Summary of 68-Sakaguchi-NeuronFluo
Title
A set of labeling images of neuronal circuits labeling with fluorescent proteins in M. musculus
Kind
Image data
based on Experiment
Number of Datasets
67
( Image datasets: 67,
Quantitative data datasets: 0 )
Size of Datasets
269.1 GB
( Image datasets: 269.1 GB,
Quantitative data datasets: 0 bytes )
Datatype
neuronal morphology
Biological Process (BP)
cell morphogenesis involved in neuron differentiation, olfactory behavior
Cellular Component (CC)
dendrite
Biological Imaging Method
-
XYZ Scale
XY: 0.0946507 micrometer/pixel, Z: 1 micrometer/slice, XY: 0.2839521 micrometer/pixel, Z: 0.7497749 micrometer/slice, XY: 0.0180287 micrometer/pixel, Z: 0.2422349 micrometer/slice, XY: 0.2840909 micrometer/pixel, Z: 0.9999284 micrometer/slice, XY: 0.300478 micrometer/pixel, Z: 0.242235 micrometer/slice, XY: 0.0901435 micrometer/pixel, Z: 0.3345151 micrometer/slice, XY: 0.0180287 micrometer/pixel, Z: 0.242235 micrometer/slice, XY: 1.5152 micrometer/pixel, Z: 10.0008 micrometer/slice, XY: 0.0901435 micrometer/pixel, Z: 0.9997 micrometer/slice, XY: 0.5677 micrometer/pixel, Z: 20.0016909 micrometer/slice, XY: 0.0901435 micrometer/pixel, Z: 1 micrometer/slice, XY: 0.7570693 micrometer/pixel, Z: 4.9985 micrometer/slice, XY: 0.7569968 micrometer/pixel, Z: 4.9985 micrometer/slice, XY: 0.0946507 micrometer/pixel, Z: 1.9994 micrometer/slice, XY: 0.5679043 micrometer/pixel, Z: 1 micrometer/slice, XY: 0.070988 micrometer/pixel, Z: 1.0419952 micrometer/slice, XY: 0.0189302 micrometer/pixel, Z: 0.33067 micrometer/slice, XY: 0.0450718 micrometer/pixel, Z: 0.242235 micrometer/slice, XY: 0.3786028 micrometer/pixel, Z: 1.03815 micrometer/slice, XY: 0.0300478 micrometer/pixel, Z: 0.3306699 micrometer/slice
Image Acquisition
Experiment type
Other
Microscope type
ConfocalMicroscope
Acquisition mode
FluorescenceCorrelationSpectroscopy
Contrast method
Fluorescence
Microscope model
TCS SP8X
Detector model
Leica HyD
Objective model
-
Filter set
-
Related paper(s)
Richi Sakaguchi, Marcus N Leiwe, Takeshi Imai (2018) Bright multicolor labeling of neuronal circuits with fluorescent proteins and chemical tags., eLife, Volume 7
Published in 2018 Nov 20
(Electronic publication in Nov. 20, 2018, midnight )
(Abstract) The stochastic multicolor labeling method 'Brainbow' is a powerful strategy to label multiple neurons differentially with fluorescent proteins; however, the fluorescence levels provided by the original attempts to use this strategy were inadequate. In the present study, we developed a stochastic multicolor labeling method with enhanced expression levels that uses a tetracycline-operator system (Tetbow). We optimized Tetbow for either plasmid or virus vector-mediated multicolor labeling. When combined with tissue clearing, Tetbow was powerful enough to visualize the three-dimensional architecture of individual neurons. Using Tetbow, we were able to visualize the axonal projection patterns of individual mitral/tufted cells along several millimeters in the mouse olfactory system. We also developed a Tetbow system with chemical tags, in which genetically encoded chemical tags were labeled with synthetic fluorophores. This was useful in expanding the repertoire of the fluorescence labels and the applications of the Tetbow system. Together, these new tools facilitate light-microscopy-based neuronal tracing at both a large scale and a high resolution.
