SSBD:database

# Project Release Updated Organism(s) Datatype BasedOn # of image datasets # of qunatitative datasets Paper
134 134-Tanaka-SalivaryglandDev 2020-12-23 Mus musculus organogenesis Experiment 55 0 Nat Commun9(1):4216
142 142-Wen-CellShape 2020-12-23 Drosophila ventral furrow formation, mesodermal cell migration Experiment 4 4 Biophys J112(12):2683-2695
150 150-Abe-SomiteDev 2020-12-23 Oryzias somite development NA 18 0 Cell Rep27(3):928-939.e4
42 42-Hayashi-NeuronalCellDyn 2019-11-20 Rattus novegicus neuron cell dynamics Experiment 0 198 Mol Biol Cell29(25):3017-3025
66 66-Iwata-CellDynOSNMT 2019-11-20 M. musculus calcium imaging data Experiment 2403 0 Neuron96(5):1139-1152.e7
68 68-Sakaguchi-NeuronFluo 2019-11-20 M. musculus neuronal morphology Experiment 67 0 Elife7
86 86-Higashi-SynapseDyn 2019-11-20 Mus musculus synapse dynamics Experiment 16 0 Cell Rep22(4):919-929
94 94-Matsuda-Beetlehorn 2019-11-20 Trypoxylus dichotomus horn primordia dynamic Experiment 5 0 Sci Rep7(1):13939
98 98-Morita-ToothEpiCellDyn 2019-11-20 M. muculus tooth epithelium deformation Experiment 5 1 PLoS One11(9):e0161336
99 99-Takagi-HairRegiPSCell 2019-11-20 M. musculus hair regeneration Experiment 6 0 Sci Adv2(4):e1500887
100 100-Yamamoto-ToothDev 2019-11-20 M. muculus tooth dynamics Experiment 7 0 Sci Rep5:18393
101 101-Oshima-ToothBioImplant 2019-11-20 M. musculus tissue structure Experiment 8 0 Sci Rep4:6044
102 102-Ogawa-SalivaryGlandDev 2019-11-20 M. musculus generation of salivary gland Experiment 6 0 Nat Commun4:2498
103 103-Hirayama-GlandReg 2019-11-20 M. musculus gland regeneration Experiment 24 0 Nat Commun4:2497
104 104-Bin-SkinImmuno 2019-11-20 M. musculus immnocytochemistry of skin Experiment 5 0 Proc Natl Acad Sci U S A114(46):12243-12248
105 105-Ono-ToothDev 2019-11-20 Canis lupus familiaris tooth development Experiment 9 0 Sci Rep7:44522
108 108-Sugita-RPEiPSCell 2019-11-20 M. fascicularis cell dynamics Experiment 9 0 Stem Cell Reports9(5):1501-1515
109 109-Mandai-RPEiPSCell 2019-11-20 H. sapiens iPS derived retinal pigment epithelial cell sheet Experiment 15 0 N Engl J Med376(11):1038-1046
111 111-Kawaguchi-NPCellsDyn 2019-11-20 M. musculus cell dynamics Experiment 30 2 Nature545(7654):327-331
113 113-Kamioka-CellDyn 2019-11-20 M. musculus Cell dynamics, ERK activation by FRET Experiment 5 0 Cancer Sci108(2):226-235
114 114-Shiura-MouseEmbryoDyn 2019-11-20 M. musculus X chromosome inactivation (XCI) dynamics Experiment 179 0 Sci Rep9(1):3637
115 115-Nabeshima-DuodenumVilliCell 2019-11-20 M. musculus transgene expression Experiment 3 0 Elife7
116 116-Yamada-Glycogen 2019-11-20 Drosophila tissuel immunostaining Experiment 12 0 Development145(6)
118 118-Iraha-hESCRetina 2019-11-20 H. sapiens tissue morphology Experiment 4 0 Stem Cell Reports10(3):1059-1074
119 119-Sakashita-FishVertebrae 2019-11-20 T. snyderi, T. japonicus, T. orientalis, S. japonica, L. setigerus, H. dubius, A. hanedai, M. sagifue, L. litulon, T. tonggol, S. japonicus, S. pinguis, S. oblongus, P. altivelis altivelis, T. pardalis, S. melanostictus, M. uradoi, C. spinosus, R. prometheoides, P. major, Z. faber, M. cinereus, C. saira, H. typus, C. abei, Z. nebulosa, S. zonatus, S. forsteni, K. punctatus, P. olivaceus, H. hilgendorfii, T. stictonotus vertebral bodies of teleost fish Experiment 141 0 J Morphol280(6):778-795
