Latest release of BDML and PDPML schemas can be found here.
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and PDPML manual for more details.
bdml.xsd - Version 3.0, updated on October 03, 2017.
The main schema used to describe quantitative biological and dynamical data
omicsbdml.xsd - Version 1.0, updated on October 03, 2017.
The sub schema used to describe quantitative biological and dynamical data
pdpml.xsd - Version 1.0, update on October 03, 2017.
The PDPML schema used to describe data processing of the quantitative biological data Softwares
phenochar - a software package for extracting phenotypic characters from BDML files. Please see
phenochar manual for details.
BDML2BD5 - a software package for converting numerical data in the BDML format (ver. 0.18) into BD5 format. Please see
sample codes on Github for details.
bdml2bd5v018.zip - It supports for BDML version 0.18, and released April 18, 2018.
SSBD-OMERO.insight - a plugin of ImageJ for reading to the images stored in SSBD. Please see
SSBD-OMERO.insight manual for details.
SSBD-OMERO.insight-ij-5.0.4-ice34.zip: It supports for OMERO.web version 5.0.4, and released October 3, 2014.
SSBD-OMERO.insight-ij-5.4.4-ice36.zip: It supports for OMERO.web version 5.4.4, and released March 20, 2018.
SSBD-OMERO.insight-ij-5.4.10-ice36.zip: It supports for OMERO.web version 5.4.10, and released April 22, 2019.
Example codes using SSBD-OMERO API
OpenSSBD - the open-source version of SSBD for managing quantitative biological dynamics data. Please see
Github README page for more details.
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