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Thumbnail for 296-Kawabata-MouseBrainShape

Summary of 296-Kawabata-MouseBrainShape

SSBD:database
296-Kawabata-MouseBrainShape
SSBD:database URL
https://ssbd.riken.jp/database/296-Kawabata-MouseBrainShape/
DOI
https://doi.org/10.24631/ssbd.db.2023.05.296
SSBD:repository
ssbd-repos-000296
SSBD:repository URL
https://ssbd.riken.jp/repository/296/
Title
Image processing and manual annotation data of mouse brains with neurogenic-tagged neurons from NeuroGT database
Description
Segmentation results of brain contours and tagged neurons for 168 imaging data sets provided from NeuroGT database and manual annotation data of anatomical regions (isocortex, olfactory area, hippocampal formation, cerebral nuclei, interbrain, midbrain, hindbrain, and cerebellum) for images (131 images for the G2AN_TM11.5_L dataset and 10 images each for the other datasets) targeted mouse brains for evaluation
Release date
2023-05-09
Updated date
2023-05-29
Errata
2023/05/29 All BDML/BD5 data was updated cause of some format error in BD5
License
CC BY
Kind
Quantitative data based on Experiment
Number of Datasets
168 ( Image datasets: 0, Quantitative data datasets: 168 )
Size of Datasets
100.2 GB ( Image datasets: 0 bytes, Quantitative data datasets: 100.2 GB )
Organism(s)
Mus musculus
Strain(s)
C57BL/6 Neurod1^{CreER}(D1B); Tau^{mGFP-nLacZ}, C57BL/6 neuroG2^{CreER}(G2A); Tau^{mGFP-nLacZ}, C57BL/6 Neurod4^{CreER}(D4A); Tau^{mGFP-nLacZ}, C57BL/6 Neurog1^{CreER}(G1C); Tau^{mGFP-nLacZ}
Datatype
-
Molecular Function (MF)
Biological Process (BP)
nervous system development
Cellular Component (CC)
neuron projection, plasma membrane
Biological Imaging Method
chemically fixed tissue, horseradish peroxidase, bright-field microscopy, cryostat-sectioned tissue
X scale
1.0 micrometer/pixel
Y scale
1.0 micrometer/pixel
Z scale
20 micrometer/slice
T scale
-
Image Acquisition
Experiment type
-
Microscope type
-
Acquisition mode
-
Contrast method
-
Microscope model
-
Detector model
-
Objective model
-
Filter set
-
Related paper(s)
Contact
Yukako Tohsato , Ritsumeikan University , Faculty of Information Science and Engineering , Laboratory of compubational biology
Contributors
Hiroto Kawabata, Yuki Shimojo, Tatsumi Hirata, Yukako Tohsato

Dataset List of 296-Kawabata-MouseBrainShape

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#
Dataset ID
Kind
Size
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Thumbnail Thumbnail for dataset ImageProcessingResult_D1BN_TM9.5_G
# 10497
Datast ID ImageProcessingResult_D1BN_TM9.5_G
Dataset Kind Quantitative data
Dataset Size 5.6 GB
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Thumbnail Thumbnail for dataset ImageProcessingResult_D1BN_TM9.5_L
# 10498
Datast ID ImageProcessingResult_D1BN_TM9.5_L
Dataset Kind Quantitative data
Dataset Size 95.1 MB
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Thumbnail Thumbnail for dataset ImageProcessingResult_D1BN_TM10.5_G
# 10499
Datast ID ImageProcessingResult_D1BN_TM10.5_G
Dataset Kind Quantitative data
Dataset Size 2.5 GB
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Thumbnail Thumbnail for dataset ImageProcessingResult_D1BN_TM10.5_L
# 10500
Datast ID ImageProcessingResult_D1BN_TM10.5_L
Dataset Kind Quantitative data
Dataset Size 89.5 MB
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Thumbnail Thumbnail for dataset ImageProcessingResult_D1BN_TM11.5_G
