-05-17
Title SEM imege of cancer cells adhered on the track etched membrane
Organism Homo sapiens
Size 187.7 MB
Paper Information Shiomi A et. al. (2024), Nat Commun 15(1), 3812
doi: 10.1038/s41467-024-48088-5 pmid: 38760380

Release 2024-04-08
Title Dataset for "Live-cell fluorescence imaging and optogenetic control of PKA kinase activity in fission yeast Schizosaccharomyces pombe."
Organism Schizosaccharomyces pombe
Size 84.4 GB
Paper Information Sakai K et. al. (2024), Yeast
doi: 10.1002/yea.3937 pmid: 38583078

Release 2024-01-23
Title Time-lapse images of cell dynamics in different E. coli strain cells after gene deletion by blue-light illumination.
Organism Escherichia coli
Size 3.1 TB
Paper Information Koganezawa Y et. al. (2022), Elife 11
doi: 10.7554/eLife.74486 pmid: 35535492

Release 2024-01-15
Title Dataset for "Live-cell imaging provides direct evidence for a threshold in CDK activity at the G2/M transition."
Organism Schizosaccharomyces pombe
Size 76.2 GB
Paper Information Hironori Sugiyama et. al. (2023/01/01), 2023.03.26.534249
doi: 10.1101/2023.03.26.534249 Sugiyama H et. al. (2024), Dev Cell
doi: 10.1016/j.devcel.2023.12.014 pmid: 38228139

Release 2023-12-24
Title Semantic segmentation data of eight anatomical regions for mouse brain slices with neurogenic-tagged neurons from NeuroGT database
Organism Mus musculus
Size 52.4 GB
Paper Information Shimojo,Yuki et. al. (2024), IPSJ Transactions on Bioinformatics 17(), 33-39
doi: 10.2197/ipsjtbio.17.33

Release 2023-09-01
Title Confocal immunohistochemistry images and BDML file for quantitative information of SMA/laminin α2 mouse vessel-type classification for machine learning.
Organism Mus musculus
Size 8.1 GB
Paper Information Oishi M et. al. (2022), Glia
doi: 10.1002/glia.24273 pmid: 36165697

Release 2023-08-30
Title Cryo-electron microscopy (cryo-EM) microscopy images of human ribosomes isolated from METTL18 KO cells.
Organism Homo sapiens
Size 1.1 TB
Paper Information Matsuura-Suzuki E et. al. (2022), Elife 11
doi: 10.7554/eLife.72780 pmid: 35674491

Release 2023-08-29
Title Time-lapse images of L1210 cells growth and division in the mammalian mother machine microfluidic device.
Organism Mus musculus
Size 248.4 GB
Paper Information Seita A et. al. (2021), PLoS One 16(2), e0236534
doi: 10.1371/journal.pone.0236534 pmid: 33524064

Release 2023-08-15
Title x-y coordinates of Caenorhabditis elegans centroids stimulated with electric shock
Organism Caenorhabditis elegans
Size 38.7 MB
Paper Information Tee LF et. al. (2023), Genetics
doi: 10.1093/genetics/iyad148 pmid: 37595066

Release 2023-08-07
Title All four knockout of ErbB-family genes delineates their roles in proliferation, survival, and collective cell migration of epithelial cells.
Organism canis familiaris
Size 64.4 GB
Paper Information Matsuda K et. al. (2023), J Cell Sci
doi: 10.1242/jcs.261199 pmid: 37519219

Release 2023-07-20
Title Time-course images of HeLa cells dynamics with fluorescence proteins vgCam and ATeam1.03.
Organism Homo sapiens
Size 202.7 MB
Paper Information Sugiura K and Nagai T (2022), Commun Biol 5
doi: 10.1038/s42003-022-04153-7 pmid: 36329112

Release 2023-07-20
Title HS-SICM images or time-lapse images of the cell surface of the cells of the indicated genotype and normal crypt cells.
Organism Homo sapiens, Mus musculus
Size 227.1 MB
Paper Information Wang D et. al. (2022), Biomaterials 280, 121256
doi: 10.1016/j.biomaterials.2021.121256 pmid: 34794825

Release 2023-07-20
Title Time-course fulorescence images of dynamic changes in histone H3K9me3 in living cells.
Organism Mus musculus, Homo sapiens, Chlorocebus pygerythrus
Size 1.3 GB
Paper Information Sasaki K et. al. (2022), Cell Chem Biol 29(7), 1153-1161.e5
doi: 10.1016/j.chembiol.2022.05.006 pmid: 35728598

Release 2023-07-20
Title Live imaging of caspase cascades activity in apoptosis-induced HeLa cells.
Organism Homo sapiens
Size 5.6 GB
Paper Information Suzuki M et. al. (2022), Sci Rep 12(1), 21160
doi: 10.1038/s41598-022-25286-z pmid: 36476686

Release 2023-07-20
Title Time-lapse imaging of reversible intercellular NCad interactions by INCIDER in HEK293T cells.
Organism Homo sapiens
Size 28.6 MB
Paper Information Kanadome T et. al. (2022), Commun Biol 5(1), 1065
doi: 10.1038/s42003-022-04023-2 pmid: 36207396

Release 2023-07-20
Title Fluorescence images of immunostaining analysis of SARS-CoV-2 NP in hepatocytes of bile duct (ibd-LoC) or blood vessel (bv-LoC) at 2 or 6 days post-infection (dpi).
Organism Homo sapiens
Size 5.9 MB
Paper Information Deguchi S et. al. (2023), PNAS Nexus 2(3), pgad029
doi: 10.1093/pnasnexus/pgad029 pmid: 36896132

Release 2023-07-20
Title Time-lapse FRAP assay images of DNAPTP6 dynamics in cells or not
Organism Mus musculus
Size 1.1 GB
Paper Information Asamitsu S et. al. (2023), Sci Adv 9(8), eade2035
doi: 10.1126/sciadv.ade2035 pmid: 36827365

Release 2023-07-20
Title Images of immotile cilia dynamics in wild-type mouse embryo or iv/iv mutant embryo
Organism Mus musculus
Size 19.1 GB
Paper Information Katoh TA et. al. (2023), Science 379(6627), 66-71
doi: 10.1126/science.abq8148 pmid: 36603091

Release 2023-07-20
Title Identifying a lung stem cell subpopulation by combining single-cell morphometrics, organoid culture, and transcriptomics
Organism Mus musculus, Homo sapiens
Size 6.5 GB
Paper Information Fujimura T et. al. (2023), Stem Cells
doi: 10.1093/stmcls/sxad044 pmid: 37468433

Release 2023-06-09
Title Nuclear shape of excitatory neurons in the visual cortex upon visual stimulation of young and aged mice
Organism Mus Musculus
Size 2.5 GB
Paper Information Tanita Frey et. al. (2022/01/01), 2022.08.22.504704
doi: 10.1101/2022.08.22.504704

Release 2023-06-07
Title Imaging data in the paper, "Activity-dependent local protection and lateral inhibition mediate synaptic competition in developing mitral cells" (Fujimoto et al., 2023).
Organism Mus musculus
Size 752.0 GB
Paper Information Fujimoto S et. al. (2023), Dev Cell
doi: 10.1016/j.devcel.2023.05.004 pmid: 37290446

Release 2023-05-29
Title Fluorescence images or time-lapse images of mitochondrial distribution dynamics during the development of rice zygotes
Organism Oryza sativa temperate japonica subgroup
Size 179.4 MB
Paper Information Aini H et. al. (2022), Plant Reprod 35(1), 47-60
doi: 10.1007/s00497-021-00430-3 pmid: 34633536

Release 2023-05-11
Title Time-series images of daily patterns of wake, NREM, and REM sleep in control or CRF-Cre/Bmal1flox/flox mice under LD and DD.
Organism Mus musculus
Size 157.2 GB
Paper Information Hung CJ et. al. (2021), Front Neurosci 15, 808754
doi: 10.3389/fnins.2021.808754 pmid: 35250437

Release 2023-05-11
Title Time-lapse imaging of hba reporter expression in the GFP knock-in N. furzeri embryos.
Organism Nothobranchius furzeri
Size 50.0 MB
Paper Information Oginuma M et. al. (2022), Sci Rep 12(1), 11628
doi: 10.1038/s41598-022-15972-3 pmid: 35804091

Release 2023-05-11
Title Time-lapse images of filament formation or deformation of CAHS3-GFP in human HEp-2 cells.
Organism Homo sapiens
Size 1.7 GB
Paper Information Tanaka A et. al. (2022), PLoS Biol 20(9), e3001780
doi: 10.1371/journal.pbio.3001780 pmid: 36067153

