SSBD:database

# Project Organism(s) Datatype BasedOn # of image datasets # of qunatitative datasets Paper
1 1-Bao-WormEmbryo C. elegans nuclear division dynamics Experiment 0 1 Proc Natl Acad Sci U S A103(8):2707-12
2 2-Kyoda-WormEmbryoRNAi C. elegans nuclear division dynamics Experiment 187 186 Nucleic Acids Res41(Database issue):D732-7
4 4-Keller-FlyEmbryo D. melanogaster nuclear positions Experiment 0 2 Nat Methods7(8):637-42
5 5-Keller-FishEmbryo D. rerio nuclear positions Experiment 0 7 Science322(5904):1065-9
6 6-Arjunan-MolDyn E. coli single molecule dynamics Simulation 0 1 Syst Synth Biol4(1):35-53
7 7-Cronin-WormLocomotion C. elegans behavior Experiment 0 11 BMC Genet6:5
8 8-Bashar-MouseEmbryo M. musculus nuclear positions Experiment 1 1 PLoS One7(5):e35550
9 9-Masumoto-Transcriptome M. musculus gene expression data Experiment 0 8 Curr Biol20(24):2199-206
10 10-Komatsuzaki-MolDyn D. discoideum single molecule dynamics Experiment 1 1 Small11(12):1396-401
11 11-Toyoshima-NeuAct C. elegans neuronal nuclear dynamics Experiment 14 14 PLoS Comput Biol12(6):e1004970
12 12-Takayama-Oocyte C. elegans oocyte shape dynamics Experiment 119 119 Cell Rep15(3):625-637
13 13-Watabe-MolDyn D. discoideum, R. norvegicus single molecule dynamics Simulation, Experiment 2 4 PLoS One10(7):e0130089
14 14-Ochiai-MolDynMS2 M. musculus gene expression dynamics Experiment 1 0 Nucleic Acids Res43(19):e127
15 15-Harima-GeneExp M. musculus gene expression data Experiment 2 2 Cell Rep3(1):1-7
16 16-Tanaka-FluidDyn M. musculus fluid dynamics, cell dynamics Experiment 4 2 Sensors and Actuators B: Chemical,Volume 210,2015,Pages 267-272,ISSN 0925-4005,
17 17-Aoki-MolDyn R. norvegicus cell dynamics Experiment 2 0 Mol Cell52(4):529-40
18 18-Kunida-MolDynRho H. sapiens cell dynamics Experiment 2 0 J Cell Sci125(Pt 10):2381-92
19 19-Tanaka-FluidDyn fluid dynamics Experiment 1 0 Micromachines 5, 289–299.
20 20-Azuma-WormMembrane C. elegans cellular dynamics Experiment 1 1 BMC Bioinformatics18(1):307
21 21-Yasui-MolDynPTEN D. discoideum single molecule dynamics Experiment 13 0 PLoS Comput Biol10(9):e1003817
22 22-Kondo-CellDyn D. melanogaster cell dynamics Experiment 16 0 Nature494(7435):125-9
23 23-Shirai-ESCellTissue H. sapiens tissue structure Experiment 2 0 Proc Natl Acad Sci U S A113(1):E81-90
24 24-Kanemura-iPSCellDyn H. sapiens cell dynamics Experiment 4 0 Sci Rep3:2334
25 25-Ke-SeeDB M. musculus neuron structure Experiment 52 0 Nat Neurosci16(8):1154-61
26 26-Kinoshita-iPSCellDyn M. musculus cell dynamics Experiment 2 0 Invest Ophthalmol Vis Sci57(1):153-61
27 27-Iwasaki-iPSCellDyn M. musculus cell/tissue structure Experiment 13 0 PLoS One11(7):e0158282
28 28-Assawachananont-iPSCellTissue M. musculus tissue structure Experiment 8 0 Stem Cell Reports2(5):662-74
29 29-Ke-SeeDB2 M. musculus, H. sapiens, D. melanogaster neuron structure Experiment 58 0 Cell Rep14(11):2718-32
30 30-Inomata-CellDyn X. laevis cell dynamics Experiment 5 0 Cell153(6):1296-311
31 31-Matsuda-SigDyn C. l. familiaris, C. griseus cell dynamics Experiment 3 0 Sci Signal5(220):ra31
32 32-Matsuda-SigDyn C. griseus cell dynamics Experiment 2 0 Nat Commun6:6195
33 33-Yamao-MolDynRho H. sapiens cell dynamics Experiment 19 0 Sci Rep5:17527
34 34-Hayashi-CellDynSDSRM C. l. familiaris organelle dynamics Experiment 3 0 Mol Biol Cell26(9):1743-51
35 35-Yonemura-CellDyn C. l. familiaris, M. musculus, H. sapiens cell dynamics Experiment 3 0 PLoS One9(11):e112922
36 36-Torisawa-MolDynEg5 microtubule dynamics Experiment 3 0 Biophys J111(2):373-385
37 37-Arata-MolDynPar2 C. elegans single molecule dynamics Experiment 3 3 Cell Rep16(8):2156-2168
38 38-Inoue-ShellStruct D. cf. damesi (NA) strucure Experiment 7 0 Sci Rep6:33689
