SSBD:database

# Project Release Updated Organism(s) Datatype BasedOn # of image datasets # of qunatitative datasets Paper
140 140-Hirata-MouseBrainSlice 2022-04-15 Mus musculus nervous system development Experiment 84 0 Cell Reports Methods 1(3), 100012
131 131-Wen-NeuronalNucDyn 2022-03-31 Caenorhabditis elegans nucleus localization Experiment 6 1 Elife10
138 138-Ito-SPBDyn 2022-03-31 Schizosaccharomyces pombe oscillatory muscle contraction Experiment 5 0 Biochem Biophys Res Commun511(4):820-825
164 164-Ono-NeuPMCA 2022-03-31 Mus musculus synaptic vesicle recycling Experiment 2 0 Sci Rep9(1):4289
170 170-Tsutsui-HookBM 2022-03-31 Mus musculus basement membrane Experiment 1 0 Nat Commun12(1):2577
172 172-Yoshida-ERKTracheaDev 2022-03-31 Mus musculus MAP kinase activity Experiment 2 0 Front Cell Dev Biol8:585640
177 177-Kinjo-cAMPsignalingDyn 2022-03-31 Canis lupus familiaris, Mus musculus, Homo sapiens cAMP-mediated signaling Experiment 112 0 ACS Chem Biol15(11):2848-2853
178 178-konagaya-CellMigration 2022-03-31 Mus musculus extracellular signal-regulated kinase activity Experiment 160 0 Cell Cycle19(22):3167-3181
179 179-Kobachi-BLVRAactivity 2022-03-31 Mus musculus, Homo sapiens biliverdin reductase Experiment 89 0 Cell Struct Funct45(2):131-141
180 180-Watabe-Biosensoractivity 2022-03-31 Canis lupus familiaris, Mus musculus, Homo sapiens extracellular signal-regulated kinase activity Experiment 115 0 ACS Sens5(3):719-730
183 183-Iwasaki-SpineDyn 2022-03-31 Mus musculus dendritic spine development, synapse organization Experiment 34 0 Eur J Neurosci51(3):806-821
184 184-Tanaka-SpineDyn 2022-03-31 Mus musculus dendritic spine Experiment 11 0 Microscopy (Oxf)69(1):44-52
185 185-Hoshino-MyotubeCa2Signal 2022-03-31 Mus musculus myotube differentiation, calcium signaling Experiment 10 0 iScience23(10):101558
188 188-Ipponjima-NHEKsCornification 2022-03-31 Homo sapiens mitochondrial depolarization, keratinocyte activation Experiment 21 0 Sci Rep10(1):5515
189 189-Kobayashi-NSCsDyn 2022-03-31 Mus musculus cell division, negative regulation of lysosomal protein catabolic process Experiment 17 0 Nat Commun10(1):5446
190 190-Iguchi-SpineDyn 2022-03-31 Mus musculus response to social isolation Experiment 4 0 Neurosci Res154:27-34
192 192-Hiroshima-SingleMolDyn 2022-03-31 Cricetulus griseus epidermal growth factor receptor binding Experiment 60 0 Microscopy (Oxf)69(2):69-78
194 194-Obashi-SpineDyn 2022-03-31 Mus musculus signaling molecule, NA Experiment 21 0 Cell Rep27(5):1503-1515.e8
196 196-Sueda-GeneExpReg 2022-03-31 Mus musculus regulation of gene expression, gene expression Experiment 24 0 Genes Dev33(9-10):511-523
202 202-Miyagawa-ChemotaxisDyn 2022-03-31 Dictyostelium discoideum chemotaxis Experiment 4 0 Nat Commun9(1):4635
203 203-Tanabe-SingleDyn 2022-03-31 Dictyostelium discoideum cAMP binding Experiment 11 0 J Cell Sci131(23)
205 205-Shen-CellPatterning 2022-03-31 Mus musculus - Experiment 5 0 PLoS One15(5):e0232518
206 206-Miyamoto-CiliaryMorphology 2022-03-31 Homo sapiens peroxisome, ciliary pocket membrane Experiment 1 0 EMBO J39(12):e103499
207 207-Kuroda-FinMorphology 2022-03-31 Danio rerio basement membrane Experiment 1 0 Front Cell Dev Biol8:580520