Release 2023-05-11
Title Time-lapse images of WT and Admp MO embryos from late neurula to late tailbud stage.
Organism Ciona robusta
Size 470.3 MB
Paper Information Kogure YS et. al. (2022), Development 149(21)
doi: 10.1242/dev.200215 pmid: 36227591

Release 2023-05-09
Title Image processing and manual annotation data of mouse brains with neurogenic-tagged neurons from NeuroGT database
Organism Mus musculus
Size 100.2 GB
Paper Information Kawabata, Hiroto et. al. (2023), 1-7
doi: https://doi.org/10.1145/3620679.3620680

Release 2023-04-26
Title Fiber photometry traces of the kisspeptin neurons in the arcuate nucleus of the hypothalamus in young and aging mice
Organism Mus musculus
Size 16.1 GB
Paper Information Teppei Goto et. al. (2023/01/01), 2022.08.08.503241
doi: 10.1101/2022.08.08.503241 Goto T et. al. (2023), Elife 12
doi: 10.7554/eLife.82533 pmid: 37223988

Release 2023-04-13
Title Bright-field images of the liverwort Marchantia polymorpha ssp. ruderalis in gemmalings (dorsal view).
Organism Marchantia polymorpha
Size 32.2 GB
Paper Information

Release 2023-03-22
Title Time-lapse confocal images of ERK1-EGFP for MEK1-WT or MEK1-mutations after EGF stimulation.
Organism Homo sapiens
Size 141.6 MB
Paper Information Kubota Y et. al. (2022), Nat Commun 13(1), 4063
doi: 10.1038/s41467-022-31690-w pmid: 35831322

Release 2023-03-22
Title Time-series images of temprature dynamics in HeLa cells.
Organism Homo sapiens
Size 3.8 GB
Paper Information Lu K et. al. (2022), Nano Lett 22(14), 5698-5707
doi: 10.1021/acs.nanolett.2c00608 pmid: 35792763

Release 2023-03-09
Title Epidermal growth factor receptor signaling protects epithelia from morphogenetic instability and tissue damage in Drosophila
Organism Drosophila melanogaster
Size 146.3 GB
Paper Information Yoshida, Kentaro and Hayashi, Shigeo (2022/01/01), 2022.08.28.505615
doi: 10.1101/2022.08.28.505615 Yoshida K and Hayashi S (2023), Development 150(5)
doi: 10.1242/dev.201231 pmid: 36897356

Release 2023-02-21
Title Live imaging of Ca2+ concentration dynamics in BrafV600E melanoma cells.
Organism Mus musculus, Canis lupus familiaris
Size 81.4 GB
Paper Information Konishi Y et. al. (2021), Cancer Res 81(15), 4124-4132
doi: 10.1158/0008-5472.CAN-20-4245 pmid: 34035084

Release 2023-02-16
Title Time lapse images of the spatiotemporal regulation of ROCK activity in mice live blood vessels.
Organism Mus musculus
Size 17.1 GB
Paper Information Imanishi A et. al. (2021), Am J Pathol 191(1), 194-203
doi: 10.1016/j.ajpath.2020.09.012 pmid: 33069718

Release 2023-02-02
Title Time-series 3D images and BDML file for quantiative information about early mouse embryos with labeled nuclei.
Organism Mus musculus
Size 250.8 MB
Paper Information Tokuoka Y et. al. (2020), NPJ Syst Biol Appl 6(1), 32
doi: 10.1038/s41540-020-00152-8 pmid: 33082352

Release 2022-12-15
Title Bright-field time-lapse images of live murine immune-related cells
Organism Mus musculus
Size 798.8 MB
Paper Information Jin J et. al. (2023), Proc Natl Acad Sci U S A 120(1), e2210283120
doi: 10.1073/pnas.2210283120 pmid: 36577074

Release 2022-12-13
Title Spectroscopic OR-PAM images of HeLa cells in the planar-culture or dispersed in Matrigel.
Organism Homo sapiens
Size 14.8 MB
Paper Information Hirasawa T et. al. (2022), Photoacoustics 26, 100364
doi: 10.1016/j.pacs.2022.100364 pmid: 35574189

Release 2022-12-13
Title Fluorescence images of developmental stages of D. magna during early embryogenesis.
Organism Daphnia magna
Size 75.2 MB
Paper Information Adhitama N et. al. (2020), PLoS One 15(10), e0239893
doi: 10.1371/journal.pone.0239893 pmid: 33035251

Release 2022-11-30
Title Time courses images of Ca2+ responses in the TRPC inhibitor-expressing HEK293 cells or HeLa cells.
Organism Homo sapiens
Size 575.5 MB
Paper Information Shimauchi T et. al. (2022), Cells 11(13)
doi: 10.3390/cells11132041 pmid: 35805125

Release 2022-11-25
Title Live imaging of ERK activation on a small epithelial cell cluster during cell migration
Organism Canis lupus familiaris
Size 179.5 MB
Paper Information Asakura Y et. al. (2021), Sci Rep 11(1), 4069
doi: 10.1038/s41598-021-83396-6 pmid: 33603023

Release 2022-11-23
Title Time-lapse STED imaging of mitochondrial dynamics in MitoPB Yellow-labeled cells
Organism Homo sapiens
Size 388.7 MB
Paper Information Wang C et. al. (2019), Proc Natl Acad Sci U S A 116(32), 15817-15822
doi: 10.1073/pnas.1905924116 pmid: 31337683

Release 2022-11-23
Title Images of tumor-bearing mice or KPL-4 cells apoptosis treated with Kadcyla for different time.
Organism Homo sapiens, Mus musculus
Size 86.4 MB
Paper Information Tsuboi S and Jin T (2020), RSC Adv 10(63), 38244-38250
doi: 10.1039/d0ra06495e pmid: 35517522

Release 2022-11-23
Title Fluorescence images of breast tumor-bearing mouse treated with or without Kadcyla for different time.
Organism Homo sapiens, Mus musculus
Size 26.1 MB
Paper Information Tsuboi S and Jin T (2020), RSC Adv 10(47), 28171-28179
doi: 10.1039/d0ra04710d pmid: 35519107

Release 2022-11-23
Title Time-lapse imaging of local Ca2+ signals in cultured cells by membrane-targeted Ca2+ indicators
Organism Rattus norvegicus, Homo sapiens, Mus musculus
Size 894.0 MB
Paper Information Bannai H et. al. (2019), J Vis Exp(145)
doi: 10.3791/59246 pmid: 30958464

Release 2022-11-23
Title HE staining images of human skin and the THS model after 1, 3, 5 and 7 days of culture at the air–liquid interface.
Organism Homo sapiens
Size 1.2 GB
Paper Information Kimura S et. al. (2020), Commun Biol 3(1), 637
doi: 10.1038/s42003-020-01365-7 pmid: 33127987

Release 2022-11-23
Title Images of hair follicle regneration from adult mouse cells.
Organism Mus musculus
Size 377.2 MB
Paper Information Takeo M et. al. (2021), Sci Rep 11(1), 1173
doi: 10.1038/s41598-020-80624-3 pmid: 33568688

Release 2022-11-23
Title Live imaging of different cells response to IFN-γ both in vivo and in vitro and BDML file for quantitative information of tumor size in B6 albino mice implanted with different cells.
Organism Mus musculus
Size 5.6 GB
Paper Information Tanaka T et. al. (2021), Cell Struct Funct 46(2), 103-111
doi: 10.1247/csf.21052 pmid: 34744115

Release 2022-11-23
Title Time-lapse confocal images of visulization of mitotic progression in HeLa cells or BY-2 cells.
Organism Nicotiana tabacum, Homo sapiens
Size 7.4 GB
Paper Information Kamada T et. al. (2022), Sci Rep 12(1), 809
doi: 10.1038/s41598-021-04543-7 pmid: 35039530

Release 2022-11-23
Title Whole-brain imaging of mouse using block-face serial microscopy tomography (FAST).
Organism Mus musculus
Size 3.2 TB
Paper Information Seiriki K et. al. (2019), Nat Protoc 14(5), 1509-1529
doi: 10.1038/s41596-019-0148-4 pmid: 30962606

Release 2022-11-23
Title 3D whole-brain image showing social-interaction-induced activation of Arc-dVenus fluorescence in adult WT or POGZWT/Q1038R mice.
Organism Mus musculus
Size 2.2 TB
Paper Information Matsumura K et. al. (2020), Nat Commun 11
doi: 10.1038/s41467-020-14697-z pmid: 32103003