39 39-Shibata-MolDynPTEN D. discoideum cell dynamics Experiment 2 2 J Cell Sci125(Pt 21):5138-50
40 40-Sakakibara-KTDyn M. musculus kinetochore dynamics Experiment 3 1 Nat Commun6:7550
41 41-Hirata-XChrHiC M. musculus chromosome structure Experiment 0 11 Sci Rep6:34982
42 42-Hayashi-NeuronalCellDyn Rattus novegicus neuron cell dynamics Experiment 0 198 Mol Biol Cell29(25):3017-3025
43 43-Takai-SubcellStructONL C. l. familiaris lysosomes dynamics, peroxisomes dynamics Experiment 2 2 Proc Natl Acad Sci U S A112(14):4352-6
44 44-Hihara-NucleosomeDyn single molecule dynamics Simulation 0 3 Cell Rep2(6):1645-56
47 47-Noguchi-CellDyn M. musculus cell dynamics Experiment 38 0 Cell Rep13(12):2679-86
48 48-Susaki-MouseBrainCUBIC M. musculus organ structure Experiment 27 0 Cell157(3):726-39
49 49-Susaki-MouseBrainCUBIC M. musculus organ structure Experiment 1 0 Nat Protoc10(11):1709-27
50 50-Tainaka-MouseBodyCUBIC M. musculus organ structure Experiment 40 0 Cell159(4):911-24
52 52-Suzuki-FrogTailDyn X. laevis cell dynamics Experiment 1 0 Genes Cells21(4):358-69
53 53-Ichimura-CellDyn M. musculus cell dynamics Experiment 4 0 Sci Rep6:37562
55 55-Maekawa-ESCellDyn M. musculus tissue structure Experiment 2 0 Curr Eye Res41(4):558-68
57 57-Herawati-CellDyn M. musculus epithelial cells dynamics Experiment 23 1 J Cell Biol214(5):571-86
59 59-Yano-MicrotubuleImmuno M. musculus Microtubule immunofluorescence Experiment 1 0 J Cell Biol203(4):605-14
66 66-Iwata-CellDynOSNMT M. musculus calcium imaging data Experiment 2403 0 Neuron96(5):1139-1152.e7
68 68-Sakaguchi-NeuronFluo M. musculus neuronal morphology Experiment 67 0 Elife7
73 73-Fujii-NeuronalMolDynCa2 molecular dynamics Simulation 0 100 Biophys J112(4):813-826
74 74-Bansod-NSCellHes5 M. musculus cell dynamics Experiment 64 0 Development144(17):3156-3167
75 75-Minegishi-NodeCell M. musculus cell tissue Experiment 4 0 Dev Cell40(5):439-452.e4
76 76-Tanaka-MuscleDyn M. sieboldi Muscle dynamics Experiment 0 2 Sensors and Actuators B: Chemical, Volume 242, 2017, Pages 1186-1192.
77 77-Aoki-CellDynERK M. musculus cell dynamics Experiment 14 2 Dev Cell43(3):305-317.e5
78 78-Takagi-CellDyn H. sapiens cell dynamics Experiment 8 0 Clin Ophthalmol11:1219-1225
79 79-Inomata-HeLaCell H. sapiens intracellular structure Experiment 8 0 Chem Commun (Camb)53(81):11245-11248
81 81-Yasugi-DmeCellDyn D. melanogaster LysoTracker-positive vesicle, nucleus Experiment 4 0 Sci Rep7(1):1619
82 82-Ikeda-GeneExp M. musculus gene expression Experiment 9 0 Nat Commun9(1):1387
83 83-Fumoto-LungDevWnt M. musculus organ formation Experiment 18 0 Development144(1):151-162
84 84-Ito-CellDyn H. sapiens cell dynamics Experiment 7 0 Nat Commun8(1):1834
85 85-Kosodo-NeuralballDyn M. musculus Dynamics of neural ball shape and neural differentiation Experiment 3 0 Biochem Biophys Res Commun483(1):94-100
86 86-Higashi-SynapseDyn Mus musculus synapse dynamics Experiment 16 0 Cell Rep22(4):919-929
87 87-CorneliaKoeverle-SpineDyn M. musculus spine dynamics Experiment 30 2 Sci Rep7(1):13409
89 89-Isshiki-SpineDyn M. musculus spine dynamics Experiment 40 0 Nat Commun5:4742
90 90-Ishiwata-SpindleDyn X. laevis, H. sapiens spindle dynamics Experiment 3 0
91 91-Konagaya-AMPKactivity M. musculus, H. sapiens Cell dynamic Experiment 6 0 Cell Rep21(9):2628-2638
92 92-Uda-CellsigDyn H. sapiens cell signaling dynamics Experiment 21 0 Proc Natl Acad Sci U S A114(45):11962-11967
94 94-Matsuda-Beetlehorn Trypoxylus dichotomus horn primordia dynamic Experiment 5 0 Sci Rep7(1):13939
95 95-Nojima-CellMorphology M. musculus, H. sapiens cell morphology Experiment 114 0 Sci Rep7(1):9269
96 96-Kamimura-ChemotaxisDyn D. discoideum AX2 dynamic of eukaryotic chemotaxis Experiment 5 0 Proc Natl Acad Sci U S A113(16):4356-61
