Summary of 309-Fujioka-RamanProbe

SSBD:database
SSBD:database URL
Title
Detection of multiple enzyme activities simultaneously in live cells by using activatable Raman probes
Description
-
Relase date
2024-11-25
Updated date
-
License
CC BY
Kind
Image data based on Experiment
Number of Datasets
16 ( Image datasets: 16, Quantitative data datasets: 0 )
Size of Datasets
84.9 MB ( Image datasets: 84.9 MB, Quantitative data datasets: 0 bytes )

Organism(s)
Homo sapiens, Drosophila
Cell lines(s)
HEK-LacZ, HEK293, NCl-H226 (CLO_0008068), A549 cell
Gene symbol(s)
NA
Protein name(s)
NA

Datatype
-
Molecular Function (MF)
beta-galactosidase activity
Biological Process (BP)
Cellular Component (CC)
Biological Imaging Method
fluorescence microscopy, stimulated Raman scattering (SRS) imaging
T scale
-

Image Acquisition
Experiment type
-
Microscope type
-
Acquisition mode
-
Contrast method
-
Microscope model
-
Detector model
-
Objective model
-
Filter set
-

Related paper(s)

Hiroyoshi Fujioka, Minoru Kawatani, Spencer John Spratt, Ayumi Komazawa, Yoshihiro Misawa, Jingwen Shou, Takaha Mizuguchi, Hina Kosakamoto, Ryosuke Kojima, Yasuteru Urano, Fumiaki Obata, Yasuyuki Ozeki, Mako Kamiya (2023) Activatable Raman Probes Utilizing Enzyme-Induced Aggregate Formation for Selective Ex Vivo Imaging., Journal of the American Chemical Society

Published in 2023 Apr 14 (Electronic publication in April 14, 2023, midnight )

(Abstract) Detecting multiple enzyme activities simultaneously with high spatial specificity is a promising strategy to investigate complex biological phenomena, and Raman imaging would be an excellent tool for this purpose due to its high multiplexing capabilities. We previously developed activatable Raman probes based on 9CN-pyronins, but specific visualization of cells with target enzyme activities proved difficult due to leakage of the hydrolysis products from the target cells after activation. Here, focusing on rhodol bearing a nitrile group at the position of 9 (9CN-rhodol), we established a novel mechanism for Raman signal activation based on a combination of aggregate formation (to increase local dye concentration) and the resonant Raman effect along with the bathochromic shift of the absorption, and utilized it to develop Raman probes. We selected the 9CN-rhodol derivative 9CN-JCR as offering a suitable combination of increased stimulated Raman scattering (SRS) signal intensity and high aggregate-forming ability, resulting in good retention in target cells after probe activation. By using isotope-edited 9CN-JCR-based probes, we could simultaneously detect beta-galactosidase, gamma-glutamyl transpeptidase, and dipeptidyl peptidase-4 activities in live cultured cells and distinguish cell regions expressing target enzyme activity in Drosophila wing disc and fat body ex vivo.

Contact
Mako Kamiya , Tokyo Institute of Technology , Department of Life Science and Technology
Contributors


Dataset List of 309-Fujioka-RamanProbe

#
Dataset ID
Kind
Size
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# 11534
Datast ID Fig3c_HEK_betaGal
Dataset Kind Image data
Dataset Size 977.1 KB
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SSBD:OMERO
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# 11535
Datast ID Fig4c_A549
Dataset Kind Image data
Dataset Size 1.9 MB
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SSBD:OMERO
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# 11536
Datast ID Fig4c_H226
Dataset Kind Image data
Dataset Size 1.9 MB
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SSBD:OMERO
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# 11537
Dataset Kind Image data
Dataset Size 978.6 KB
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SSBD:OMERO
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# 11538
Dataset Kind Image data
Dataset Size 978.5 KB
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SSBD:OMERO
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# 11539
Dataset Kind Image data
Dataset Size 978.6 KB
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SSBD:OMERO
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# 11540
Dataset Kind Image data
Dataset Size 978.7 KB
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SSBD:OMERO
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# 11541
Datast ID FigS19_HEK_betaGal
Dataset Kind Image data
Dataset Size 488.5 KB
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SSBD:OMERO
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# 11542
Datast ID FigS22_betaGal
Dataset Kind Image data
Dataset Size 1.4 MB
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SSBD:OMERO
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# 11543
Dataset Kind Image data
Dataset Size 977.1 KB
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SSBD:OMERO
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# 11544
Datast ID FigS24_HEK293
Dataset Kind Image data
Dataset Size 977.1 KB
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SSBD:OMERO
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# 11545
Dataset Kind Image data
Dataset Size 22.9 MB
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SSBD:OMERO
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# 11546
Dataset Kind Image data
Dataset Size 45.8 MB
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SSBD:OMERO
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# 11547
Dataset Kind Image data
Dataset Size 1.4 MB
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SSBD:OMERO
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# 11548
Dataset Kind Image data
Dataset Size 1.4 MB
4D view
SSBD:OMERO
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# 11549
Dataset Kind Image data
Dataset Size 977.1 KB
4D view
SSBD:OMERO
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