Release 2022-11-23
Title Time-lapse images of FRET‐based indicators dynamics in HEK293T cells or K562 cells.
Organism Homo sapiens
Size 1.1 GB
Paper Information Kanadome T et. al. (2021), Sci Rep 11(1), 22237
doi: 10.1038/s41598-021-01481-2 pmid: 34782670

Release 2022-11-23
Title Time-lapse images of light inducible PA-Gal4cc activity in mouse brain or HEK293T cells
Organism Mus musculus, Homo sapiens
Size 1.8 GB
Paper Information Yamada M et. al. (2020), iScience 23(9), 101506
doi: 10.1016/j.isci.2020.101506 pmid: 32919371

Release 2022-11-23
Title Live imaging of HEK293 cells expressing P2Y6 receptors or P2Y6R mutants.
Organism Homo sapiens
Size 90.9 MB
Paper Information Nishiyama K et. al. (2022), Sci Signal 15(716), eabj0644
doi: 10.1126/scisignal.abj0644 pmid: 35015570

Release 2022-11-23
Title Time-sereis images and BDML file for quantitative information about chemotaxis behavior of N. humilis treated with or without platytocin.
Organism Notocomplana humilis
Size 3.4 GB
Paper Information Kobayashi A et. al. (2022), Sci Adv 8(9), eabk0331
doi: 10.1126/sciadv.abk0331 pmid: 35245108

Release 2022-11-23
Title Smartphone-based time-lapse bioluminescence images of GeNL(Ca2+)_520 or CalfluxVTN in HeLa cells.
Organism Homo sapiens
Size 13.0 MB
Paper Information Hattori M et. al. (2020), Sensors (Basel) 20(24)
doi: 10.3390/s20247166 pmid: 33327525

Release 2022-11-23
Title Living-cell imaging of HeLa cells transfected with Tom20-CR.
Organism Homo sapiens
Size 160.5 MB
Paper Information Miyamoto T et. al. (2021), STAR Protoc 2(3), 100721
doi: 10.1016/j.xpro.2021.100721 pmid: 34401787

Release 2022-11-23
Title Live images of SiR-tubulin-stained haploid or diploid HAP1 cells with or without thymidine treatment.
Organism Homo sapiens
Size 74.3 GB
Paper Information Yoshizawa K et. al. (2020), Front Cell Dev Biol 8, 721
doi: 10.3389/fcell.2020.00721 pmid: 32850837

Release 2022-11-23
Title Live cell imaging of temperature dynamics in HeLa cells.
Organism Homo sapiens
Size 118.6 MB
Paper Information Vu CQ et. al. (2021), Sci Rep 11(1), 16519
doi: 10.1038/s41598-021-96049-5 pmid: 34389773

Release 2022-11-23
Title Time-lapse super resolution imaging of Kohinoor2.0 or Kohinoor in live cells.
Organism Homo sapiens, Cercopithecidae
Size 2.8 GB
Paper Information Wazawa T et. al. (2021), Microscopy (Oxf) 70(4), 340-352
doi: 10.1093/jmicro/dfab001 pmid: 33481018

Release 2022-09-29
Title Imaging dataset of migrating MDCK cells and wounded mouse ear skin.
Organism Canis familiaris, Mus musculus
Size 81.9 GB
Paper Information Hino N et. al. (2022), Dev Cell 57(19), 2290-2304.e7
doi: 10.1016/j.devcel.2022.09.003 pmid: 36174555

Release 2022-06-30
Title Cell membrane images, restored images, and segmentation results of 52 C. elegans embryos.
Organism Caenorhabditis elegans
Size 236.3 GB
Paper Information Azuma, Yusuke et. al. (2023), Frontiers in Bioinformatics 3
doi: 10.3389/fbinf.2023.1082531

Release 2022-04-21
Title Quantitative live-cell imaging of GPCR downstream signaling dynamics.
Organism Homo sapiens
Size 10.3 GB
Paper Information Tany R et. al. (2022), Biochem J 479(8), 883-900
doi: 10.1042/BCJ20220021 pmid: 35383830

Release 2022-04-18
Title Raman imaging in HeLa cells treated with D-alkyne-tagged C18FAs
Organism H. sapiens
Size 4.4 MB
Paper Information Egoshi S et. al. (2021), Org Biomol Chem 19(38), 8232-8236
doi: 10.1039/d1ob01479j pmid: 34528645

Release 2022-03-31
Title Time-lapse images of nucleolus and spindle pole body (SPB) movements in the sid4-mCherry and Cut11-GFP expressing S. pombe cells cultured in different medium
Organism Schizosaccharomyces pombe
Size 62.8 GB
Paper Information Ito H et. al. (2019), Biochem Biophys Res Commun 511(4), 820-825
doi: 10.1016/j.bbrc.2019.02.128 pmid: 30846209

Release 2022-03-31
Title Live imaging of hippocampal neurons expressing PMCA1-SEP or synaptophysin
Organism Mus musculus
Size 145.4 MB
Paper Information Ono Y et. al. (2019), Sci Rep 9(1), 4289
doi: 10.1038/s41598-019-40557-y pmid: 30862855

Release 2022-03-31
Title Fluorescence images of the cAMP-Signaling Pathway in 3D Tissues with FRET-Assisted Two-Photon Activation of bPAC.
Organism Mus musculus, Homo sapiens, Canis lupus familiaris
Size 4.3 GB
Paper Information Kinjo T et. al. (2020), ACS Chem Biol 15(11), 2848-2853
doi: 10.1021/acschembio.0c00333 pmid: 33074647

Release 2022-03-31
Title Images and BDML file for quantiative information of ERK activity in myogenic cell migration during mouse muscle regneration.
Organism Mus musculus
Size 55.5 GB
Paper Information Konagaya Y et. al. (2020), Cell Cycle 19(22), 3167-3181
doi: 10.1080/15384101.2020.1838779 pmid: 33131406

Release 2022-03-31
Title Fluorescence images of biliverdin reductase-A (BLVRA) activity in WT or BLVRA KO mice or HeLa cells.
Organism Homo sapiens, Mus musculus
Size 2.0 GB
Paper Information Kobachi K et. al. (2020), Cell Struct Funct 45(2), 131-141
doi: 10.1247/csf.20010 pmid: 32581154

Release 2022-03-31
Title Imges of different biosensors activity expressed in HeLa cells, MDCK cells or mice ear skin.
Organism Mus musculus, Homo sapiens, Canis lupus familiaris
Size 3.9 GB
Paper Information Watabe T et. al. (2020), ACS Sens 5(3), 719-730
doi: 10.1021/acssensors.9b01941 pmid: 32101394

Release 2022-03-31
Title Time-lapse images or SIM images of Actin organization and dynamics in mice during dendritic spine development.
Organism Mus musculus
Size 3.7 GB
Paper Information Iwasaki K et. al. (2020), Eur J Neurosci 51(3), 806-821
doi: 10.1111/ejn.14634 pmid: 31793065

Release 2022-03-31
Title Time-lapse images of spine morphology and dynamics in cultured neurons of WT or cortactin knockout (KO) mice.
Organism Mus musculus
Size 199.7 MB
Paper Information Tanaka S et. al. (2020), Microscopy (Oxf) 69(1), 44-52
doi: 10.1093/jmicro/dfaa001 pmid: 31990031

Release 2022-03-31
Title Images of EPS-induced Ca2+ signals in myotubes at 0, 5, 15, 30 and 60 min of 2 Hz or 20 Hz EPS.
Organism Mus musculus
Size 304.1 MB
Paper Information Hoshino D et. al. (2020), iScience 23(10), 101558
doi: 10.1016/j.isci.2020.101558 pmid: 33083727

Release 2022-03-31
Title Images of morphological changes in granular cells during cornification.
Organism Homo sapiens
Size 265.3 GB
Paper Information Ipponjima S et. al. (2020), Sci Rep 10(1), 5515
doi: 10.1038/s41598-020-62240-3 pmid: 32218450

Release 2022-03-31
Title Confocal microscopy images of lysosomes situation in NSCs in both the DG and SVZ of mice.
Organism Mus musculus
Size 6.8 GB
Paper Information Kobayashi T et. al. (2019), Nat Commun 10(1), 5446
doi: 10.1038/s41467-019-13203-4 pmid: 31784517

