Summary of 299-Satoh-Endosome

SSBD:database
SSBD:database URL
Title
Endosome maturation promoted by interorganelle association between mitochondria and endosomes
Description
-
Relase date
2024-12-14
Updated date
-
License
CC-BY
Kind
Image data based on Experiment
Number of Datasets
14 ( Image datasets: 14, Quantitative data datasets: 0 )
Size of Datasets
1.1 GB ( Image datasets: 1.1 GB, Quantitative data datasets: 0 bytes )

Organism(s)
Homo sapiens
Cell lines(s)
A431 cell

Datatype
-
Molecular Function (MF)
Biological Process (BP)
endosomal lumen acidification, organelle assembly, epidermal growth factor receptor signaling pathway
Cellular Component (CC)
late endosome, mitochondrion, early endosome, endosome
Biological Imaging Method
fluorescence microscopy, confocal microscopy, time lapse microscopy
X scale
0.108333 micrometer/pixel, 0.169634 micrometer/pixel, 0.0773929 micrometer/pixel, 0.0361167 micrometer/pixel, 0.333333 micrometer/pixel, 0.00697525 micrometer/pixel, 0.152671 micrometer/pixel, 0.0477097 micrometer/pixel, 0.0545254 micrometer/pixel
Y scale
0.108333 micrometer/pixel, 0.169634 micrometer/pixel, 0.0773929 micrometer/pixel, 0.0361167 micrometer/pixel, 0.333333 micrometer/pixel, 0.00697525 micrometer/pixel, 0.152671 micrometer/pixel, 0.0477097 micrometer/pixel, 0.0545254 micrometer/pixel
Z scale
-
T scale
3 minutes per time interval, 1 minute per time interval, 30 seconds per time interval, 2 minutes per time interval, 10 seconds per time interval

Image Acquisition
Experiment type
-
Microscope type
-
Acquisition mode
-
Contrast method
-
Microscope model
-
Detector model
-
Objective model
-
Filter set
-

Related paper(s)

Aya O Satoh, Yoichiro Fujioka, Sayaka Kashiwagi, Aiko Yoshida, Mari Fujioka, Hitoshi Sasajima, Asuka Nanbo, Maho Amano, Yusuke Ohba (2023) Interaction between PI3K and the VDAC2 channel tethers Ras-PI3K-positive endosomes to mitochondria and promotes endosome maturation., Cell reports, Volume 42, Number 3, pp. 112229

Published in 2023 Mar 10 (Electronic publication in March 10, 2023, midnight )

(Abstract) Intracellular organelles of mammalian cells communicate with one another during various cellular processes. The functions and molecular mechanisms of such interorganelle association remain largely unclear, however. We here identify voltage-dependent anion channel 2 (VDAC2), a mitochondrial outer membrane protein, as a binding partner of phosphoinositide 3-kinase (PI3K), a regulator of clathrin-independent endocytosis downstream of the small GTPase Ras. VDAC2 tethers endosomes positive for the Ras-PI3K complex to mitochondria in response to cell stimulation with epidermal growth factor and promotes clathrin-independent endocytosis, as well as endosome maturation at membrane association sites. With an optogenetics system to induce mitochondrion-endosome association, we find that, in addition to its structural role in such association, VDAC2 is functionally implicated in the promotion of endosome maturation. The mitochondrion-endosome association thus plays a role in the regulation of clathrin-independent endocytosis and endosome maturation.

Contact
Yusuke Ohba , Hokkaido University , Department of Cell Physiology
Contributors
Aya O. Satoh, Yoichiro Fujioka


Dataset List of 299-Satoh-Endosome

#
Dataset ID
Kind
Size
4D View
SSBD:OMERO
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# 11726
Datast ID VideoS1_siRNA_ctrl
Dataset Kind Image data
Dataset Size 120.9 MB
4D view
SSBD:OMERO
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# 11727
Dataset Kind Image data
Dataset Size 120.9 MB
4D view
SSBD:OMERO
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# 11728
Datast ID VideoS3_EEA1
Dataset Kind Image data
Dataset Size 830.1 KB
4D view
SSBD:OMERO
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# 11729
Datast ID FigS4A_EEA1
Dataset Kind Image data
Dataset Size 2.8 MB
4D view
SSBD:OMERO
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# 11730
Dataset Kind Image data
Dataset Size 1.7 MB
4D view
SSBD:OMERO
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# 11731
Datast ID VideoS4_Rab7
Dataset Kind Image data
Dataset Size 16.5 MB
4D view
SSBD:OMERO
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# 11732
Datast ID FigS4B_Rab7_1
Dataset Kind Image data
Dataset Size 13.1 MB
4D view
SSBD:OMERO
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# 11733
Datast ID FigS4B_Rab7_2
Dataset Kind Image data
Dataset Size 13.1 MB
4D view
SSBD:OMERO
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# 11734
Datast ID VideoS5_siRNA_ctrl
Dataset Kind Image data
Dataset Size 61.1 MB
4D view
SSBD:OMERO
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# 11735
Dataset Kind Image data
Dataset Size 57.8 MB
4D view
SSBD:OMERO
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# 11736
Dataset Kind Image data
Dataset Size 4.3 MB
4D view
SSBD:OMERO
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# 11737
Dataset Kind Image data
Dataset Size 60.4 MB
4D view
SSBD:OMERO
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# 11738
Dataset Kind Image data
Dataset Size 336.5 MB
4D view
SSBD:OMERO
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# 11739
Dataset Kind Image data
Dataset Size 336.5 MB
4D view
SSBD:OMERO
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