211 211-Hiroshima-EGFRTracking 2022-03-31 Cricetulus griseus epidermal growth factor receptor binding, epidermal growth factor-activated receptor activity Experiment 12 0 J Mol Biol430(9):1386-1401
212 212-Kajikawa-GeckoEmbryos 2022-03-31 Gekko left/right axis specification Experiment 3 0 Nat Ecol Evol4(2):261-269
213 213-Yoshida-SpindleDyn 2022-03-31 Mus musculus meiosis I nuclear membrane disassembly Experiment 16 0 Nat Commun11(1):2652
217 217-Sakai-iRFPactivity 2022-03-31 Saccharomyces cerevisiae, Schizosaccharomyces pombe biliverdin reductase (NAD(P)+) activity Experiment 8 0 J Cell Sci134(24)
72 72-Kyogoku-CytoplasmNucDyn 2021-11-30 Mus musculus mitotic cell cycle, cytoplasm organization, nuclear envelope breakdown Experiment 453 0 Dev Cell41(3):287-298.e4
70 70-Yoshida-KTMTDyn 2021-09-30 Mus musculus mitotic cell cycle Experiment 265 0 Dev Cell33(5):589-602
120 120-Ding-CentromericDyn 2021-09-30 M. musculus centromeric sister chromatid cohesion, meiotic cell cycle Experiment 351 0 Curr Biol28(10):1661-1669.e4
126 126-Imanishi-CellMorNuCyM 2021-09-30 Mus musculus plasma membrane Experiment 46 0 Cell Struct Funct43(2):129-140
127 127-Konishi-ERKDyn 2021-09-30 Mus musculus cell motility, activation of MAPERK kinase Experiment 143 0 iScience10:98-113
128 128-Muta-IECsERKDyn 2021-09-30 Mus musculus activation of MAPERK kinase, epidermal growth factor signaling pathway, ERBB2-EGFR signaling pathway, ERBB2 signaling pathway Experiment 470 0 Nat Commun9(1):2174
129 129-Komatsu-ERKBiosensorActivity 2021-09-30 Mus musculus activation of MAPERK kinase Experiment 13 0 Sci Rep8(1):8984
130 130-Sano-CellMigrationDyn 2021-09-30 Mus musculus activation of MAPERK kinase, cell migration Experiment 26 0 Am J Pathol188(11):2564-2573
161 161-Tanaka-MEFMitochondrial 2021-09-30 Mus musculus gene expression Experiment 4 0 J Cell Sci132(11)
165 165-Kinjo-ERKactivity 2021-09-30 Canis lupus familiaris, Mus musculus extracellular signal-regulated kinase activity Experiment 20 0 Nat Methods16(10):1029-1036
166 166-Takubo-ECsTrajectory 2021-09-30 Mus musculus endothelial cell morphogenesis Experiment 5 4 Sci Rep9(1):9304
171 171-Ochi-Hes1DynNPCs 2021-09-30 Mus musculus translation activator activity Experiment 3 0 Development147(4)
134 134-Tanaka-SalivaryglandDev 2020-12-23 Mus musculus organogenesis Experiment 55 0 Nat Commun9(1):4216
142 142-Wen-CellShape 2020-12-23 Drosophila ventral furrow formation, mesodermal cell migration Experiment 4 4 Biophys J112(12):2683-2695
150 150-Abe-SomiteDev 2020-12-23 Oryzias somite development Experiment 18 0 Cell Rep27(3):928-939.e4
42 42-Hayashi-NeuronalCellDyn 2019-11-20 Rattus novegicus neuron cell dynamics Experiment 0 198 Mol Biol Cell29(25):3017-3025
66 66-Iwata-CellDynOSNMT 2019-11-20 M. musculus calcium imaging data Experiment 2403 0 Neuron96(5):1139-1152.e7
68 68-Sakaguchi-NeuronFluo 2019-11-20 M. musculus neuronal morphology Experiment 67 0 Elife7
86 86-Higashi-SynapseDyn 2019-11-20 Mus musculus synapse dynamics Experiment 16 0 Cell Rep22(4):919-929
94 94-Matsuda-Beetlehorn 2019-11-20 Trypoxylus dichotomus horn primordia dynamic Experiment 5 0 Sci Rep7(1):13939
98 98-Morita-ToothEpiCellDyn 2019-11-20 M. musculus tooth epithelium deformation Experiment 5 1 PLoS One11(9):e0161336
99 99-Takagi-HairRegiPSCell 2019-11-20 M. musculus hair regeneration Experiment 6 0 Sci Adv2(4):e1500887
