Summary of 191-Shima-KIF5Cmove

SSBD:database
SSBD:database URL
Title
KIF5C running on various states of microtubules
Description
-
Relase date
2024-12-14
Updated date
-
License
CC BY
Kind
Image data based on Experiment
Number of Datasets
6 ( Image datasets: 6, Quantitative data datasets: 0 )
Size of Datasets
1.6 GB ( Image datasets: 1.6 GB, Quantitative data datasets: 0 bytes )

Organism(s)

Datatype
-
Molecular Function (MF)
microtubule motor activity
Biological Process (BP)
microtubule depolymerization, microtubule bundle maintenance, microtubule-based transport
Cellular Component (CC)
Biological Imaging Method
evanescent wave microscopy, time lapse microscopy
X scale
0.017 nanometer^{-1}/pixel, 60 nanometer/pixel
Y scale
0.017 nanometer^{-1}/pixel, 60 nanometer/pixel
Z scale
-
T scale
0.1 seconds per time interval, 2 seconds per time interval, 5 seconds per time interval, 15 seconds per time interval

Image Acquisition
Experiment type
-
Microscope type
-
Acquisition mode
-
Contrast method
-
Microscope model
-
Detector model
-
Objective model
-
Filter set
-

Related paper(s)

Tomohiro Shima, Manatsu Morikawa, Junichi Kaneshiro, Taketoshi Kambara, Shinji Kamimura, Toshiki Yagi, Hiroyuki Iwamoto, Sotaro Uemura, Hideki Shigematsu, Mikako Shirouzu, Taro Ichimura, Tomonobu M Watanabe, Ryo Nitta, Yasushi Okada, Nobutaka Hirokawa (2018) Kinesin-binding-triggered conformation switching of microtubules contributes to polarized transport., The Journal of cell biology, Volume 217, Number 12, pp. 4164-4183

Published in 2018 Dec 3 (Electronic publication in Oct. 8, 2018, midnight )

(Abstract) Kinesin-1, the founding member of the kinesin superfamily of proteins, is known to use only a subset of microtubules for transport in living cells. This biased use of microtubules is proposed as the guidance cue for polarized transport in neurons, but the underlying mechanisms are still poorly understood. Here, we report that kinesin-1 binding changes the microtubule lattice and promotes further kinesin-1 binding. This high-affinity state requires the binding of kinesin-1 in the nucleotide-free state. Microtubules return to the initial low-affinity state by washing out the binding kinesin-1 or by the binding of non-hydrolyzable ATP analogue AMPPNP to kinesin-1. X-ray fiber diffraction, fluorescence speckle microscopy, and second-harmonic generation microscopy, as well as cryo-EM, collectively demonstrated that the binding of nucleotide-free kinesin-1 to GDP microtubules changes the conformation of the GDP microtubule to a conformation resembling the GTP microtubule.
(MeSH Terms)

Contact
Yasushi Okada, Nobutaka Hirokawa , RIKEN BDR, The University of Tokyo , Laboratory for Cell Polarity Regulation, Department of Cell Biology and Anatomy, Graduate School of Medicine , Laboratory for Cell Polarity Regulation, Department of Cell Biology and Anatomy, Graduate School of Medicine
Contributors
Tomohiro Shima, Sotaro Uemura, Yasushi Okada


Dataset List of 191-Shima-KIF5Cmove

#
Dataset ID
Kind
Size
4D View
SSBD:OMERO
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# 11820
Dataset Kind Image data
Dataset Size 506.7 MB
4D view
SSBD:OMERO
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# 11821
Dataset Kind Image data
Dataset Size 506.7 MB
4D view
SSBD:OMERO
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# 11822
Dataset Kind Image data
Dataset Size 245.7 MB
4D view
SSBD:OMERO
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# 11823
Dataset Kind Image data
Dataset Size 198.5 MB
4D view
SSBD:OMERO
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# 11824
Dataset Kind Image data
Dataset Size 189.0 MB
4D view
SSBD:OMERO
Download BDML
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# 11825
Datast ID FigS3AB_MTcompact
Dataset Kind Image data
Dataset Size 42.6 MB
4D view
SSBD:OMERO
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Download Image data