121 121-Inoue-SingleCellDyn 2019-11-20 Mus musculus single cell dynamics Experiment 29 0 Cell Struct Funct43(2):153-169
123 123-Yalikun-ZygoteDyn 2019-11-20 M. musculus zygote rotation Experiment 2 0 Micro & Nano Letters, 2018, 13, (3), p. 306-311
124 124-Ueda-miPSRetina 2019-11-20 M. musculus retina differentiation Experiment 31 0 Biochem Biophys Res Commun495(4):2595-2601
125 125-Gessesse-CX3CR1nanodisc 2019-11-20 protein analysis Experiment 1 0 Life (Basel)8(4)
132 132-Goto-CellMor 2019-11-20 M. musculus Electron micrographs Experiment 12 0 Elife7
135 135-Maruyama-LymVesselImmuno 2019-11-20 M. musculus Immunostaining Experiment 17 0 Dev Biol452(2):134-143
136 136-Matsumiya-ESCellDyn 2019-11-20 M. musculus Hes7 expression dynamics Experiment 9 0 Development145(4)
141 141-Sato-CellMorphology 2019-11-20 M. musculus synapse morphology Experiment 17 0 Microscopy (Oxf)68(2):122-132
73 73-Fujii-NeuronalMolDynCa2 2018-11-15 molecular dynamics Simulation 0 100 Biophys J112(4):813-826
76 76-Tanaka-MuscleDyn 2018-11-15 M. sieboldi Muscle dynamics Experiment 0 2 Sensors and Actuators B: Chemical, Volume 242, 2017, Pages 1186-1192.
47 47-Noguchi-CellDyn 2018-11-14 M. musculus cell dynamics Experiment 38 0 Cell Rep13(12):2679-86
55 55-Maekawa-ESCellDyn 2018-11-14 M. musculus tissue structure Experiment 2 0 Curr Eye Res41(4):558-68
57 57-Herawati-CellDyn 2018-11-14 2020-02-03 M. musculus epithelial cells dynamics Experiment 23 1 J Cell Biol214(5):571-86
59 59-Yano-MicrotubuleImmuno 2018-11-14 M. musculus Microtubule immunofluorescence Experiment 1 0 J Cell Biol203(4):605-14
74 74-Bansod-NSCellHes5 2018-11-14 M. musculus cell dynamics Experiment 64 0 Development144(17):3156-3167
75 75-Minegishi-NodeCell 2018-11-14 M. musculus cell tissue Experiment 4 0 Dev Cell40(5):439-452.e4
77 77-Aoki-CellDynERK 2018-11-14 M. musculus cell dynamics Experiment 14 2 Dev Cell43(3):305-317.e5
78 78-Takagi-CellDyn 2018-11-14 H. sapiens cell dynamics Experiment 8 0 Clin Ophthalmol11:1219-1225
79 79-Inomata-HeLaCell 2018-11-14 H. sapiens intracellular structure Experiment 8 0 Chem Commun (Camb)53(81):11245-11248
81 81-Yasugi-DmeCellDyn 2018-11-14 D. melanogaster LysoTracker-positive vesicle, nucleus Experiment 4 0 Sci Rep7(1):1619
82 82-Ikeda-GeneExp 2018-11-14 M. musculus gene expression Experiment 9 0 Nat Commun9(1):1387
83 83-Fumoto-LungDevWnt 2018-11-14 M. musculus organ formation Experiment 18 0 Development144(1):151-162
84 84-Ito-CellDyn 2018-11-14 H. sapiens cell dynamics Experiment 7 0 Nat Commun8(1):1834
85 85-Kosodo-NeuralballDyn 2018-11-14 M. musculus Dynamics of neural ball shape and neural differentiation Experiment 3 0 Biochem Biophys Res Commun483(1):94-100
87 87-CorneliaKoeverle-SpineDyn 2018-11-14 M. musculus spine dynamics Experiment 30 2 Sci Rep7(1):13409
89 89-Isshiki-SpineDyn 2018-11-14 M. musculus spine dynamics Experiment 40 0 Nat Commun5:4742
90 90-Ishiwata-SpindleDyn 2018-11-14 X. laevis, H. sapiens spindle dynamics Experiment 3 0
91 91-Konagaya-AMPKactivity 2018-11-14 M. musculus, H. sapiens Cell dynamic Experiment 6 0 Cell Rep21(9):2628-2638