100 100-Yamamoto-ToothDev 2019-11-20 M. musculus tooth dynamics Experiment 7 0 Sci Rep5:18393
101 101-Oshima-ToothBioImplant 2019-11-20 M. musculus tissue structure Experiment 8 0 Sci Rep4:6044
102 102-Ogawa-SalivaryGlandDev 2019-11-20 M. musculus generation of salivary gland Experiment 6 0 Nat Commun4:2498
103 103-Hirayama-GlandReg 2019-11-20 M. musculus gland regeneration Experiment 24 0 Nat Commun4:2497
104 104-Bin-SkinImmuno 2019-11-20 M. musculus immnocytochemistry of skin Experiment 5 0 Proc Natl Acad Sci U S A114(46):12243-12248
105 105-Ono-ToothDev 2019-11-20 Canis lupus familiaris tooth development Experiment 9 0 Sci Rep7:44522
108 108-Sugita-RPEiPSCell 2019-11-20 M. fascicularis cell dynamics Experiment 9 0 Stem Cell Reports9(5):1501-1515
109 109-Mandai-RPEiPSCell 2019-11-20 H. sapiens iPS derived retinal pigment epithelial cell sheet Experiment 15 0 N Engl J Med376(11):1038-1046
111 111-Kawaguchi-NPCellsDyn 2019-11-20 M. musculus cell dynamics Experiment 30 2 Nature545(7654):327-331
113 113-Kamioka-CellDyn 2019-11-20 M. musculus Cell dynamics, ERK activation by FRET Experiment 5 0 Cancer Sci108(2):226-235
114 114-Shiura-MouseEmbryoDyn 2019-11-20 M. musculus X chromosome inactivation (XCI) dynamics Experiment 179 0 Sci Rep9(1):3637
115 115-Nabeshima-DuodenumVilliCell 2019-11-20 M. musculus transgene expression Experiment 3 0 Elife7
116 116-Yamada-Glycogen 2019-11-20 Drosophila tissuel immunostaining Experiment 12 0 Development145(6)
118 118-Iraha-hESCRetina 2019-11-20 H. sapiens tissue morphology Experiment 4 0 Stem Cell Reports10(3):1059-1074
119 119-Sakashita-FishVertebrae 2019-11-20 S. pinguis, S. forsteni, M. uradoi, C. saira, R. prometheoides, T. snyderi, M. sagifue, T. pardalis, C. spinosus, A. hanedai, H. hilgendorfii, H. dubius, K. punctatus, S. japonica, L. setigerus, L. litulon, T. stictonotus, P. major, M. cinereus, S. melanostictus, Z. faber, S. zonatus, C. abei, T. orientalis, T. tonggol, Z. nebulosa, H. typus, S. oblongus, P. altivelis altivelis, T. japonicus, P. olivaceus, S. japonicus vertebral bodies of teleost fish Experiment 141 0 J Morphol280(6):778-795
121 121-Inoue-SingleCellDyn 2019-11-20 Mus musculus single cell dynamics Experiment 29 0 Cell Struct Funct43(2):153-169
123 123-Yalikun-ZygoteDyn 2019-11-20 M. musculus zygote rotation Experiment 2 0 Micro & Nano Letters, 2018, 13, (3), p. 306-311
124 124-Ueda-miPSRetina 2019-11-20 M. musculus retina differentiation Experiment 31 0 Biochem Biophys Res Commun495(4):2595-2601
125 125-Gessesse-CX3CR1nanodisc 2019-11-20 - protein analysis Experiment 1 0 Life (Basel)8(4)
132 132-Goto-CellMor 2019-11-20 M. musculus Electron micrographs Experiment 12 0 Elife7
135 135-Maruyama-LymVesselImmuno 2019-11-20 M. musculus Immunostaining Experiment 17 0 Dev Biol452(2):134-143
136 136-Matsumiya-ESCellDyn 2019-11-20 M. musculus Hes7 expression dynamics Experiment 9 0 Development145(4)
141 141-Sato-CellMorphology 2019-11-20 M. musculus synapse morphology Experiment 17 0 Microscopy (Oxf)68(2):122-132
73 73-Fujii-NeuronalMolDynCa2 2018-11-15 - molecular dynamics Simulation 0 100 Biophys J112(4):813-826
76 76-Tanaka-MuscleDyn 2018-11-15 M. sieboldi Muscle dynamics Experiment 0 2 Sensors and Actuators B: Chemical, Volume 242, 2017, Pages 1186-1192.