Release 2022-03-31
Title Living images of dendrites expressing DsRed2 and PSD-95-EGFP in control mice and socially isolated mice.
Organism Mus musculus
Size 309.2 MB
Paper Information Iguchi R et. al. (2020), Neurosci Res 154, 27-34
doi: 10.1016/j.neures.2019.05.004 pmid: 31226269

Release 2022-03-31
Title Single-molecule images of living cells with epidermal growth factor (EGF) stimulation by automated in-cell single-molecule imaging system (AiSIS)
Organism Cricetulus griseus
Size 1.5 GB
Paper Information Hiroshima M et. al. (2020), Microscopy (Oxf) 69(2), 69-78
doi: 10.1093/jmicro/dfz116 pmid: 32090254

Release 2022-03-31
Title Microscopy images or BDML file for quantiative information about actin polymers mobility in mouse dendritic spines.
Organism Mus musculus
Size 9.4 MB
Paper Information Obashi K et. al. (2019), Cell Rep 27(5), 1503-1515.e8
doi: 10.1016/j.celrep.2019.04.006 pmid: 31042476

Release 2022-03-31
Title Images of Hes1 or Ascl1 expression regulating neural stem cells development in the adult mouse brain.
Organism Mus musculus
Size 2.1 GB
Paper Information Sueda R et. al. (2019), Genes Dev 33(9-10), 511-523
doi: 10.1101/gad.323196.118 pmid: 30862661

Release 2022-03-31
Title Time-lapse images of chemotaxis trajectories of gip1Δ cells harbouring vecotr, Gip1(wild-type), Gip1(D208A), or Gip1(ΔC-tail)
Organism Dictyostelium discoideum
Size 3.9 GB
Paper Information Miyagawa T et. al. (2018), Nat Commun 9(1), 4635
doi: 10.1038/s41467-018-07035-x pmid: 30401901

Release 2022-03-31
Title Images of signaling molecules dynamic in Dictyostelium discoideum cells.
Organism Dictyostelium discoideum
Size 254.5 MB
Paper Information Tanabe Y et. al. (2018), J Cell Sci 131(23)
doi: 10.1242/jcs.214775 pmid: 30404836

Release 2022-03-31
Title Images and BDML file for quantiative information about mouse skeletal myoblasts C2C12 adhered on a surface with the native or cross-linked albumin structure for several days.
Organism Mus musculus
Size 1.2 GB
Paper Information Shen Y et. al. (2020), PLoS One 15(5), e0232518
doi: 10.1371/journal.pone.0232518 pmid: 32433673

Release 2022-03-31
Title 3D FIB-SEM images of a cross section of the ciliary pocket membrane in hTERT-RPE1 cells.
Organism Homo sapiens
Size 173.4 MB
Paper Information Miyamoto T et. al. (2020), EMBO J 39(12), e103499
doi: 10.15252/embj.2019103499 pmid: 32368833

Release 2022-03-31
Title 3D FIB-SEM images of a cross section of fin mesenchymal cells and actinotrichia in zebrafish.
Organism Danio rerio
Size 248.1 MB
Paper Information Kuroda J et. al. (2020), Front Cell Dev Biol 8, 580520
doi: 10.3389/fcell.2020.580520 pmid: 33154970

Release 2022-03-31
Title Single-molecule imaging and BDML file for quantitative information about trajectories of EGFR dynamics and activities in living CHO-K1 cells.
Organism Cricetulus griseus
Size 31.3 GB
Paper Information Hiroshima M et. al. (2018), J Mol Biol 430(9), 1386-1401
doi: 10.1016/j.jmb.2018.02.018 pmid: 29505756

Release 2022-03-31
Title Live-imaging of the absence of motile cilia in the middle of gecko embryos at stage 9.
Organism Gekko
Size 5.0 GB
Paper Information Kajikawa E et. al. (2020), Nat Ecol Evol 4(2), 261-269
doi: 10.1038/s41559-019-1072-2 pmid: 31907383

Release 2022-03-31
Title Live imaging of spindle bipolarization during meiosis I in mouse oocytes.
Organism Mus musculus
Size 43.0 GB
Paper Information Yoshida S et. al. (2020), Nat Commun 11(1), 2652
doi: 10.1038/s41467-020-16488-y pmid: 32461611

Release 2022-03-23
Title Adult zebrafish's telencephalic neural activity and behavior data during the GO/NOGO tasks in the virtual reality environment.
Organism Danio rerio
Size 581.7 GB
Paper Information Torigoe M et. al. (2021), Nat Commun 12(1), 5712
doi: 10.1038/s41467-021-26010-7 pmid: 34588436

Release 2022-03-09
Title Raman imaging in WI-38/VA-13 cells treated with 100 µM all-D-GLA
Organism H. sapiens
Size 4.7 MB
Paper Information Dodo K et. al. (2021), Chem Commun (Camb) 57(17), 2180-2183
doi: 10.1039/d0cc07824g pmid: 33527102

Release 2022-01-31
Title Imaging data sets of ATDC5 cells and fetal growth plates
Organism Mus musculus
Size 28.8 GB
Paper Information Hirota K et. al. (2022), Endocrinology 163(3)
doi: 10.1210/endocr/bqac005 pmid: 35041746

Release 2021-11-30
Title Timelapse images and BDML file for quantitative information about the cytoplasmic size affecting nuclear dynamics during mouse oocytes meiosis
Organism Mus musculus
Size 6.7 TB
Paper Information Kyogoku H and Kitajima TS (2017), Dev Cell 41(3), 287-298.e4
doi: 10.1016/j.devcel.2017.04.009 pmid: 28486131

Release 2021-11-29
Title Imaging dataset for "Near-infrared imaging in fission yeast by genetically encoded biosynthesis of phycocyanobilin"
Organism Schizosaccharomyces pombe, Saccharomyces cerevisiae, Homo Sapiens
Size 75.6 GB
Paper Information Sakai K et. al. (2021), J Cell Sci 134(24)
doi: 10.1242/jcs.259315 pmid: 34806750

Release 2021-11-25
Title Swimming behaviors of C. elegans in various genetic background cultured in different food conditions; cultured with OP50, 1g/L glucose, or no nutrients (M9 buffer)
Organism Caenorhabditis elegans
Size 48.6 GB
Paper Information Arata Y et. al. (2022), Sci Rep 12(1), 10481
doi: 10.1038/s41598-022-13022-6 pmid: 35729173

Release 2021-11-09
Title Imaging dataset for "Optogenetic relaxation of actomyosin contractility uncovers mechanistic roles of cortical tension during cytokinesis."
Organism xenopus laevis, canis familiaris, mus musculus
Size 17.8 GB
Paper Information Yamamoto K et. al. (2021), Nat Commun 12(1), 7145
doi: 10.1038/s41467-021-27458-3 pmid: 34880255

Release 2021-10-20
Title Post-hoc Correction of Chromatic Aberrations in Large-scale Volumetric Images in Confocal Microscopy
Organism Mus musculus
Size 236.2 GB
Paper Information Leiwe MN et. al. (2021), Front Neuroanat 15, 760063
doi: 10.3389/fnana.2021.760063 pmid: 34955764

Release 2021-10-18
Title Redundant and specific roles of EGFR ligands in the ERK activation waves during collective cell migration of MDCK cells
Organism canis familiaris
Size 90.3 GB
Paper Information Lin S et. al. (2022), Life Sci Alliance 5(1)
doi: 10.26508/lsa.202101206 pmid: 34667080

Release 2021-10-01
Title Micro-topographical guidance of macropinocytic signaling patches
Organism Dictyostelium discoideum
Size 6.4 GB
Paper Information Honda G et. al. (2021), Proc Natl Acad Sci U S A 118(50)
doi: 10.1073/pnas.2110281118 pmid: 34876521

Release 2021-09-30
Title Timelapse confocal images and BDML files for quantitative information about the kinetochore microtubule dynamics during mouse oocytes meiosis
Organism Mus musculus
Size 371.5 GB
Paper Information Yoshida S et. al. (2015), Dev Cell 33(5), 589-602
doi: 10.1016/j.devcel.2015.04.020 pmid: 26028219

Release 2021-09-30
Title Timelapse images and BDML file for quantitative information about the centromeric dynamics during mouse oocytes meiosis
Organism M. musculus
Size 720.8 GB
Paper Information Ding Y et. al. (2018), Curr Biol 28(10), 1661-1669.e4
doi: 10.1016/j.cub.2018.04.019 pmid: 29754905