92 92-Uda-CellsigDyn 2018-11-14 H. sapiens cell signaling dynamics Experiment 21 0 Proc Natl Acad Sci U S A114(45):11962-11967
95 95-Nojima-CellMorphology 2018-11-14 M. musculus, H. sapiens cell morphology Experiment 114 0 Sci Rep7(1):9269
96 96-Kamimura-ChemotaxisDyn 2018-11-14 D. discoideum AX2 dynamic of eukaryotic chemotaxis Experiment 5 0 Proc Natl Acad Sci U S A113(16):4356-61
106 106-Jin-BreastTumorFlu 2018-11-14 M. musculus breast tumor fluorescence Experiment 8 0 Med. Chem. Commun., 2016, 7, 623-631
107 107-Tsuboi-BreastTumorFlu 2018-11-14 M. musculus breast tumor fluorescence Experiment 13 0 Chem Commun (Camb)53(68):9450-9453
110 110-Makino-MembraneDyn 2018-11-14 H. sapiens membrane nakanori distribution Experiment 10 0 FASEB J31(4):1301-1322
21 21-Yasui-MolDynPTEN 2017-10-03 2018-11-15 D. discoideum single molecule dynamics Experiment 13 0 PLoS Comput Biol10(9):e1003817
22 22-Kondo-CellDyn 2017-10-03 2018-11-15 D. melanogaster cell dynamics Experiment 16 0 Nature494(7435):125-9
23 23-Shirai-ESCellTissue 2017-10-03 2018-11-15 H. sapiens tissue structure Experiment 2 0 Proc Natl Acad Sci U S A113(1):E81-90
24 24-Kanemura-iPSCellDyn 2017-10-03 2018-11-15 H. sapiens cell dynamics Experiment 4 0 Sci Rep3:2334
25 25-Ke-SeeDB 2017-10-03 2017-11-15 M. musculus neuron structure Experiment 52 0 Nat Neurosci16(8):1154-61
26 26-Kinoshita-iPSCellDyn 2017-10-03 2018-11-15 M. musculus cell dynamics Experiment 2 0 Invest Ophthalmol Vis Sci57(1):153-61
27 27-Iwasaki-iPSCellDyn 2017-10-03 2018-11-15 M. musculus cell/tissue structure Experiment 13 0 PLoS One11(7):e0158282
28 28-Assawachananont-iPSCellTissue 2017-10-03 2018-11-15 M. musculus tissue structure Experiment 8 0 Stem Cell Reports2(5):662-74
29 29-Ke-SeeDB2 2017-10-03 2018-11-15 M. musculus, H. sapiens, D. melanogaster neuron structure Experiment 58 0 Cell Rep14(11):2718-32
30 30-Inomata-CellDyn 2017-10-03 2018-11-15 X. laevis cell dynamics Experiment 5 0 Cell153(6):1296-311
31 31-Matsuda-SigDyn 2017-10-03 2018-11-15 C. l. familiaris, C. griseus cell dynamics Experiment 3 0 Sci Signal5(220):ra31
32 32-Matsuda-SigDyn 2017-10-03 2018-11-15 C. griseus cell dynamics Experiment 2 0 Nat Commun6:6195
33 33-Yamao-MolDynRho 2017-10-03 2018-11-15 H. sapiens cell dynamics Experiment 19 0 Sci Rep5:17527
34 34-Hayashi-CellDynSDSRM 2017-10-03 2018-11-15 C. l. familiaris organelle dynamics Experiment 3 0 Mol Biol Cell26(9):1743-51
35 35-Yonemura-CellDyn 2017-10-03 2018-11-15 C. l. familiaris, M. musculus, H. sapiens cell dynamics Experiment 3 0 PLoS One9(11):e112922
36 36-Torisawa-MolDynEg5 2017-10-03 2018-11-15 microtubule dynamics Experiment 3 0 Biophys J111(2):373-385
37 37-Arata-MolDynPar2 2017-10-03 2020-02-03 C. elegans single molecule dynamics Experiment 3 3 Cell Rep16(8):2156-2168
38 38-Inoue-ShellStruct 2017-10-03 2017-11-15 D. cf. damesi (NA) strucure Experiment 7 0 Sci Rep6:33689
39 39-Shibata-MolDynPTEN 2017-10-03 2018-11-15 D. discoideum cell dynamics Experiment 2 2 J Cell Sci125(Pt 21):5138-50
40 40-Sakakibara-KTDyn 2017-10-03 2018-11-15 M. musculus kinetochore dynamics Experiment 3 1 Nat Commun6:7550
41 41-Hirata-XChrHiC 2017-10-03 2018-11-15 M. musculus chromosome structure Experiment 0 11 Sci Rep6:34982
