Summary of 114-Shiura-MouseEmbryoDyn
SSBD:database
SSBD:database URL
SSBD:repository
SSBD:repository URL
Title
RNA-FISH and immunofluorescence images of Xist/Tsix expression during peri-implantation embryoic development using whole-mount 3D RNA-FISH
Description
-
Release date
2019-11-20
Updated date
-
License
CC BY
Kind
Image data
based on Experiment
Number of Datasets
179
( Image datasets: 179,
Quantitative data datasets: 0 )
Size of Datasets
14.3 GB
( Image datasets: 14.3 GB,
Quantitative data datasets: 0 bytes )
Organism(s)
Mus musculus
Gene symbol(s)
Lamp2, Pkg1, Tsix, Xist
Protein name(s)
CDX2, GATA6, NANOG, POU5F1
Datatype
X chromosome inactivation (XCI) dynamics
Molecular Function (MF)
Biological Process (BP)
dosage compensation by inactivation of X chromosome, gene expression
Cellular Component (CC)
necleus
Biological Imaging Method
-
XYZ Scale
XY: 0.2197266 micrometer/pixel, Z: 0.7 micrometer/slice, XY: 0.1757813 micrometer/pixel, Z: 0.7 micrometer/slice, XY: 0.2075665 micrometer/pixel, Z: 0.8 micrometer/slice, XY: 0.2372188 micrometer/pixel, Z: NA, XY: 0.2767553 micrometer/pixel, Z: 0.8 micrometer/slice, XY: 0.1660532 micrometer/pixel, Z: 0.8 micrometer/slice, XY: 0.1845035 micrometer/pixel, Z: 0.8 micrometer/slice, XY: 0.2372188 micrometer/pixel, Z: 0.8 micrometer/slice, XY: 0.2485922 micrometer/pixel, Z: 0.7 micrometer/slice, XY: 0.1660532 micrometer/pixel, Z: NA
T scale
-
Image Acquisition
Experiment type
Immunofluorescence
Microscope type
ConfocalMicroscope
Acquisition mode
LaserScanningConfocalMicroscopy
Contrast method
Fluorescence
Microscope model
-
Detector model
-
Objective model
-
Filter set
-
Related paper(s)
Contact
Kuniya Abe, Hirosuke Shiura
, RIKEN
, BioResource Research Center
, Technology & Development Team for Mammalian Genome Dynamics,
Contributors
Hirosuke Shiura, Kuniya Abe
Dataset List of 114-Shiura-MouseEmbryoDyn
Thumbnail
#
Dataset ID
Kind
Size
4D View
SSBD:OMERO
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Thumbnail
#
4497
Datast ID
Fig1a-g_E3.5_1
Dataset Kind
Image data
Dataset Size
44.3 MB
4D view
SSBD:OMERO
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Thumbnail
#
4498
Datast ID
Fig1a-g_E3.5_2
Dataset Kind
Image data
Dataset Size
31.4 MB
4D view
SSBD:OMERO
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Thumbnail
#
4499
Datast ID
Fig1a-g_E3.5_3
Dataset Kind
Image data
Dataset Size
39.1 MB
4D view
SSBD:OMERO
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Thumbnail
#
4500
Datast ID
Fig1a-g_E3.75_1
Dataset Kind
Image data
Dataset Size
69.0 MB
4D view
SSBD:OMERO
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Thumbnail
#
4501
Datast ID
Fig1a-g_E3.75_2
Dataset Kind
Image data
Dataset Size
67.7 MB
4D view
SSBD:OMERO
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Thumbnail
#
4502
Datast ID
Fig1a-g_E3.75_3
Dataset Kind
Image data
Dataset Size
74.2 MB
4D view
SSBD:OMERO
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Thumbnail
#
4503
Datast ID
Fig1a-g_E3.75_4
Dataset Kind
Image data
Dataset Size
79.3 MB
4D view
SSBD:OMERO
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Thumbnail
#
4504
Datast ID
Fig1a-g_E4.0_1
Dataset Kind
Image data
Dataset Size
84.5 MB
4D view
SSBD:OMERO
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Thumbnail
#
4505
Datast ID
Fig1a-g_E4.0_2
Dataset Kind