Release 2021-09-30
Title Time lapse images and quantitative data of cell morphologic analysis in NuCyM transgenic mouse
Organism Mus musculus
Size 69.8 GB
Paper Information Imanishi A et. al. (2018), Cell Struct Funct 43(2), 129-140
doi: 10.1247/csf.18013 pmid: 29962383

Release 2021-09-30
Title Live-Cell FRET images and BDML quantitative information about extracellular signal-regulated kinase activity dynamics in thymocyte motility
Organism Mus musculus
Size 26.4 GB
Paper Information Konishi Y et. al. (2018), iScience 10, 98-113
doi: 10.1016/j.isci.2018.11.025 pmid: 30508722

Release 2021-09-30
Title Fluorescence images and BDML file for quantitative information about mouse intestinal epithelial cells (IECs) extracellular signal-regulated kinase (ERK) activity dynamics
Organism Mus musculus
Size 62.5 GB
Paper Information Muta Y et. al. (2018), Nat Commun 9(1), 2174
doi: 10.1038/s41467-018-04527-8 pmid: 29872037

Release 2021-09-30
Title Timelapse images and BDML file for quantitative information about the extracellular signal-regulated kinase (ERK) biosensor activity in HeLa cells, or 4T1 cancer cells or the transgenic mice
Organism Mus musculus
Size 6.4 GB
Paper Information Komatsu N et. al. (2018), Sci Rep 8(1), 8984
doi: 10.1038/s41598-018-27174-x pmid: 29895862

Release 2021-09-30
Title Timelapse FRET images data and BDML file for quantitative data about the cell migration in epidermis or urothelial of transgenic mice
Organism Mus musculus
Size 4.5 GB
Paper Information Sano T et. al. (2018), Am J Pathol 188(11), 2564-2573
doi: 10.1016/j.ajpath.2018.07.010 pmid: 30121259

Release 2021-09-30
Title Electron microimage of mitochondrial structure in control and Pre3 KO mice MEFs.
Organism Mus musculus
Size 6.4 MB
Paper Information Tanaka H et. al. (2019), J Cell Sci 132(11)
doi: 10.1242/jcs.224766 pmid: 31076512

Release 2021-09-30
Title Live imaging data of ERK activity in the MDCK cyte or mouse ear epidermis before or after 2p excitation.
Organism Mus musculus, Canis lupus familiaris
Size 1.1 GB
Paper Information Kinjo T et. al. (2019), Nat Methods 16(10), 1029-1036
doi: 10.1038/s41592-019-0541-5 pmid: 31501546

Release 2021-09-30
Title Time-lapse images and BDML file for quantiative information about tracking of Vascular endothelial cells (ECs) nuclei in branches.
Organism Mus musculus
Size 5.2 GB
Paper Information Takubo N et. al. (2019), Sci Rep 9(1), 9304
doi: 10.1038/s41598-019-45666-2 pmid: 31243314

Release 2021-09-30
Title Hes1 expression dynamics in the wild-type, Hes1 type-1 and Hes1 type-2 mutant NPCs of mice.
Organism Mus musculus
Size 696.4 MB
Paper Information Ochi S et. al. (2020), Development 147(4)
doi: 10.1242/dev.182204 pmid: 32094111

Release 2021-09-30
Title A set of imaging data related to the development of trans-scale scope and its application to biological study
Organism Mouse, Canis Lupus Familiaris, Homo sapiens, Dictyostelium discoideum
Size 602.5 GB
Paper Information Ichimura T et. al. (2021), Sci Rep 11(1), 16539
doi: 10.1038/s41598-021-95930-7 pmid: 34400683 Ichimura, T. et. al. (2021/01/01), 2020.06.29.179044
doi: 10.1101/2020.06.29.179044

Release 2021-09-11
Title See the paper titled “Metastatic tumor cells evade pulmonary NK cell-mediated killing by thrombin-mediated loss of CD155/PVR/Necl-5. ”
Organism Mus musculus
Size 244.1 GB
Paper Information Ichise H et. al. (2022), Elife 11
doi: 10.7554/eLife.76269 pmid: 35113018

Release 2021-07-01
Title Two photon fluorescent images from hyBRET-AMPK and GO-ATeam2 retinal explants.
Organism Mus musculus
Size 11.9 GB
Paper Information He J et. al. (2021), FASEB J 35(9), e21880
doi: 10.1096/fj.202101121R pmid: 34449091

Release 2021-06-09
Title Live imaging data of developing hair follicles in an article “Tracing the origin of hair follicle stem cells” (Morita et al., 2021).
Organism Mus musculus
Size 708.1 GB
Paper Information Morita R et. al. (2021), Nature 594(7864), 547-552
doi: 10.1038/s41586-021-03638-5 pmid: 34108685

Release 2021-05-12
Title Comparative mapping of crawling-cell morphodynamics in deep learning-based feature space
Organism Homo sapiens, Unknown (fish keratocyte), Dictyostelium discoideum
Size 4.9 GB
Paper Information Imoto D et. al. (2021), PLoS Comput Biol 17(8), e1009237
doi: 10.1371/journal.pcbi.1009237 pmid: 34383753

Project ssbd-repos-000170 SSBD:database
170-Tsutsui-HookBM
Release 2021-05-11
Title Mapping the molecular and structural specialization of the skin basement membrane for inter-tissue interactions
Organism Mus musculus
Size 2.9 GB
Paper Information Tsutsui K et. al. (2021), Nat Commun 12(1), 2577
doi: 10.1038/s41467-021-22881-y pmid: 33972551

Release 2021-04-12
Title Time-lapse images of ERK activity in embryonic murine trachea published in (2020, Yoshida et al., Front Cell Dev Biol)
Organism Mus musculus
Size 62.2 GB
Paper Information Yoshida T et. al. (2020), Front Cell Dev Biol 8, 585640
doi: 10.3389/fcell.2020.585640 pmid: 33195234

Release 2021-03-29
Title Imaging and other-related data of neurogenic tagging mouse lines.
Organism Mus musculus (NCBI:txid10090)
Size 1.6 TB
Paper Information Hirata T et. al. (2021), Cell Rep Methods 1(3), 100012
doi: 10.1016/j.crmeth.2021.100012 pmid: 35474959

Release 2021-02-17
Title Imaging data of the oocytes in C. elegans adults
Organism C. elegans
Size 43.0 MB
Paper Information Imakubo M et. al. (2021), BMC Bioinformatics 22(1), 73
doi: 10.1186/s12859-021-03990-3 pmid: 33596821

Release 2020-12-23
Title Fluorescence images of mouse embryonic stem cells derived salivary gland at different developmental stage
Organism Mus musculus
Size 1.1 GB
Paper Information Tanaka J et. al. (2018), Nat Commun 9(1), 4216
doi: 10.1038/s41467-018-06469-7 pmid: 30310071

Release 2020-12-23
Title Image data and quantitative data of cell shape changes in the early stage of Drosophila ventral furrow formation
Organism Drosophila
Size 5.5 GB
Paper Information Wen FL et. al. (2017), Biophys J 112(12), 2683-2695
doi: 10.1016/j.bpj.2017.05.012 pmid: 28636924

Release 2020-12-23
Title Immunostaining or timelapse images of observation of horizontal boundary cells (HBCs) at different somite stage in medaka embryo
Organism Oryzias
Size 145.4 MB
Paper Information Abe K et. al. (2019), Cell Rep 27(3), 928-939.e4
doi: 10.1016/j.celrep.2019.03.068 pmid: 30995487

Release 2020-10-30
Title Sets of image data of mouse mitral cells genetically labeled with utero electroporation.
Organism Mus musculus
Size 162.2 GB
Paper Information Aihara S et. al. (2021), Cell Rep 35(12), 109276
doi: 10.1016/j.celrep.2021.109276 pmid: 34161760

Release 2020-07-23
Title Bidirectional Wnt signaling between endoderm and mesoderm confers tracheal identity in mouse and human cells
Organism Mus Musculus, Homo sapiens
Size 6.9 GB
Paper Information Kishimoto K et. al. (2020), Nat Commun 11(1), 4159
doi: 10.1038/s41467-020-17969-w pmid: 32855415

Release 2020-07-22
Title Time-lapse images of ERK activity in MDCK cells published in (2020, Boocock et al., Nat Phys)
Organism Canis lupus familiaris
Size 48.8 GB
Paper Information Boocock, Daniel et. al. (2021), Nature Physics 17(2), 267-274
doi: 10.1038/s41567-020-01037-7

