Summary of ssbd-repos-000115

SSBD:database
URL

Name
ssbd-repos-000115 (115-Nabeshima-DuodenumVilliCell)
URL
DOI
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Title
Lineage trace images of LacZ cells in intestinal villi of the duodenum at different days
Description
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Submited Date
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Release Date
2019-11-20
Updated Date
-
License
Funding information
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File formats
Data size
680.0 KB

Organism
M. musculus
Strain
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Cell Line
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Genes
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Proteins
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GO Molecular Function (MF)
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GO Biological Process (BP)
DNA methylation, embryogenesis
GO Cellular Component (CC)
NA
Study Type
-
Imaging Methods
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Method Summary
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Related paper(s)

Ryo Nabeshima, Osamu Nishimura, Takako Maeda, Natsumi Shimizu, Takahiro Ide, Kenta Yashiro, Yasuo Sakai, Chikara Meno, Mitsutaka Kadota, Hidetaka Shiratori, Shigehiro Kuraku, Hiroshi Hamada (2018) Loss of Fam60a, a Sin3a subunit, results in embryonic lethality and is associated with aberrant methylation at a subset of gene promoters., eLife, Volume 7

Published in 2018 Aug 2 (Electronic publication in Aug. 2, 2018, midnight )

(Abstract) We have examined the role of Fam60a, a gene highly expressed in embryonic stem cells, in mouse development. Fam60a interacts with components of the Sin3a-Hdac transcriptional corepressor complex, and most Fam60a(-/-) embryos manifest hypoplasia of visceral organs and die in utero. Fam60a is recruited to the promoter regions of a subset of genes, with the expression of these genes being either up- or down-regulated in Fam60a(-/-) embryos. The DNA methylation level of the Fam60a target gene Adhfe1 is maintained at embryonic day (E) 7.5 but markedly reduced at E9.5 in Fam60a(-/-) embryos, suggesting that DNA demethylation is enhanced in the mutant. Examination of genome-wide DNA methylation identified several differentially methylated regions, which were preferentially hypomethylated, in Fam60a(-/-) embryos. Our data suggest that Fam60a is required for proper embryogenesis, at least in part as a result of its regulation of DNA methylation at specific gene promoters.
(MeSH Terms)

Contact(s)
Hiroshi Hamada
Organization(s)
RIKEN , RIKEN Center for Biosystems Dynamics Research , Laboratory for Organismal Patterning
Image Data Contributors
Quantitative Data Contributors

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