Active Schemas

Latest release of BDML and PDPML schemas can be found here. Some browsers will try to render the XSD files when you click on the link below. This can result in either a blank screen or a screen of unformatted text. Please choose to either download the file or view the source.

Please see BDML manual, OmicsBDML manual, and PDPML manual for more details.

  • bdml.xsd - Version 3.0, updated on October 03, 2017. The main schema used to describe quantitative biological and dynamical data
  • omicsbdml.xsd - Version 1.0, updated on October 03, 2017. The sub schema used to describe quantitative biological and dynamical data
  • pdpml.xsd - Version 1.0, update on October 03, 2017. The PDPML schema used to describe data processing of the quantitative biological data

Softwares

  • phenochar - a software package for extracting phenotypic characters from BDML files. Please see phenochar manual for details.
  • BDML2BD5 - a software package for converting numerical data in the BDML format (ver. 0.18) into BD5 format. Please see sample codes on Github for details.
    • bdml2bd5v018.zip - It supports for BDML version 0.18, and released April 18, 2018.
  • SSBD-OMERO.insight - a plugin of ImageJ for reading to the images stored in SSBD. Please see SSBD-OMERO.insight manual for details.
    • SSBD-OMERO.insight-ij-5.0.4-ice34.zip: It supports for OMERO.web version 5.0.4, and released October 3, 2014.
    • SSBD-OMERO.insight-ij-5.4.4-ice36.zip: It supports for OMERO.web version 5.4.4, and released March 20, 2018.
    • SSBD-OMERO.insight-ij-5.4.10-ice36.zip: It supports for OMERO.web version 5.4.10, and released April 22, 2019.
  • Example codes using SSBD-OMERO API