Release 2020-07-09
Title A set of calcium imaging data in the olfactory system of M. musculus adult
Organism Mus musculus
Size 33.0 GB
Paper Information Inagaki S et. al. (2020), Cell Rep 31(13), 107814
doi: 10.1016/j.celrep.2020.107814 pmid: 32610120

Release 2020-06-23
Title Raw data of an article “Multiple types of navigational information are diffusely and independently encoded in the population activities of the dentate gyrus neurons” (Murano et al., 2020)
Organism Mus musculus
Size 4.9 TB
Paper Information Murano T et. al. (2022), Proc Natl Acad Sci U S A 119(32), e2106830119
doi: 10.1073/pnas.2106830119 pmid: 35930667 Murano, Tomoyuki et. al. (2020/01/01), 2020.06.09.141572
doi: 10.1101/2020.06.09.141572

Release 2019-11-20
Title Images and time-lapse images of BMP4-dependent synapse dynamics in drosophila
Organism Mus musculus
Size 1.4 GB
Paper Information Higashi T et. al. (2018), Cell Rep 22(4), 919-929
doi: 10.1016/j.celrep.2017.12.101 pmid: 29386134

Release 2019-11-20
Title Time lapse images of pupal molt of the Japanese rhinoceros beetle Trypoxylus dichotomus at different time stage
Organism Trypoxylus dichotomus
Size 7.8 MB
Paper Information Matsuda K et. al. (2017), Sci Rep 7(1), 13939
doi: 10.1038/s41598-017-14170-w pmid: 29066748

Release 2019-11-20
Title BDML quantitative informations and time-lapse confocal images of the epithelial tissue deformation in tooth development
Organism M. musculus
Size 12.4 GB
Paper Information Morita R et. al. (2016), PLoS One 11(9), e0161336
doi: 10.1371/journal.pone.0161336 pmid: 27588418

Release 2019-11-20
Title Macromorphological images of the anagen phase of the hair cycles in mouse iPS cell-derived bioengineered hair
Organism M. musculus
Size 50.2 MB
Paper Information Takagi R et. al. (2016), Sci Adv 2(4), e1500887
doi: 10.1126/sciadv.1500887 pmid: 27051874

Release 2019-11-20
Title Time-lapse and micro-CT images of a split tooth germ in mouse
Organism M. musculus
Size 130.4 GB
Paper Information Yamamoto N et. al. (2015), Sci Rep 5, 18393
doi: 10.1038/srep18393 pmid: 26673152

Release 2019-11-20
Title SEM images of natrual tooth or bio-hybrid implant tooth surface and periodontal tissue structure
Organism M. musculus
Size 8.0 MB
Paper Information Oshima M et. al. (2014), Sci Rep 4, 6044
doi: 10.1038/srep06044 pmid: 25116435

Release 2019-11-20
Title Phase contrast images of natural and bioengineered salivary gland germs including the ED13.5 submandibular gland, the ED14.5 sublingual gland and the ED14.5 parotid gland on days 0,1,2,3 of organ cultures
Organism M. musculus
Size 167.5 MB
Paper Information Ogawa M et. al. (2013), Nat Commun 4, 2498
doi: 10.1038/ncomms3498 pmid: 24084982

Release 2019-11-20
Title Phase images of the development of natural and bioengineered lacrimal gland germ and harderian gland germ in time schedule
Organism M. musculus
Size 34.3 MB
Paper Information Hirayama M et. al. (2013), Nat Commun 4, 2497
doi: 10.1038/ncomms3497 pmid: 24084941

Release 2019-11-20
Title Immunocytochemistry images of ZIP10 (red) and E-cadherin (green) in skin from mouse embryos or postnatal day 2 (P2) mice.
Organism M. musculus
Size 20.2 MB
Paper Information Bin BH et. al. (2017), Proc Natl Acad Sci U S A 114(46), 12243-12248
doi: 10.1073/pnas.1710726114 pmid: 29078349

Release 2019-11-20
Title CT images of tooth movement of the natural erupted tooth and bioengineered tooth
Organism Canis lupus familiaris
Size 333.0 KB
Paper Information Ono M et. al. (2017), Sci Rep 7, 44522
doi: 10.1038/srep44522 pmid: 28300208

Release 2019-11-20
Title Immunofluorescence images of 46a IPS-RPE cells incubaed with the serum from the TLHM6 monkey in different stage
Organism M. fascicularis
Size 6.0 MB
Paper Information Sugita S et. al. (2017), Stem Cell Reports 9(5), 1501-1515
doi: 10.1016/j.stemcr.2017.10.003 pmid: 29103970

Release 2019-11-20
Title Fluorescein angiography images/optical coherence tomography images and micropermetry test of the transplanted eye after transplantation with iPS cell derived retinal pigment epithelium(RPE) sheet
Organism H. sapiens
Size 29.8 MB
Paper Information Mandai M et. al. (2017), N Engl J Med 376(11), 1038-1046
doi: 10.1056/NEJMoa1608368 pmid: 28296613

Release 2019-11-20
Title Time-lapse and fluorescent images of collectice dynamics of neural progenitor cells (NPCs)
Organism M. musculus
Size 15.7 GB
Paper Information Kawaguchi K et. al. (2017), Nature 545(7654), 327-331
doi: 10.1038/nature22321 pmid: 28403137

Release 2019-11-20
Title
Organism M. musculus
Size 1.8 GB
Paper Information Kamioka Y et. al. (2017), Cancer Sci 108(2), 226-235
doi: 10.1111/cas.13132 pmid: 27960041

Release 2019-11-20
Title Lineage trace images of LacZ cells in intestinal villi of the duodenum at different days
Organism M. musculus
Size 680.0 KB
Paper Information Nabeshima R et. al. (2018), Elife 7
doi: 10.7554/eLife.36435 pmid: 30070635

Release 2019-11-20
Title Immunostaining images of Glycogen in the fat body or body wall muscles in Drosophila
Organism Drosophila
Size 67.3 MB
Paper Information Yamada T et. al. (2018), Development 145(6)
doi: 10.1242/dev.158865 pmid: 29467247

Release 2019-11-20
Title Electron microscopy of mature photoreceptors in hESC-Dereived retina rosette-like structure
Organism H. sapiens
Size 24.6 MB
Paper Information Iraha S et. al. (2018), Stem Cell Reports 10(3), 1059-1074
doi: 10.1016/j.stemcr.2018.01.032 pmid: 29503091

Release 2019-11-20
Title Timelapse images and quantification of signal activity of differentiated C2C12 cells expressing Eevee-S6K and mitAT1.03 in individual myotube
Organism Mus musculus
Size 18.5 GB
Paper Information Inoue H et. al. (2018), Cell Struct Funct 43(2), 153-169
doi: 10.1247/csf.18012 pmid: 30047513

Release 2019-11-20
Title Living image of capturing the whole surface of a mouse zygote during rotation
Organism M. musculus
Size 542.3 MB
Paper Information Yalikun, Yaxiaer et. al. (2018), Micro & Nano Letters 13(3), 306-311
doi: 10.1049/mnl.2017.0731

Release 2019-11-20
Title Immunofluorescence images of photoreceptor-specific genes expressing in mouse iPS cells derived 3D retinal
Organism M. musculus
Size 99.0 MB
Paper Information Ueda K et. al. (2018), Biochem Biophys Res Commun 495(4), 2595-2601
doi: 10.1016/j.bbrc.2017.12.092 pmid: 29274337

Release 2019-11-20
Title Transmission electron images of homogeneity of CX3CR1-nanodisc complex in a reconstituted cell-free synthesis system
Organism
Size 412.7 MB
Paper Information Gessesse B et. al. (2018), Life (Basel) 8(4)
doi: 10.3390/life8040054 pmid: 30400226

Release 2019-11-20
Title Electon micrographs of the dorsal or ventral areas of choroidal vessels from adult (8-week-old) WT and Aldh1a KO mouse
Organism M. musculus
Size 12.3 MB
Paper Information Goto S et. al. (2018), Elife 7
doi: 10.7554/eLife.32358 pmid: 29609731

Release 2019-11-20
Title Immunostaining images of Prox1, PECAM or VEGER3 expression in mouse embryo different developmental stage
Organism M. musculus
Size 58.9 MB
Paper Information Maruyama K et. al. (2019), Dev Biol 452(2), 134-143
doi: 10.1016/j.ydbio.2019.05.002 pmid: 31112709