(MeSH Terms)
Contact
Takeshi Imai
, Kyushu University
, Graduate School of Medical Sciences
, Department of Developmental Neurophysiology
Contributors
Richi Sakaguchi, Marcus N. Leiwe, Takeshi Imai
SSBD:OMERO.gallery Project
SSBD:OMERO Project
Dataset List of 68-Sakaguchi-NeuronFluo
#
Dataset ID
Kind
Size
4D View
SSBD:OMERO
Download BDML
Download Images
Dataset Kind
Image data
Dataset Size
2.4 GB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (192.5 MB)
Dataset Kind
Image data
Dataset Size
2.4 GB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (55.7 MB)
Dataset Kind
Image data
Dataset Size
2.4 GB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (207.8 MB)
Dataset Kind
Image data
Dataset Size
2.3 GB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (426.9 MB)
Dataset Kind
Image data
Dataset Size
2.4 GB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (235.4 MB)
Dataset Kind
Image data
Dataset Size
2.4 GB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (127.7 MB)
Dataset Kind
Image data
Dataset Size
2.4 GB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (32.4 MB)
Dataset Kind
Image data
Dataset Size
2.4 GB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (395.1 MB)
Dataset Kind
Image data
Dataset Size
2.4 GB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (106.4 MB)
Dataset Kind
Image data
Dataset Size
14.4 GB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (531.2 MB)
Dataset Kind
Image data
Dataset Size
600.3 MB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (44.8 MB)
Dataset Kind
Image data
Dataset Size
11.8 GB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (653.1 MB)
Dataset Kind
Image data
Dataset Size
600.3 MB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (33.8 MB)
Dataset Kind
Image data
Dataset Size
2.4 GB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (197.6 MB)
Dataset Kind
Image data
Dataset Size
2.4 GB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (198.6 MB)
Dataset Kind
Image data
Dataset Size
2.4 GB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (141.3 MB)
Dataset Kind
Image data
Dataset Size
2.4 GB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (272.6 MB)
Dataset Kind
Image data
Dataset Size
2.4 GB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (226.7 MB)
Dataset Kind
Image data
Dataset Size
2.4 GB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (134.8 MB)
Dataset Kind
Image data
Dataset Size
2.4 GB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (165.9 MB)
Dataset Kind
Image data
Dataset Size
2.4 GB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (121.2 MB)
Dataset Kind
Image data
Dataset Size
2.4 GB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (205.7 MB)
Dataset Kind
Image data
Dataset Size
2.4 GB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (203.0 MB)
Dataset Kind
Image data
Dataset Size
2.4 GB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (86.7 MB)
Dataset Kind
Image data
Dataset Size
2.4 GB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (196.3 MB)
Dataset Kind
Image data
Dataset Size
2.4 GB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (208.4 MB)
Dataset Kind
Image data
Dataset Size
2.4 GB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (350.5 MB)
Dataset Kind
Image data
Dataset Size
2.4 GB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (241.0 MB)
Dataset Kind
Image data
Dataset Size
2.4 GB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (235.9 MB)
Dataset Kind
Image data
Dataset Size
2.4 GB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (202.9 MB)
Dataset Kind
Image data
Dataset Size
2.4 GB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (115.0 MB)
Dataset Kind
Image data
Dataset Size
2.4 GB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (198.3 MB)
Dataset Kind
Image data
Dataset Size
2.4 GB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (194.4 MB)
Dataset Kind
Image data
Dataset Size
2.4 GB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (145.5 MB)
Dataset Kind
Image data
Dataset Size
2.4 GB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (383.4 MB)
Dataset Kind
Image data
Dataset Size
2.4 GB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (51.7 MB)
Dataset Kind
Image data
Dataset Size
1.4 GB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (246.4 MB)
Dataset Kind
Image data
Dataset Size
3.2 GB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (494.6 MB)
Dataset Kind
Image data
Dataset Size
1.1 GB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (98.8 MB)
Dataset Kind
Image data
Dataset Size
599.7 MB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (36.8 MB)
Dataset Kind
Image data
Dataset Size
408.3 MB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (66.9 MB)
Dataset Kind
Image data
Dataset Size
408.3 MB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (66.5 MB)
Dataset Kind
Image data
Dataset Size
8.0 GB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (1.0 GB)
Dataset Kind
Image data
Dataset Size
3.2 GB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (403.1 MB)
Dataset Kind
Image data
Dataset Size
4.3 GB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (444.2 MB)
Dataset Kind
Image data
Dataset Size
3.2 GB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (534.3 MB)
Dataset Kind
Image data
Dataset Size
3.2 GB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (317.9 MB)
Dataset Kind
Image data
Dataset Size
168.6 MB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (25.6 MB)
Dataset Kind
Image data
Dataset Size
4.5 GB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (374.3 MB)
Dataset Kind
Image data
Dataset Size
2.8 GB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (323.3 MB)
Dataset Kind
Image data
Dataset Size
650.6 MB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (17.4 MB)
Dataset Kind
Image data
Dataset Size
385.5 MB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (7.7 MB)
Dataset Kind
Image data
Dataset Size
192.8 MB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (11.0 MB)
Dataset Kind
Image data
Dataset Size
385.5 MB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (7.3 MB)
Dataset Kind
Image data
Dataset Size
265.1 MB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (13.6 MB)
Dataset Kind
Image data
Dataset Size
1012.1 MB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (27.3 MB)
Dataset Kind
Image data
Dataset Size
867.5 MB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (20.8 MB)
Dataset Kind
Image data
Dataset Size
457.8 MB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (6.0 MB)
Dataset Kind
Image data
Dataset Size
5.3 GB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (441.7 MB)
Dataset Kind
Image data
Dataset Size
16.0 GB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (920.1 MB)
Dataset Kind
Image data
Dataset Size
6.2 GB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (551.3 MB)
Dataset Kind
Image data
Dataset Size
26.4 GB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (1.3 GB)
Dataset Kind
Image data
Dataset Size
13.9 GB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (1.2 GB)
Dataset Kind
Image data
Dataset Size
28.5 GB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (4.3 GB)
Dataset Kind
Image data
Dataset Size
24.1 MB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (6.0 MB)
Dataset Kind
Image data
Dataset Size
26.8 GB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (767.3 MB)
Dataset Kind
Image data
Dataset Size
2.3 GB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (395.4 MB)