SSBD:database

Thumbnail for 150-Abe-SomiteDev

Summary of 150-Abe-SomiteDev

SSBD:database
150-Abe-SomiteDev
SSBD:database URL
https://ssbd.riken.jp/database/150-Abe-SomiteDev/
SSBD:repository
ssbd-repos-000150
SSBD:repository URL
https://ssbd.riken.jp/repository/150/
Title
Immunostaining or timelapse images of observation of horizontal boundary cells (HBCs) at different somite stage in medaka embryo
Description
-
Release date
2020-12-23
Updated date
-
License
CC BY
Kind
Image data based on Experiment
Number of Datasets
18 ( Image datasets: 18, Quantitative data datasets: 0 )
Size of Datasets
145.4 MB ( Image datasets: 145.4 MB, Quantitative data datasets: 0 bytes )
Organism(s)
Oryzias
Strain(s)
Medaka: Tg(b-actin:DsRed, Medaka: Tg(eng2a:mCherry), Medaka:Tg(Zic1:GFP/Zic4:DsRed)
Gene symbol(s)
zic1
Protein name(s)
b-actin
Protein tag(s)
GFP
Reporter(s)
DsRed
Datatype
-
Molecular Function (MF)
somite development
Biological Process (BP)
somite development
Cellular Component (CC)
antibody, dendritic shaft
Biological Imaging Method
transmission electron microscopy, time lapse microscopy, confocal microscopy, antibody, fluorescence microscopy
X scale
0.3095876 micrometer/pixel, 0.6918882 micrometer/pixel, 0.8302658 micrometer/pixel, 0.4151329 micrometer/pixel, 0.0033333 inch/pixel, NA
Y scale
0.3095876 micrometer/pixel, 0.6918882 micrometer/pixel, 0.8302658 micrometer/pixel, 0.4151329 micrometer/pixel, 0.0033333 inch/pixel, NA
Z scale
1 micrometer/slice, 1.082 micrometer/pixel, 1 micrometer/pixel, 1.8594732 micrometer/slice, NA
T scale
-
Image Acquisition
Experiment type
-
Microscope type
-
Acquisition mode
-
Contrast method
-
Microscope model
-
Detector model
-
Objective model
-
Filter set
-
Related paper(s)
Contact
Hiroyuki Takeda , Graduate School of Science, University of Tokyo , Department of Biological Sciences
Contributors
NA

Dataset List of 150-Abe-SomiteDev

Thumbnail
#
Dataset ID
Kind
Size
4D View
SSBD:OMERO
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Thumbnail Thumbnail for dataset Figure1B_somite_lateral
# 5013
Datast ID Figure1B_somite_lateral
Dataset Kind Image data
Dataset Size 26.4 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Figure1G_HBCs_zic1
# 5014
Datast ID Figure1G_HBCs_zic1
Dataset Kind Image data
Dataset Size 9.4 MB
4D view
SSBD:OMERO
Download BDML
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Thumbnail Thumbnail for dataset Figure1HIJK_somite_optical
# 5015
Datast ID Figure1HIJK_somite_optical
Dataset Kind Image data
Dataset Size 32.0 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Figure2B_dorsal_16ss
# 5016
Datast ID Figure2B_dorsal_16ss
Dataset Kind Image data
Dataset Size 1.1 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Figure2C_dorsal_24ss
# 5017
Datast ID Figure2C_dorsal_24ss
Dataset Kind Image data
Dataset Size 1.2 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset FigureS1B_Tg_zic1_0min
# 5018
Datast ID FigureS1B_Tg_zic1_0min
Dataset Kind Image data
Dataset Size 3.9 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset FigureS1B_Tg_zic1_160min
# 5019
Datast ID FigureS1B_Tg_zic1_160min
Dataset Kind Image data
Dataset Size 3.9 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset FigureS1B_Tg_zic1_200min
# 5020
Datast ID FigureS1B_Tg_zic1_200min
Dataset Kind Image data
Dataset Size 3.9 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset FigureS2B_trunk_4days
# 5021
Datast ID FigureS2B_trunk_4days
Dataset Kind Image data
Dataset Size 4.0 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset FigureS2C_trunk_4days_magnified1
# 5022
Datast ID FigureS2C_trunk_4days_magnified1
Dataset Kind Image data
Dataset Size 4.0 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset FigureS2C_trunk_4days_magnified2
# 5023
Datast ID FigureS2C_trunk_4days_magnified2
Dataset Kind Image data
Dataset Size 4.0 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset FigureS2D_trunk_4days_magnified
# 5024
Datast ID FigureS2D_trunk_4days_magnified
Dataset Kind Image data
Dataset Size 4.0 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset FigureS3K_control_5dpf
# 5025
Datast ID FigureS3K_control_5dpf
Dataset Kind Image data
Dataset Size 7.9 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset FigureS3K_control_30ss
# 5026
Datast ID FigureS3K_control_30ss
Dataset Kind Image data
Dataset Size 7.9 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset FigureS3K_control_35ss
# 5027
Datast ID FigureS3K_control_35ss
Dataset Kind Image data
Dataset Size 7.9 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset FigureS3K_cyc_5dpf
# 5028
Datast ID FigureS3K_cyc_5dpf
Dataset Kind Image data
Dataset Size 7.9 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset FigureS3K_cyc_30ss
# 5029
Datast ID FigureS3K_cyc_30ss
Dataset Kind Image data
Dataset Size 7.9 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset FigureS3K_cyc_35ss
# 5030
Datast ID FigureS3K_cyc_35ss
Dataset Kind Image data
Dataset Size 7.9 MB
4D view
SSBD:OMERO
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