Release 2019-11-20
Title Time-lapse imaging of Hes7 promoter-driven luciferase activity in mouse embryos or presomitic mesoderm-like tissues (iPSM) induced from mouse ES cells
Organism M. musculus
Size 216.6 MB
Paper Information Matsumiya M et. al. (2018), Development 145(4)
doi: 10.1242/dev.156836 pmid: 29437832

Release 2019-11-20
Title FIB-SEM images of spine synapses morphology in spectrum disorder (ASD) model mice with human 15q11-13 chromosomal duplication (15q dup mice)
Organism M. musculus
Size 51.1 MB
Paper Information Sato Y and Okabe S (2019), Microscopy (Oxf) 68(2), 122-132
doi: 10.1093/jmicro/dfy128 pmid: 30371805

Release 2019-06-17
Title A set of RNA-FISH and immunofluorescence images of Xist/Tsix expression during peri-implantation embryoic development using whole-mount 3D RNA-FISH
Organism M. musculus
Size 7.0 GB
Paper Information Shiura H and Abe K (2019), Sci Rep 9(1), 3637
doi: 10.1038/s41598-019-38807-0 pmid: 30842444

Release 2019-06-13
Title Time-lapse 3D imaging data of cell nuclei
Organism Caenorhabditis elegans, Homo sapiens
Size 3.1 GB
Paper Information Wen C et. al. (2021), Elife 10
doi: 10.7554/eLife.59187 pmid: 33781383

Release 2019-04-19
Title A set of time-lapse imaging data of the C. elegans adults during swimming
Organism C. elegans
Size 17.6 GB
Paper Information Ikeda Y et. al. (2020), Sci Rep 10(1), 14775
doi: 10.1038/s41598-020-70319-0 pmid: 32901071

Release 2019-03-26
Title A set of transverse sections of teleost fish vertebral bodies
Organism M. cinereus, S. melanostictus, K. punctatus, P. altivelis altivelis, L. setigerus, L. litulon, C. abei, Z. nebulosa, Z. faber, M. sagifue, C. saira, H. hilgendorfii, S. oblongus, S. zonatus, C. spinosus, A. hanedai, T. japonicus, P. major, S. japonica, H. typus, S. forsteni, S. pinguis, R. prometheoides, S. japonicus, T. orientalis, T. tonggol, P. olivaceus, H. dubius, M. uradoi, T. pardalis, T snyderi, T. stictonotus
Size 29.9 GB
Paper Information Sakashita M et. al. (2019), J Morphol 280(6), 778-795
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Release 2018-11-15
Title Measurement of contractile force of the muscle
Organism M. sieboldi
Size 272.6 MB
Paper Information Tanaka, Yo et. al. (2017), Sensors and Actuators B: Chemical 242, 1186-1192
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Release 2018-11-14
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Organism M. musculus
Size 90.2 GB
Paper Information Noguchi M et. al. (2015), Cell Rep 13(12), 2679-86
doi: 10.1016/j.celrep.2015.11.058 pmid: 26711336

Release 2018-11-14
Title Image data of of the three-dimensional-retinas from Fstl4
Organism M. musculus
Size 54.9 MB
Paper Information Maekawa Y et. al. (2016), Curr Eye Res 41(4), 558-68
doi: 10.3109/02713683.2015.1038359 pmid: 25880804

Release 2018-11-14
Title Images and quantitative data showing the self-organizing mechanism in mouse multiciliated cells (MCCs)
Organism M. musculus
Size 2.4 GB
Paper Information Herawati E et. al. (2016), J Cell Biol 214(5), 571-86
doi: 10.1083/jcb.201601023 pmid: 27573463

Release 2018-11-14
Title SIM images of tubulin immunofluorescence in Eph4 cells
Organism M. musculus
Size 1.2 MB
Paper Information Yano T et. al. (2013), J Cell Biol 203(4), 605-14
doi: 10.1083/jcb.201304194 pmid: 24385485

Release 2018-11-14
Title Neurogenesis and gliogenesis in WT and Hes5-overexpressing Tg brain
Organism M. musculus
Size 124.7 MB
Paper Information Bansod S et. al. (2017), Development 144(17), 3156-3167
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Release 2018-11-14
Title The basal body position (ABP) of node cells in mouse embryo
Organism M. musculus
Size 5.2 MB
Paper Information Minegishi K et. al. (2017), Dev Cell 40(5), 439-452.e4
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Release 2018-11-14
Title Time-lapse imgaes and quantitative information of propagating wave of ERK activation orients collective cell migration
Organism Canis lupus familiaris
Size 1.4 GB
Paper Information Aoki K et. al. (2017), Dev Cell 43(3), 305-317.e5
doi: 10.1016/j.devcel.2017.10.016 pmid: 29112851

Release 2018-11-14
Title TEM images of the formation of subretinal hyperreflective material and ORTs in the process of pathological changes
Organism H. sapiens
Size 6.7 MB
Paper Information Takagi S et. al. (2017), Clin Ophthalmol 11, 1219-1225
doi: 10.2147/OPTH.S134338 pmid: 28721006

Release 2018-11-14
Title Intracellular distribution of hAK1 and hUB-3A delivered into HeLa cells.
Organism H. sapiens
Size 6.0 MB
Paper Information Inomata K et. al. (2017), Chem Commun (Camb) 53(81), 11245-11248
doi: 10.1039/c7cc06004a pmid: 28960222

Release 2018-11-14
Title Staining image of the autophagy in the wild-type and Treh mutant drosophila
Organism D. melanogaster
Size 4.7 MB
Paper Information Yasugi T et. al. (2017), Sci Rep 7(1), 1619
doi: 10.1038/s41598-017-01754-9 pmid: 28487555

Release 2018-11-14
Title Immunofluorescence images of different type neural progenitor cells (NPCs)
Organism M. musculus
Size 50.4 MB
Paper Information Ikeda T et. al. (2018), Nat Commun 9(1), 1387
doi: 10.1038/s41467-018-03748-1 pmid: 29643333

Release 2018-11-14
Title Modulation of apical constriction by Wnt signaling is required for lung epithelial shape transition
Organism M. musculus
Size 31.0 MB
Paper Information Fumoto K et. al. (2017), Development 144(1), 151-162
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Release 2018-11-14
Title Timelapse images of different types HT29 cells during nocodazole treatment
Organism H. sapiens
Size 638.0 MB
Paper Information Ito S et. al. (2017), Nat Commun 8(1), 1834
doi: 10.1038/s41467-017-01945-y pmid: 29184140

Release 2018-11-14
Title TimeLapse images of Tbr2-EGFP expression in a neural ball
Organism M. musculus
Size 1.8 GB
Paper Information Kosodo Y et. al. (2017), Biochem Biophys Res Commun 483(1), 94-100
doi: 10.1016/j.bbrc.2016.12.187 pmid: 28063930

Release 2018-11-14
Title Images and time-lapse images of spine formation in wild type and CaMKIIaKI hippocampal neurons.
Organism M. musculus
Size 204.9 MB
Paper Information Cornelia Koeberle S et. al. (2017), Sci Rep 7(1), 13409
doi: 10.1038/s41598-017-13728-y pmid: 29042611

Release 2018-11-14
Title Time-lapse images of spine dynamics in patDp/+ or NLG R451C and wild-type mice
Organism M. musculus
Size 2.5 GB
Paper Information Isshiki M et. al. (2014), Nat Commun 5, 4742
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Release 2018-11-14
Title Images of spindle dynamics in different situation
Organism X. laevis, H. sapiens
Size 524.0 KB
Paper Information Ishiwata, Shin'ichi et. al. (2017), Molecular Crystals and Liquid Crystals 647(1), 127-150
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Release 2018-11-14
Title FRET images of AMPK activity in different cells
Organism M. musculus, H. sapiens
Size 1.5 GB
Paper Information Konagaya Y et. al. (2017), Cell Rep 21(9), 2628-2638
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Release 2018-11-14
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Organism H. sapiens
Size 1.0 GB
Paper Information Uda Y et. al. (2017), Proc Natl Acad Sci U S A 114(45), 11962-11967
doi: 10.1073/pnas.1707190114 pmid: 29078307

Release 2018-11-14
Title HE staining images of human and mouse organs with CUBIC
Organism M. musculus, H. sapiens
Size 608.2 MB
Paper Information Nojima S et. al. (2017), Sci Rep 7(1), 9269
doi: 10.1038/s41598-017-09117-0 pmid: 28839164