Image data
Dataset Size
81.9 MB
4D view
SSBD:OMERO
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Thumbnail
#
4506
Datast ID
Fig1a-g_E4.0_3
Dataset Kind
Image data
Dataset Size
65.1 MB
4D view
SSBD:OMERO
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Thumbnail
#
4507
Datast ID
Fig1a-g_E4.25_1
Dataset Kind
Image data
Dataset Size
58.6 MB
4D view
SSBD:OMERO
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Thumbnail
#
4508
Datast ID
Fig1a-g_E4.25_2
Dataset Kind
Image data
Dataset Size
52.1 MB
4D view
SSBD:OMERO
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Thumbnail
#
4509
Datast ID
Fig1a-g_E4.25_3
Dataset Kind
Image data
Dataset Size
13.2 MB
4D view
SSBD:OMERO
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Thumbnail
#
4510
Datast ID
Fig1a-g_E4.25_4
Dataset Kind
Image data
Dataset Size
52.1 MB
4D view
SSBD:OMERO
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Thumbnail
#
4511
Datast ID
Fig1a-g_E4.25_5
Dataset Kind
Image data
Dataset Size
58.6 MB
4D view
SSBD:OMERO
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Thumbnail
#
4512
Datast ID
Fig1a-g_E4.25_6
Dataset Kind
Image data
Dataset Size
65.1 MB
4D view
SSBD:OMERO
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Thumbnail
#
4513
Datast ID
Fig1a-g_E4.50_1
Dataset Kind
Image data
Dataset Size
44.3 MB
4D view
SSBD:OMERO
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Thumbnail
#
4514
Datast ID
Fig1a-g_E4.50_2
Dataset Kind
Image data
Dataset Size
75.5 MB
4D view
SSBD:OMERO
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Thumbnail
#
4515
Datast ID
Fig1a-g_E4.50_3
Dataset Kind
Image data
Dataset Size
65.1 MB
4D view
SSBD:OMERO
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Thumbnail
#
4516
Datast ID
Fig1a-g_E4.75_1
Dataset Kind
Image data
Dataset Size
66.4 MB
4D view
SSBD:OMERO
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Thumbnail
#
4517
Datast ID
Fig1a-g_E4.75_2
Dataset Kind
Image data
Dataset Size
74.2 MB
4D view
SSBD:OMERO
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Thumbnail
#
4518
Datast ID
Fig1a-g_E4.75_3
Dataset Kind
Image data
Dataset Size
61.2 MB
4D view
SSBD:OMERO
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Thumbnail
#
4519
Datast ID
Fig1a-g_E4.75_4
Dataset Kind
Image data
Dataset Size
80.6 MB
4D view
SSBD:OMERO
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Thumbnail
#
4520
Datast ID
Fig1a-g_E4.75_5
Dataset Kind
Image data
Dataset Size
15.8 MB
4D view
SSBD:OMERO
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Thumbnail
#
4521
Datast ID
Fig1a-g_E4.75_6
Dataset Kind
Image data
Dataset Size
72.9 MB
4D view
SSBD:OMERO
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Thumbnail
#
4522
Datast ID
Fig1a-g_E5.0_1
Dataset Kind
Image data
Dataset Size
83.2 MB
4D view
SSBD:OMERO
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Thumbnail
#
4523
Datast ID
Fig1a-g_E5.0_2
Dataset Kind
Image data
Dataset Size
43.0 MB
4D view
SSBD:OMERO
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Thumbnail
#
4524
Datast ID
Fig1a-g_E5.0_3
Dataset Kind
Image data
Dataset Size
70.3 MB
4D view
SSBD:OMERO
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Thumbnail
#
4525
Datast ID
Fig1a-g_E5.0_4
Dataset Kind
Image data
Dataset Size
83.2 MB
4D view
SSBD:OMERO
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Thumbnail
#
4526