# 10501
Datast ID ImageProcessingResult_D1BN_TM11.5_G
Dataset Kind Quantitative data
Dataset Size 3.9 GB
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Thumbnail Thumbnail for dataset ImageProcessingResult_D1BN_TM11.5_L
# 10502
Datast ID ImageProcessingResult_D1BN_TM11.5_L
Dataset Kind Quantitative data
Dataset Size 137.2 MB
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Thumbnail Thumbnail for dataset ImageProcessingResult_D1BN_TM12.5_G
# 10503
Datast ID ImageProcessingResult_D1BN_TM12.5_G
Dataset Kind Quantitative data
Dataset Size 5.0 GB
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Thumbnail Thumbnail for dataset ImageProcessingResult_D1BN_TM12.5_L
# 10504
Datast ID ImageProcessingResult_D1BN_TM12.5_L
Dataset Kind Quantitative data
Dataset Size 124.0 MB
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Thumbnail Thumbnail for dataset ImageProcessingResult_D1BN_TM13.5_G
# 10505
Datast ID ImageProcessingResult_D1BN_TM13.5_G
Dataset Kind Quantitative data
Dataset Size 7.7 GB
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Thumbnail Thumbnail for dataset ImageProcessingResult_D1BN_TM13.5_L
# 10506
Datast ID ImageProcessingResult_D1BN_TM13.5_L
Dataset Kind Quantitative data
Dataset Size 98.8 MB
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Thumbnail Thumbnail for dataset ImageProcessingResult_D1BN_TM14.5_G
# 10507
Datast ID ImageProcessingResult_D1BN_TM14.5_G
Dataset Kind Quantitative data
Dataset Size 4.8 GB
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Thumbnail Thumbnail for dataset ImageProcessingResult_D1BN_TM14.5_L
# 10508
Datast ID ImageProcessingResult_D1BN_TM14.5_L
Dataset Kind Quantitative data
Dataset Size 99.0 MB
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Thumbnail Thumbnail for dataset ImageProcessingResult_D1BN_TM15.5_G
# 10509
Datast ID ImageProcessingResult_D1BN_TM15.5_G
Dataset Kind Quantitative data
Dataset Size 406.1 MB
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Thumbnail Thumbnail for dataset ImageProcessingResult_D1BN_TM15.5_L
# 10510
Datast ID ImageProcessingResult_D1BN_TM15.5_L
Dataset Kind Quantitative data
Dataset Size 89.2 MB
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Thumbnail Thumbnail for dataset ImageProcessingResult_D1BN_TM16.5_G
# 10511
Datast ID ImageProcessingResult_D1BN_TM16.5_G
Dataset Kind Quantitative data
Dataset Size 4.1 GB
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Thumbnail Thumbnail for dataset ImageProcessingResult_D1BN_TM16.5_L
# 10512
Datast ID ImageProcessingResult_D1BN_TM16.5_L
Dataset Kind Quantitative data
Dataset Size 124.5 MB
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Thumbnail Thumbnail for dataset ImageProcessingResult_D1BN_TM17.5_G
# 10513
Datast ID ImageProcessingResult_D1BN_TM17.5_G
Dataset Kind Quantitative data
Dataset Size 13.4 GB
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Thumbnail Thumbnail for dataset ImageProcessingResult_D1BN_TM17.5_L
# 10514
Datast ID ImageProcessingResult_D1BN_TM17.5_L
Dataset Kind Quantitative data
Dataset Size 142.6 MB
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Thumbnail Thumbnail for dataset ImageProcessingResult_D1BN_woTM_G
# 10515
Datast ID ImageProcessingResult_D1BN_woTM_G
Dataset Kind Quantitative data
Dataset Size 2.6 GB
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Thumbnail Thumbnail for dataset ImageProcessingResult_D1BN_woTM_L
# 10516
Datast ID ImageProcessingResult_D1BN_woTM_L
Dataset Kind Quantitative data