Release 2018-11-14
Title
Organism D. discoideum AX2
Size 1.0 GB
Paper Information Kamimura Y et. al. (2016), Proc Natl Acad Sci U S A 113(16), 4356-61
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Release 2018-11-14
Title Bright field and NIR fluorescence images of breast tumor mouse injected with ICG-Ab contatining S4-6 micelles or without S4-6 micelles for several time course
Organism M. musculus
Size 4.0 MB
Paper Information Jin, Takashi et. al. (2016), Med. Chem. Commun. 7(4), 623-631
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Release 2018-11-14
Title Bright field and near-infrared fluorescence images of breast tumor-bearing mice injection of glutathione coated QDs or an aqueous solution for several time points
Organism M. musculus
Size 11.3 MB
Paper Information Tsuboi S et. al. (2017), Chem Commun (Camb) 53(68), 9450-9453
doi: 10.1039/c7cc04966h pmid: 28795717

Release 2018-11-14
Title Immunoelectron microscopic images of nakanori distribution in HeLa cells, human skin fibroblasts and NPC cells
Organism H. sapiens
Size 60.2 MB
Paper Information Makino A et. al. (2017), FASEB J 31(4), 1301-1322
doi: 10.1096/fj.201500075R pmid: 27492925

Release 2018-11-07
Title A set of imaging data of neuronal circuits labeling with fluorescent proteins in M. musculus
Organism M. musculus
Size 21.7 GB
Paper Information Sakaguchi R et. al. (2018), Elife 7
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Release 2017-11-14
Title A set of calcium imaging data in the olfactory system of M. musculus adult
Organism M. musculus
Size 30.9 GB
Paper Information Iwata R et. al. (2017), Neuron 96(5), 1139-1152.e7
doi: 10.1016/j.neuron.2017.11.008 pmid: 29216451

Release 2017-10-03
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Organism D. discoideum
Size 1.2 GB
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Release 2017-10-03
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Organism D. melanogaster
Size 50.6 GB
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Release 2017-10-03
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Organism H. sapiens
Size 2.1 MB
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Release 2017-10-03
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Organism H. sapiens
Size 10.5 MB
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Project ssbd-repos-00025 (25-Ke-SeeDB) SSBD:database
25-Ke-SeeDB
Release 2017-10-03
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Organism M. musculus
Size 17.1 GB
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Release 2017-10-03
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Organism M. musculus
Size 105.3 MB
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Release 2017-10-03
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Size 327.0 MB
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Release 2017-10-03
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Organism M. musculus
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Release 2017-10-03
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Organism M. musculus, H. sapiens, D. melanogaster
Size 30.2 GB
Paper Information Ke MT et. al. (2016), Cell Rep 14(11), 2718-32
doi: 10.1016/j.celrep.2016.02.057 pmid: 26972009

Release 2017-10-03
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Organism X. laevis
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Paper Information Inomata H et. al. (2013), Cell 153(6), 1296-311
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Release 2017-10-03
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Organism C. l. familiaris, C. griseus
Size 252.0 MB
Paper Information Matsuda M et. al. (2012), Sci Signal 5(220), ra31
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Release 2017-10-03
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Organism C. griseus
Size 164.6 MB
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Release 2017-10-03
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Organism H. sapiens
Size 805.3 MB
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Release 2017-10-03
Title
Organism C. l. familiaris
Size 104.0 MB
Paper Information Hayashi S and Okada Y (2015), Mol Biol Cell 26(9), 1743-51
doi: 10.1091/mbc.E14-08-1287 pmid: 25717185

Release 2017-10-03
Title
Organism M. musculus, C. l. familiaris, H. sapiens
Size 97.4 MB
Paper Information Yonemura S (2014), PLoS One 9(11), e112922
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Release 2017-10-03
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Size 7.9 GB
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Release 2017-10-03
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Organism C. elegans
Size 1.5 GB
Paper Information Arata Y et. al. (2016), Cell Rep 16(8), 2156-2168
doi: 10.1016/j.celrep.2016.07.047 pmid: 27524610

Release 2017-10-03
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Organism D. cf. damesi (NA)
Size 9.4 GB
Paper Information Inoue S and Kondo S (2016), Sci Rep 6, 33689
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Release 2017-10-03
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Organism D. discoideum
Size 759.1 MB
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Release 2017-10-03
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Organism M. musculus
Size 6.0 GB
Paper Information Sakakibara Y et. al. (2015), Nat Commun 6, 7550
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Release 2017-10-03
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Organism M. musculus
Size 3.9 MB
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Release 2017-10-03
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Organism C. l. familiaris
Size 90.6 MB
Paper Information Takai A et. al. (2015), Proc Natl Acad Sci U S A 112(14), 4352-6
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Release 2017-10-03
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Organism
Size 132.9 MB
Paper Information Hihara S et. al. (2012), Cell Rep 2(6), 1645-56
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Release 2017-10-03
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Organism M. musculus
Size 117.1 GB
Paper Information Susaki EA et. al. (2014), Cell 157(3), 726-39
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Release 2017-10-03
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Organism M. musculus
Size 5.3 GB
Paper Information Susaki EA et. al. (2015), Nat Protoc 10(11), 1709-27
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Release 2017-10-03
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Organism M. musculus
Size 113.4 MB
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Release 2017-10-03
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Organism X. laevis
Size 16.9 MB
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Release 2017-10-03
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Organism M. musculus
Size 320.4 MB
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doi: 10.1038/srep37562 pmid: 27876845

Release 2017-03-17
Title A set of BDML file for digitized cellular dynamics of a C. elegans embryo
Organism C. elegans
Size 76.1 MB
Paper Information Azuma Y and Onami S (2017), BMC Bioinformatics 18(1), 307
doi: 10.1186/s12859-017-1717-6 pmid: 28629355

Release 2016-10-03
Title
Organism C. elegans
Size 8.4 GB
Paper Information Takayama J and Onami S (2016), Cell Rep 15(3), 625-637
doi: 10.1016/j.celrep.2016.03.040 pmid: 27068469

Release 2016-10-03
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Organism M. musculus
Size 4.6 MB
Paper Information Ochiai H et. al. (2015), Nucleic Acids Res 43(19), e127
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Release 2016-10-03
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Organism M. musculus
Size 243.6 MB
Paper Information Tanaka, Yo and Fujita, Hideaki (2015), Sensors and Actuators B: Chemical 210, 267-272
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Release 2016-10-03
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Organism R. norvegicus
Size 157.1 MB
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doi: 10.1016/j.molcel.2013.09.015 pmid: 24140422

Release 2016-10-03
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Organism H. sapiens
Size 111.4 MB
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Release 2016-10-03
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Organism
Size 1.3 GB
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Release 2016-05-22
Title A set of BDML files for quantitative information about neuronal nuclei in C. elegans adult
Organism C. elegans
Size 67.8 MB
Paper Information Toyoshima Y et. al. (2016), PLoS Comput Biol 12(6), e1004970
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Release 2016-01-18
Title
Organism D. discoideum, R. norvegicus
Size 151.4 GB
Paper Information Watabe M et. al. (2015), PLoS One 10(7), e0130089
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Release 2016-01-18
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Organism M. musculus
Size 1.0 MB
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doi: 10.1016/j.celrep.2012.11.012 pmid: 23219549

Release 2015-10-03
Title
Organism D. discoideum
Size 452.4 MB
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Release 2014-10-03
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Organism C. elegans
Size 150.4 MB
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Release 2014-10-03
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Organism M. musculus
Size 158.3 MB
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Release 2014-10-03
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Organism M. musculus
Size 97.0 MB
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Release 2013-10-03
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Organism C. elegans
Size 22.9 MB
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Release 2013-10-03
Title
Organism D. melanogaster
Size 4.0 GB
Paper Information Keller PJ et. al. (2010), Nat Methods 7(8), 637-42
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Release 2013-10-03
Title
Organism D. rerio
Size 48.2 GB
Paper Information Keller PJ et. al. (2008), Science 322(5904), 1065-9
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Release 2013-09-02
Title
Organism C. elegans
Size 1.6 TB
Paper Information Kyoda K et. al. (2013), Nucleic Acids Res 41(Database issue), D732-7
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Release 2013-09-02
Title
Organism E. coli
Size 190.8 MB
Paper Information Arjunan SN and Tomita M (2010), Syst Synth Biol 4(1), 35-53
doi: 10.1007/s11693-009-9047-2 pmid: 20012222

Release
Title Integrative analysis reveals early epigenetic alterations in high-grade serous ovarian carcinomas
Organism Homo sapiens
Size 47.4 MB
Paper Information Machino H et. al. (2023), Exp Mol Med
doi: 10.1038/s12276-023-01090-1 pmid: 37779141