47 47-Noguchi-CellDyn 2018-11-14 M. musculus cell dynamics Experiment 38 0 Cell Rep13(12):2679-86
55 55-Maekawa-ESCellDyn 2018-11-14 M. musculus tissue structure Experiment 2 0 Curr Eye Res41(4):558-68
57 57-Herawati-CellDyn 2018-11-14 2020-02-03 M. musculus epithelial cells dynamics Experiment 23 1 J Cell Biol214(5):571-86
59 59-Yano-MicrotubuleImmuno 2018-11-14 M. musculus Microtubule immunofluorescence Experiment 1 0 J Cell Biol203(4):605-14
74 74-Bansod-NSCellHes5 2018-11-14 M. musculus cell dynamics Experiment 64 0 Development144(17):3156-3167
75 75-Minegishi-NodeCell 2018-11-14 M. musculus cell tissue Experiment 4 0 Dev Cell40(5):439-452.e4
77 77-Aoki-CellDynERK 2018-11-14 M. musculus cell dynamics Experiment 14 2 Dev Cell43(3):305-317.e5
78 78-Takagi-CellDyn 2018-11-14 H. sapiens cell dynamics Experiment 8 0 Clin Ophthalmol11:1219-1225
79 79-Inomata-HeLaCell 2018-11-14 H. sapiens intracellular structure Experiment 8 0 Chem Commun (Camb)53(81):11245-11248
81 81-Yasugi-DmeCellDyn 2018-11-14 D. melanogaster LysoTracker-positive vesicle, nucleus Experiment 4 0 Sci Rep7(1):1619
82 82-Ikeda-GeneExp 2018-11-14 M. musculus gene expression Experiment 9 0 Nat Commun9(1):1387
83 83-Fumoto-LungDevWnt 2018-11-14 M. musculus organ formation Experiment 18 0 Development144(1):151-162
84 84-Ito-CellDyn 2018-11-14 H. sapiens cell dynamics Experiment 7 0 Nat Commun8(1):1834
85 85-Kosodo-NeuralballDyn 2018-11-14 M. musculus Dynamics of neural ball shape and neural differentiation Experiment 3 0 Biochem Biophys Res Commun483(1):94-100
87 87-CorneliaKoeverle-SpineDyn 2018-11-14 M. musculus spine dynamics Experiment 30 2 Sci Rep7(1):13409
89 89-Isshiki-SpineDyn 2018-11-14 M. musculus spine dynamics Experiment 40 0 Nat Commun5:4742
90 90-Ishiwata-SpindleDyn 2018-11-14 X. laevis, H. sapiens spindle dynamics Experiment 3 0
91 91-Konagaya-AMPKactivity 2018-11-14 M. musculus, H. sapiens Cell dynamic Experiment 6 0 Cell Rep21(9):2628-2638
92 92-Uda-CellsigDyn 2018-11-14 H. sapiens cell signaling dynamics Experiment 21 0 Proc Natl Acad Sci U S A114(45):11962-11967
95 95-Nojima-CellMorphology 2018-11-14 M. musculus, H. sapiens cell morphology Experiment 114 0 Sci Rep7(1):9269
96 96-Kamimura-ChemotaxisDyn 2018-11-14 D. discoideum AX2 dynamic of eukaryotic chemotaxis Experiment 5 0 Proc Natl Acad Sci U S A113(16):4356-61
106 106-Jin-BreastTumorFlu 2018-11-14 M. musculus breast tumor fluorescence Experiment 8 0 Med. Chem. Commun., 2016, 7, 623-631
107 107-Tsuboi-BreastTumorFlu 2018-11-14 M. musculus breast tumor fluorescence Experiment 13 0 Chem Commun (Camb)53(68):9450-9453
110 110-Makino-MembraneDyn 2018-11-14 H. sapiens membrane nakanori distribution Experiment 10 0 FASEB J31(4):1301-1322
21 21-Yasui-MolDynPTEN 2017-10-03 2018-11-15 D. discoideum single molecule dynamics Experiment 13 0 PLoS Comput Biol10(9):e1003817