Dataset Size 95.4 MB
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Thumbnail Thumbnail for dataset ImageProcessingResult_D4AN_TM8.5_G
# 10517
Datast ID ImageProcessingResult_D4AN_TM8.5_G
Dataset Kind Quantitative data
Dataset Size 248.3 MB
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Thumbnail Thumbnail for dataset ImageProcessingResult_D4AN_TM8.5_L
# 10518
Datast ID ImageProcessingResult_D4AN_TM8.5_L
Dataset Kind Quantitative data
Dataset Size 2.0 GB
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Thumbnail Thumbnail for dataset ImageProcessingResult_D4AN_TM9.5_G
# 10519
Datast ID ImageProcessingResult_D4AN_TM9.5_G
Dataset Kind Quantitative data
Dataset Size 1.5 GB
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Thumbnail Thumbnail for dataset ImageProcessingResult_D4AN_TM9.5_L
# 10520
Datast ID ImageProcessingResult_D4AN_TM9.5_L
Dataset Kind Quantitative data
Dataset Size 217.3 MB
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Thumbnail Thumbnail for dataset ImageProcessingResult_D4AN_TM10.5_G
# 10521
Datast ID ImageProcessingResult_D4AN_TM10.5_G
Dataset Kind Quantitative data
Dataset Size 2.1 GB
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Thumbnail Thumbnail for dataset ImageProcessingResult_D4AN_TM10.5_L
# 10522
Datast ID ImageProcessingResult_D4AN_TM10.5_L
Dataset Kind Quantitative data
Dataset Size 305.7 MB
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Thumbnail Thumbnail for dataset ImageProcessingResult_D4AN_TM11.5_G
# 10523
Datast ID ImageProcessingResult_D4AN_TM11.5_G
Dataset Kind Quantitative data
Dataset Size 1.2 GB
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Thumbnail Thumbnail for dataset ImageProcessingResult_D4AN_TM11.5_L
# 10524
Datast ID ImageProcessingResult_D4AN_TM11.5_L
Dataset Kind Quantitative data
Dataset Size 467.5 MB
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Thumbnail Thumbnail for dataset ImageProcessingResult_D4AN_TM12.5_G
# 10525
Datast ID ImageProcessingResult_D4AN_TM12.5_G
Dataset Kind Quantitative data
Dataset Size 901.8 MB
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Thumbnail Thumbnail for dataset ImageProcessingResult_D4AN_TM12.5_L
# 10526
Datast ID ImageProcessingResult_D4AN_TM12.5_L
Dataset Kind Quantitative data
Dataset Size 358.2 MB
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Thumbnail Thumbnail for dataset ImageProcessingResult_D4AN_TM13.5_G
# 10527
Datast ID ImageProcessingResult_D4AN_TM13.5_G
Dataset Kind Quantitative data
Dataset Size 388.8 MB
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Thumbnail Thumbnail for dataset ImageProcessingResult_D4AN_TM13.5_L
# 10528
Datast ID ImageProcessingResult_D4AN_TM13.5_L
Dataset Kind Quantitative data
Dataset Size 275.3 MB
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Thumbnail Thumbnail for dataset ImageProcessingResult_D4AN_TM14.5_G
# 10529
Datast ID ImageProcessingResult_D4AN_TM14.5_G
Dataset Kind Quantitative data
Dataset Size 195.2 MB
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Thumbnail Thumbnail for dataset ImageProcessingResult_D4AN_TM14.5_L
# 10530
Datast ID ImageProcessingResult_D4AN_TM14.5_L
Dataset Kind Quantitative data
Dataset Size 108.2 MB
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Thumbnail Thumbnail for dataset ImageProcessingResult_D4AN_TM15.5_G
# 10531
Datast ID ImageProcessingResult_D4AN_TM15.5_G
Dataset Kind Quantitative data
Dataset Size 295.5 MB