43 43-Takai-SubcellStructONL 2017-10-03 2018-11-15 C. l. familiaris lysosomes dynamics, peroxisomes dynamics Experiment 2 2 Proc Natl Acad Sci U S A112(14):4352-6
44 44-Hihara-NucleosomeDyn 2017-10-03 2018-11-15 single molecule dynamics Simulation 0 3 Cell Rep2(6):1645-56
48 48-Susaki-MouseBrainCUBIC 2017-10-03 2018-11-15 M. musculus organ structure Experiment 27 0 Cell157(3):726-39
49 49-Susaki-MouseBrainCUBIC 2017-10-03 2018-11-15 M. musculus organ structure Experiment 1 0 Nat Protoc10(11):1709-27
50 50-Tainaka-MouseBodyCUBIC 2017-10-03 2018-11-15 M. musculus organ structure Experiment 40 0 Cell159(4):911-24
20 20-Azuma-WormMembrane 2017-03-01 2017-11-15 C. elegans cellular dynamics Experiment 1 1 BMC Bioinformatics18(1):307
12 12-Takayama-Oocyte 2016-10-03 2020-02-03 C. elegans oocyte shape dynamics Experiment 119 119 Cell Rep15(3):625-637
14 14-Ochiai-MolDynMS2 2016-10-03 2018-11-15 M. musculus gene expression dynamics Experiment 1 0 Nucleic Acids Res43(19):e127
16 16-Tanaka-FluidDyn 2016-10-03 2018-11-15 M. musculus fluid dynamics, cell dynamics Experiment 4 2 Sensors and Actuators B: Chemical,Volume 210,2015,Pages 267-272,ISSN 0925-4005,
17 17-Aoki-MolDyn 2016-10-03 2018-11-15 R. norvegicus cell dynamics Experiment 2 0 Mol Cell52(4):529-40
18 18-Kunida-MolDynRho 2016-10-03 2018-11-15 H. sapiens cell dynamics Experiment 2 0 J Cell Sci125(Pt 10):2381-92
19 19-Tanaka-FluidDyn 2016-10-03 2018-11-15 fluid dynamics Experiment 1 0 Micromachines 5, 289–299.
11 11-Toyoshima-NeuAct 2016-05-20 2018-11-15 C. elegans neuronal nuclear dynamics Experiment 14 14 PLoS Comput Biol12(6):e1004970
13 13-Watabe-MolDyn 2016-01-18 2018-11-15 D. discoideum, R. norvegicus single molecule dynamics Simulation, Experiment 2 4 PLoS One10(7):e0130089
15 15-Harima-GeneExp 2016-01-18 2018-11-15 M. musculus gene expression data Experiment 2 2 Cell Rep3(1):1-7
10 10-Komatsuzaki-MolDyn 2015-10-03 2018-11-15 D. discoideum single molecule dynamics Experiment 1 1 Small11(12):1396-401
7 7-Cronin-WormLocomotion 2014-10-03 2018-11-15 C. elegans behavior Experiment 0 11 BMC Genet6:5
8 8-Bashar-MouseEmbryo 2014-10-03 2018-11-15 M. musculus nuclear positions Experiment 1 1 PLoS One7(5):e35550
9 9-Masumoto-Transcriptome 2014-10-03 2017-10-03 M. musculus gene expression data Experiment 0 8 Curr Biol20(24):2199-206
1 1-Bao-WormEmbryo 2013-10-03 2018-11-15 C. elegans nuclear division dynamics Experiment 0 1 Proc Natl Acad Sci U S A103(8):2707-12
4 4-Keller-FlyEmbryo 2013-10-03 2019-04-24 D. melanogaster nuclear positions Experiment 0 2 Nat Methods7(8):637-42
5 5-Keller-FishEmbryo 2013-10-03 2018-11-15 D. rerio nuclear positions Experiment 0 7 Science322(5904):1065-9
2 2-Kyoda-WormEmbryoRNAi 2013-09-02 2020-02-03 C. elegans nuclear division dynamics Experiment 187 186 Nucleic Acids Res41(Database issue):D732-7
6 6-Arjunan-MolDyn 2013-09-02 2018-11-15 E. coli single molecule dynamics Simulation 0 1 Syst Synth Biol4(1):35-53
52 52-Suzuki-FrogTailDyn X. laevis cell dynamics Experiment 1 0 Genes Cells21(4):358-69
53 53-Ichimura-CellDyn M. musculus cell dynamics Experiment 4 0 Sci Rep6:37562

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