98 98-Morita-ToothEpiCellDyn M. muculus tooth epithelium deformation Experiment 5 1 PLoS One11(9):e0161336
99 99-Takagi-HairRegiPSCell M. musculus hair regeneration Experiment 6 0 Sci Adv2(4):e1500887
100 100-Yamamoto-ToothDev M. muculus tooth dynamics Experiment 7 0 Sci Rep5:18393
101 101-Oshima-ToothBioImplant M. musculus tissue structure Experiment 8 0 Sci Rep4:6044
102 102-Ogawa-SalivaryGlandDev M. musculus generation of salivary gland Experiment 6 0 Nat Commun4:2498
103 103-Hirayama-GlandReg M. musculus gland regeneration Experiment 24 0 Nat Commun4:2497
104 104-Bin-SkinImmuno M. musculus immnocytochemistry of skin Experiment 5 0 Proc Natl Acad Sci U S A114(46):12243-12248
105 105-Ono-ToothDev Canis lupus familiaris tooth development Experiment 9 0 Sci Rep7:44522
106 106-Jin-BreastTumorFlu M. musculus breast tumor fluorescence Experiment 8 0 Med. Chem. Commun., 2016, 7, 623-631
107 107-Tsuboi-BreastTumorFlu M. musculus breast tumor fluorescence Experiment 13 0 Chem Commun (Camb)53(68):9450-9453
108 108-Sugita-RPEiPSCell M. fascicularis cell dynamics Experiment 9 0 Stem Cell Reports9(5):1501-1515
109 109-Mandai-RPEiPSCell H. sapiens iPS derived retinal pigment epithelial cell sheet Experiment 15 0 N Engl J Med376(11):1038-1046
110 110-Makino-MembraneDyn H. sapiens membrane nakanori distribution Experiment 10 0 FASEB J31(4):1301-1322
111 111-Kawaguchi-NPCellsDyn M. musculus cell dynamics Experiment 30 2 Nature545(7654):327-331
113 113-Kamioka-CellDyn M. musculus Cell dynamics, ERK activation by FRET Experiment 5 0 Cancer Sci108(2):226-235
114 114-Shiura-MouseEmbryoDyn M. musculus X chromosome inactivation (XCI) dynamics Experiment 179 0 Sci Rep9(1):3637
115 115-Nabeshima-DuodenumVilliCell M. musculus transgene expression Experiment 3 0 Elife7
116 116-Yamada-Glycogen Drosophila tissuel immunostaining Experiment 12 0 Development145(6)
118 118-Iraha-hESCRetina H. sapiens tissue morphology Experiment 4 0 Stem Cell Reports10(3):1059-1074
119 119-Sakashita-FishVertebrae T. snyderi, T. japonicus, T. orientalis, S. japonica, L. setigerus, H. dubius, A. hanedai, M. sagifue, L. litulon, T. tonggol, S. japonicus, S. pinguis, S. oblongus, P. altivelis altivelis, T. pardalis, S. melanostictus, M. uradoi, C. spinosus, R. prometheoides, P. major, Z. faber, M. cinereus, C. saira, H. typus, C. abei, Z. nebulosa, S. zonatus, S. forsteni, K. punctatus, P. olivaceus, H. hilgendorfii, T. stictonotus vertebral bodies of teleost fish Experiment 141 0 J Morphol280(6):778-795
121 121-Inoue-SingleCellDyn Mus musculus single cell dynamics Experiment 29 0 Cell Struct Funct43(2):153-169
123 123-Yalikun-ZygoteDyn M. musculus zygote rotation Experiment 2 0 Micro & Nano Letters, 2018, 13, (3), p. 306-311
124 124-Ueda-miPSRetina M. musculus retina differentiation Experiment 31 0 Biochem Biophys Res Commun495(4):2595-2601
125 125-Gessesse-CX3CR1nanodisc protein analysis Experiment 1 0 Life (Basel)8(4)
132 132-Goto-CellMor M. musculus Electron micrographs Experiment 12 0 Elife7
134 134-Tanaka-SalivaryglandDev Mus musculus organogenesis Experiment 55 0 Nat Commun9(1):4216
135 135-Maruyama-LymVesselImmuno M. musculus Immunostaining Experiment 17 0 Dev Biol452(2):134-143
136 136-Matsumiya-ESCellDyn M. musculus Hes7 expression dynamics Experiment 9 0 Development145(4)
141 141-Sato-CellMorphology M. musculus synapse morphology Experiment 17 0 Microscopy (Oxf)68(2):122-132
142 142-Wen-CellShape Drosophila ventral furrow formation, mesodermal cell migration Experiment 4 4 Biophys J112(12):2683-2695
150 150-Abe-SomiteDev Oryzias somite development NA 18 0 Cell Rep27(3):928-939.e4

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