Datast ID
Fig1a-g_E5.25_1
Dataset Kind
Image data
Dataset Size
83.2 MB
4D view
SSBD:OMERO
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Thumbnail
#
4527
Datast ID
Fig1a-g_E5.25_2
Dataset Kind
Image data
Dataset Size
84.5 MB
4D view
SSBD:OMERO
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Thumbnail
#
4528
Datast ID
Fig1a-g_E5.25_3
Dataset Kind
Image data
Dataset Size
91.0 MB
4D view
SSBD:OMERO
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Thumbnail
#
4529
Datast ID
Fig1a-g_E5.50_1
Dataset Kind
Image data
Dataset Size
105.3 MB
4D view
SSBD:OMERO
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Thumbnail
#
4530
Datast ID
Fig1a-g_E5.50_2
Dataset Kind
Image data
Dataset Size
105.3 MB
4D view
SSBD:OMERO
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Thumbnail
#
4531
Datast ID
Fig1a-g_E5.50_3
Dataset Kind
Image data
Dataset Size
105.3 MB
4D view
SSBD:OMERO
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Thumbnail
#
4532
Datast ID
Fig1a-g_E5.50_4
Dataset Kind
Image data
Dataset Size
104.0 MB
4D view
SSBD:OMERO
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Thumbnail
#
4533
Datast ID
Fig1a-g_E6.5_1
Dataset Kind
Image data
Dataset Size
155.9 MB
4D view
SSBD:OMERO
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Thumbnail
#
4534
Datast ID
Fig1a-g_E6.5_2
Dataset Kind
Image data
Dataset Size
85.8 MB
4D view
SSBD:OMERO
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Thumbnail
#
4535
Datast ID
Fig1h_E4.75
Dataset Kind
Image data
Dataset Size
74.2 MB
4D view
SSBD:OMERO
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Thumbnail
#
4536
Datast ID
Fig1i_E5.5
Dataset Kind
Image data
Dataset Size
104.0 MB
4D view
SSBD:OMERO
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Thumbnail
#
4537
Datast ID
Fig1j_Lamp2_1
Dataset Kind
Image data
Dataset Size
153.6 MB
4D view
SSBD:OMERO
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Thumbnail
#
4538
Datast ID
Fig1j_Lamp2_2
Dataset Kind
Image data
Dataset Size
174.1 MB
4D view
SSBD:OMERO
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Thumbnail
#
4539
Datast ID
Fig1j_Lamp2_3
Dataset Kind
Image data
Dataset Size
143.3 MB
4D view
SSBD:OMERO
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Thumbnail
#
4540
Datast ID
Fig1j_Pgk1_1
Dataset Kind
Image data
Dataset Size
143.4 MB
4D view
SSBD:OMERO
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Thumbnail
#
4541
Datast ID
Fig1j_Pgk1_2
Dataset Kind
Image data
Dataset Size
143.4 MB
4D view
SSBD:OMERO
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Thumbnail
#
4542
Datast ID
Fig2a_E3.75_1
Dataset Kind
Image data
Dataset Size
58.6 MB
4D view
SSBD:OMERO
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Thumbnail
#
4543
Datast ID
Fig2a_E3.75_2
Dataset Kind
Image data
Dataset Size
72.9 MB
4D view
SSBD:OMERO
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Thumbnail
#
4544
Datast ID
Fig2a_E3.75_3
Dataset Kind
Image data
Dataset Size
46.9 MB
4D view
SSBD:OMERO
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Thumbnail
#
4545
Datast ID
Fig2a_E3.75_4
Dataset Kind
Image data
Dataset Size
15.8 MB
4D view
SSBD:OMERO
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Thumbnail
#
4546
Datast ID
Fig2a_E4.0_1
Dataset Kind
Image data
Dataset Size
75.5 MB
4D view
SSBD:OMERO
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