22 22-Kondo-CellDyn 2017-10-03 2018-11-15 D. melanogaster cell dynamics Experiment 16 0 Nature494(7435):125-9
23 23-Shirai-ESCellTissue 2017-10-03 2018-11-15 H. sapiens tissue structure Experiment 2 0 Proc Natl Acad Sci U S A113(1):E81-90
24 24-Kanemura-iPSCellDyn 2017-10-03 2018-11-15 H. sapiens cell dynamics Experiment 4 0 Sci Rep3:2334
25 25-Ke-SeeDB 2017-10-03 2017-11-15 M. musculus neuron structure Experiment 52 0 Nat Neurosci16(8):1154-61
26 26-Kinoshita-iPSCellDyn 2017-10-03 2018-11-15 M. musculus cell dynamics Experiment 2 0 Invest Ophthalmol Vis Sci57(1):153-61
27 27-Iwasaki-iPSCellDyn 2017-10-03 2018-11-15 M. musculus cell/tissue structure Experiment 13 0 PLoS One11(7):e0158282
28 28-Assawachananont-iPSCellTissue 2017-10-03 2018-11-15 M. musculus tissue structure Experiment 8 0 Stem Cell Reports2(5):662-74
29 29-Ke-SeeDB2 2017-10-03 2018-11-15 M. musculus, D. melanogaster, H. sapiens neuron structure Experiment 58 0 Cell Rep14(11):2718-32
30 30-Inomata-CellDyn 2017-10-03 2018-11-15 X. laevis cell dynamics Experiment 5 0 Cell153(6):1296-311
31 31-Matsuda-SigDyn 2017-10-03 2018-11-15 C. l. familiaris, C. griseus cell dynamics Experiment 3 0 Sci Signal5(220):ra31
32 32-Matsuda-SigDyn 2017-10-03 2018-11-15 C. griseus cell dynamics Experiment 2 0 Nat Commun6:6195
33 33-Yamao-MolDynRho 2017-10-03 2018-11-15 H. sapiens cell dynamics Experiment 19 0 Sci Rep5:17527
34 34-Hayashi-CellDynSDSRM 2017-10-03 2018-11-15 C. l. familiaris organelle dynamics Experiment 3 0 Mol Biol Cell26(9):1743-51
35 35-Yonemura-CellDyn 2017-10-03 2018-11-15 M. musculus, C. l. familiaris, H. sapiens cell dynamics Experiment 3 0 PLoS One9(11):e112922
36 36-Torisawa-MolDynEg5 2017-10-03 2018-11-15 - microtubule dynamics Experiment 3 0 Biophys J111(2):373-385
37 37-Arata-MolDynPar2 2017-10-03 2020-02-03 C. elegans single molecule dynamics Experiment 3 3 Cell Rep16(8):2156-2168
38 38-Inoue-ShellStruct 2017-10-03 2017-11-15 D. cf. damesi (NA) strucure Experiment 7 0 Sci Rep6:33689
39 39-Shibata-MolDynPTEN 2017-10-03 2018-11-15 D. discoideum cell dynamics Experiment 2 2 J Cell Sci125(Pt 21):5138-50
40 40-Sakakibara-KTDyn 2017-10-03 2018-11-15 M. musculus kinetochore dynamics Experiment 3 1 Nat Commun6:7550
41 41-Hirata-XChrHiC 2017-10-03 2018-11-15 M. musculus chromosome structure Experiment 0 11 Sci Rep6:34982
43 43-Takai-SubcellStructONL 2017-10-03 2018-11-15 C. l. familiaris peroxisomes dynamics, lysosomes dynamics Experiment 2 2 Proc Natl Acad Sci U S A112(14):4352-6
44 44-Hihara-NucleosomeDyn 2017-10-03 2018-11-15 - single molecule dynamics Simulation 0 3 Cell Rep2(6):1645-56
48 48-Susaki-MouseBrainCUBIC 2017-10-03 2018-11-15 M. musculus organ structure Experiment 27 0 Cell157(3):726-39
