Summary of 293-Kimata-PlantInhibit

SSBD:database
SSBD:database URL
Title
Novel inhibitors of microtubule organization and phragmoplast formation in diverse plant species
Description
-
Relase date
2024-12-14
Updated date
-
License
CC-BY
Kind
Image data based on Experiment
Number of Datasets
24 ( Image datasets: 24, Quantitative data datasets: 0 )
Size of Datasets
13.4 GB ( Image datasets: 13.4 GB, Quantitative data datasets: 0 bytes )

Organism(s)
Arabidopsis thaliana, Physcomitrium patens, Nicotiana tabacum

Datatype
-
Molecular Function (MF)
Biological Process (BP)
cytoskeleton organization, cell division
Cellular Component (CC)
nucleus, phragmoplast, plasma membrane, cytoskeleton
Biological Imaging Method
two-photon laser scanning microscopy, confocal microscopy, time lapse microscopy
X scale
0.134 micrometer/pixel, 1.32 micrometer/pixel, 1.67 micrometer/pixel, 0.205 micrometer/pixel, 0.138 micrometer/pixel, 0.417 micrometer/pixel, 0.142 micrometer/pixel
Y scale
0.134 micrometer/pixel, 1.32 micrometer/pixel, 1.67 micrometer/pixel, 0.205 micrometer/pixel, 0.138 micrometer/pixel, 0.417 micrometer/pixel, 0.142 micrometer/pixel
Z scale
10 micrometer/slice, NA, 5 micrometer/slice, 1 micrometer/slice
T scale
3 minutes per time interval, 20 minutes per time interval, 30 seconds per time interval, 5 minutes per time interval, 10 minutes per time interval

Image Acquisition
Experiment type
-
Microscope type
-
Acquisition mode
-
Contrast method
-
Microscope model
-
Detector model
-
Objective model
-
Filter set
-

Related paper(s)

Yusuke Kimata, Moe Yamada, Takashi Murata, Keiko Kuwata, Ayato Sato, Takamasa Suzuki, Daisuke Kurihara, Mitsuyasu Hasebe, Tetsuya Higashiyama, Minako Ueda (2023) Novel inhibitors of microtubule organization and phragmoplast formation in diverse plant species., Life science alliance, Volume 6, Number 5

Published in 2023 May (Electronic publication in Feb. 27, 2023, midnight )

(Abstract) Cell division is essential for development and involves spindle assembly, chromosome separation, and cytokinesis. In plants, the genetic tools for controlling the events in cell division at the desired time are limited and ineffective owing to high redundancy and lethality. Therefore, we screened cell division-affecting compounds in Arabidopsis thaliana zygotes, whose cell division is traceable without time-lapse observations. We then determined the target events of the identified compounds using live-cell imaging of tobacco BY-2 cells. Subsequently, we isolated two compounds, PD-180970 and PP2, neither of which caused lethal damage. PD-180970 disrupted microtubule (MT) organization and, thus, nuclear separation, and PP2 blocked phragmoplast formation and impaired cytokinesis. Phosphoproteomic analysis showed that these compounds reduced the phosphorylation of diverse proteins, including MT-associated proteins (MAP70) and class II Kinesin-12. Moreover, these compounds were effective in multiple plant species, such as cucumber (Cucumis sativus) and moss (Physcomitrium patens). These properties make PD-180970 and PP2 useful tools for transiently controlling plant cell division at key manipulation nodes conserved across diverse plant species.

Contact
Minako Ueda , Tohoku University , Graduate School of Life Sciences
Contributors
Yusuke Kimata, Moe Yamada, Takashi Murata


Dataset List of 293-Kimata-PlantInhibit

#
Dataset ID
Kind
Size
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SSBD:OMERO
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# 11782
Datast ID Fig1D_CellDiv_DMSO
Dataset Kind Image data
Dataset Size 1.1 GB
4D view
SSBD:OMERO
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# 11783
Dataset Kind Image data
Dataset Size 1.1 GB
4D view
SSBD:OMERO
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# 11784
Dataset Kind Image data
Dataset Size 1.1 GB
4D view
SSBD:OMERO
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# 11785
Datast ID Fig1G_CellDiv_PP2
Dataset Kind Image data
Dataset Size 1.1 GB
4D view
SSBD:OMERO
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# 11786
Datast ID Fig1H_MT_DMSO
Dataset Kind Image data
Dataset Size 349.0 MB
4D view
SSBD:OMERO
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# 11787
Datast ID Fig1I_MT_Oryzalin
Dataset Kind Image data
Dataset Size 341.2 MB
4D view
SSBD:OMERO
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# 11788
Datast ID Fig1J_MT_PD-180970
Dataset Kind Image data
Dataset Size 349.0 MB
4D view
SSBD:OMERO
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# 11789
Datast ID Fig1K_MT_PP2
Dataset Kind Image data
Dataset Size 341.3 MB
4D view
SSBD:OMERO
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# 11790
Datast ID FigS1B_DMSO
Dataset Kind Image data
Dataset Size 1.5 GB
4D view
SSBD:OMERO
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# 11791
Datast ID FigS1B_Oryzalin
Dataset Kind Image data
Dataset Size 1.5 GB
4D view
SSBD:OMERO
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# 11792
Datast ID FigS1B_PD180970
Dataset Kind Image data
Dataset Size 1.5 GB
4D view
SSBD:OMERO
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# 11793
Datast ID FigS1B_PP2
Dataset Kind Image data
Dataset Size 1.5 GB
4D view
SSBD:OMERO
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# 11794
Dataset Kind Image data
Dataset Size 87.6 MB
4D view
SSBD:OMERO
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# 11795
Dataset Kind Image data
Dataset Size 43.3 MB
4D view
SSBD:OMERO
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# 11796
Dataset Kind Image data
Dataset Size 64.7 MB
4D view
SSBD:OMERO
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# 11797
Dataset Kind Image data
Dataset Size 49.7 MB
4D view
SSBD:OMERO
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# 11798
Datast ID FigS8A_none
Dataset Kind Image data
Dataset Size 13.1 MB
4D view
SSBD:OMERO
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# 11799
Datast ID FigS8A_pp2
Dataset Kind Image data
Dataset Size 13.1 MB
4D view
SSBD:OMERO
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# 11800
Datast ID FigS8B_none
Dataset Kind Image data
Dataset Size 13.1 MB
4D view
SSBD:OMERO
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# 11801
Datast ID FigS8B_pp2
Dataset Kind Image data
Dataset Size 13.1 MB
4D view
SSBD:OMERO
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# 11802
Datast ID Fig4B_dmso
Dataset Kind Image data
Dataset Size 88.8 MB
4D view
SSBD:OMERO
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# 11803
Datast ID Fig4B_pp2
Dataset Kind Image data
Dataset Size 78.8 MB
4D view
SSBD:OMERO
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# 11804
Datast ID FigS9C_DMSO
Dataset Kind Image data
Dataset Size 800.1 MB
4D view
SSBD:OMERO
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# 11805
Datast ID FigS9C_PP2
Dataset Kind Image data
Dataset Size 800.1 MB
4D view
SSBD:OMERO
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