SSBD:database

Introduction

SSBD is a platform for sharing and reusing bioimaging data. SSBD:database is an added-value database for bioimages and biological dynamics data. It provides a rich set of open resources for analyzing microscopy images and quantitative data of biological objects, such as single-molecule, cell, tissue, individual, etc., and software tools for analysis. Microscopy images and quantitative biological data are collected from a variety of species, sources, and methods. These include data obtained from both experiments and computational simulations.

SSBD:database shares 244 projects, SSBD shares totally 351 projects, 45.8 TB (2025-11-05)

Find the dataset from the search box above, or see the dataset list on the Resources.

See Citation Policies（PDF) for citation instructions.

For more information, please refer to the following paper:

Koji Kyoda, Hiroya Itoga, Yuki Yamagata, Emi Fujisawa, Fangfang Wang, Miguel Miranda-Miranda, Haruna Yamamoto, Yasue Nakano, Yukako Tohsato, Shuichi Onami,
SSBD: an ecosystem for enhanced sharing and reuse of bioimaging data,
Nucleic Acids Research , Volume 53, Issue D1, 6 January 2025, Pages D1716-D1723,
doi: 10.1093/nar/gkae860, PMID: 39479781; PMCID: PMC11701685.

Share your data

SSBD:database shares selected, highly reusable bioimaging data and biodynamics data. Our curators will invite to share the data from SSBD:repository and accepted papers. Share youre data on SSBD:repository first, or send e-mail to us.

Samples

Microscopy Images

Calcium response and shape changes in oocyte of C. elegans

DIC image of nuclear division dynamics in C. elegans embryo

TEM image of retinal tissue from human embryonic stem cells

Quantitative Data

Nuclear division dynamics in D. rerio wild-type embryo

Nuclear division dynamics in C. elegans wild-type embryo

Single molecule dynamics in E. coli wild-type

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Funding