49 49-Susaki-MouseBrainCUBIC 2017-10-03 2018-11-15 M. musculus organ structure Experiment 1 0 Nat Protoc10(11):1709-27
50 50-Tainaka-MouseBodyCUBIC 2017-10-03 2018-11-15 M. musculus organ structure Experiment 40 0 Cell159(4):911-24
52 52-Suzuki-FrogTailDyn 2017-10-03 X. laevis cell dynamics Experiment 1 0 Genes Cells21(4):358-69
53 53-Ichimura-CellDyn 2017-10-03 M. musculus cell dynamics Experiment 4 0 Sci Rep6:37562
20 20-Azuma-WormMembrane 2017-03-01 2017-11-15 C. elegans cellular dynamics Experiment 1 1 BMC Bioinformatics18(1):307
12 12-Takayama-Oocyte 2016-10-03 2020-02-03 C. elegans oocyte shape dynamics Experiment 119 119 Cell Rep15(3):625-637
14 14-Ochiai-MolDynMS2 2016-10-03 2018-11-15 M. musculus gene expression dynamics Experiment 1 0 Nucleic Acids Res43(19):e127
16 16-Tanaka-FluidDyn 2016-10-03 2018-11-15 M. musculus fluid dynamics, cell dynamics Experiment 4 2 Sensors and Actuators B: Chemical,Volume 210,2015,Pages 267-272,ISSN 0925-4005,
17 17-Aoki-MolDyn 2016-10-03 2018-11-15 R. norvegicus cell dynamics Experiment 2 0 Mol Cell52(4):529-40
18 18-Kunida-MolDynRho 2016-10-03 2018-11-15 H. sapiens cell dynamics Experiment 2 0 J Cell Sci125(Pt 10):2381-92
19 19-Tanaka-FluidDyn 2016-10-03 2018-11-15 - fluid dynamics Experiment 1 0 Micromachines 5, 289–299.
11 11-Toyoshima-NeuAct 2016-05-20 2018-11-15 C. elegans neuronal nuclear dynamics Experiment 14 14 PLoS Comput Biol12(6):e1004970
13 13-Watabe-MolDyn 2016-01-18 2018-11-15 D. discoideum, R. norvegicus single molecule dynamics Experiment, Simulation 2 4 PLoS One10(7):e0130089
15 15-Harima-GeneExp 2016-01-18 2018-11-15 M. musculus gene expression data Experiment 2 2 Cell Rep3(1):1-7
10 10-Komatsuzaki-MolDyn 2015-10-03 2018-11-15 D. discoideum single molecule dynamics Experiment 1 1 Small11(12):1396-401
7 7-Cronin-WormLocomotion 2014-10-03 2018-11-15 C. elegans behavior Experiment 0 11 BMC Genet6:5
8 8-Bashar-MouseEmbryo 2014-10-03 2018-11-15 M. musculus nuclear positions Experiment 1 1 PLoS One7(5):e35550
9 9-Masumoto-Transcriptome 2014-10-03 2017-10-03 M. musculus gene expression data Experiment 0 8 Curr Biol20(24):2199-206
1 1-Bao-WormEmbryo 2013-10-03 2018-11-15 C. elegans nuclear division dynamics Experiment 0 1 Proc Natl Acad Sci U S A103(8):2707-12
4 4-Keller-FlyEmbryo 2013-10-03 2019-04-24 D. melanogaster nuclear positions Experiment 0 2 Nat Methods7(8):637-42
5 5-Keller-FishEmbryo 2013-10-03 2018-11-15 D. rerio nuclear positions Experiment 0 7 Science322(5904):1065-9
2 2-Kyoda-WormEmbryoRNAi 2013-09-02 2020-02-03 C. elegans nuclear division dynamics Experiment 187 186 Nucleic Acids Res41(Database issue):D732-7
6 6-Arjunan-MolDyn 2013-09-02 2018-11-15 E. coli single molecule dynamics Simulation 0 1 Syst Synth Biol4(1):35-53

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