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Thumbnail Thumbnail for dataset ImageProcessingResult_D4AN_TM15.5_L
# 10532
Datast ID ImageProcessingResult_D4AN_TM15.5_L
Dataset Kind Quantitative data
Dataset Size 311.1 MB
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Thumbnail Thumbnail for dataset ImageProcessingResult_D4AN_TM16.5_G
# 10533
Datast ID ImageProcessingResult_D4AN_TM16.5_G
Dataset Kind Quantitative data
Dataset Size 216.8 MB
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Thumbnail Thumbnail for dataset ImageProcessingResult_D4AN_TM16.5_L
# 10534
Datast ID ImageProcessingResult_D4AN_TM16.5_L
Dataset Kind Quantitative data
Dataset Size 302.1 MB
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Thumbnail Thumbnail for dataset ImageProcessingResult_D4AN_TM17.5_G
# 10535
Datast ID ImageProcessingResult_D4AN_TM17.5_G
Dataset Kind Quantitative data
Dataset Size 89.7 MB
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Thumbnail Thumbnail for dataset ImageProcessingResult_D4AN_TM17.5_L
# 10536
Datast ID ImageProcessingResult_D4AN_TM17.5_L
Dataset Kind Quantitative data
Dataset Size 85.2 MB
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Thumbnail Thumbnail for dataset ImageProcessingResult_D4AN_woTM_G
# 10537
Datast ID ImageProcessingResult_D4AN_woTM_G
Dataset Kind Quantitative data
Dataset Size 157.8 MB
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Thumbnail Thumbnail for dataset ImageProcessingResult_D4AN_woTM_L
# 10538
Datast ID ImageProcessingResult_D4AN_woTM_L
Dataset Kind Quantitative data
Dataset Size 681.8 MB
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Thumbnail Thumbnail for dataset ImageProcessingResult_G1CN_TM9.5_G
# 10539
Datast ID ImageProcessingResult_G1CN_TM9.5_G
Dataset Kind Quantitative data
Dataset Size 378.4 MB
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Thumbnail Thumbnail for dataset ImageProcessingResult_G1CN_TM9.5_L
# 10540
Datast ID ImageProcessingResult_G1CN_TM9.5_L
Dataset Kind Quantitative data
Dataset Size 127.7 MB
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Thumbnail Thumbnail for dataset ImageProcessingResult_G1CN_TM10.5_G
# 10541
Datast ID ImageProcessingResult_G1CN_TM10.5_G
Dataset Kind Quantitative data
Dataset Size 1.6 GB
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Thumbnail Thumbnail for dataset ImageProcessingResult_G1CN_TM10.5_L
# 10542
Datast ID ImageProcessingResult_G1CN_TM10.5_L
Dataset Kind Quantitative data
Dataset Size 158.0 MB
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Thumbnail Thumbnail for dataset ImageProcessingResult_G1CN_TM11.5_G
# 10543
Datast ID ImageProcessingResult_G1CN_TM11.5_G
Dataset Kind Quantitative data
Dataset Size 194.7 MB
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Thumbnail Thumbnail for dataset ImageProcessingResult_G1CN_TM11.5_L
# 10544
Datast ID ImageProcessingResult_G1CN_TM11.5_L
Dataset Kind Quantitative data
Dataset Size 182.1 MB
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Thumbnail Thumbnail for dataset ImageProcessingResult_G1CN_TM12.5_G
# 10545
Datast ID ImageProcessingResult_G1CN_TM12.5_G
Dataset Kind Quantitative data
Dataset Size 325.4 MB
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Thumbnail Thumbnail for dataset ImageProcessingResult_G1CN_TM12.5_L
# 10546
Datast ID ImageProcessingResult_G1CN_TM12.5_L
Dataset Kind Quantitative data
Dataset Size 110.9 MB
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