Summary of 140-Hirata-MouseBrainSlice
Title
Atlas of neuronal birthdate tagging mouse lines
Kind
Image data
based on Experiment
Number of Datasets
84
( Image datasets: 84,
Quantitative data datasets: 0 )
Size of Datasets
1.6 TB
( Image datasets: 1.6 TB,
Quantitative data datasets: 0 bytes )
Strain(s)
C57BL/6
Neurog1CreER(G1C); TaumGFP-nLacZ, C57BL/6
Neurod1CreER(D1B); TaumGFP-nLacZ, C57BL/6
Neurog2CreER(G2A); TaumGFP-nLacZ, C57BL/6
Neurod4CreER(D4A); TaumGFP-nLacZ
Reporter(s)
DAB, anti-GFP antibody, anti-beta-galactosidase antibody
Molecular Function (MF)
-
Biological Process (BP)
nervous system development
Cellular Component (CC)
neuron projection, plasma membrane, nucleus, cell body
Biological Imaging Method
bright-field microscopy
X scale
1.0 micrometer/pixel
Y scale
1.0 micrometer/pixel
Z scale
20 micrometer/slice
Image Acquisition
Experiment type
-
Microscope type
-
Acquisition mode
-
Contrast method
-
Microscope model
-
Detector model
-
Objective model
-
Filter set
-
Related paper(s)
Tatsumi Hirata, Yukako Tohsato, Hiroya Itoga, Go Shioi, Hiroshi Kiyonari, Sanae Oka, Toshihiko Fujimori, Shuichi Onami (2021) NeuroGT: A brain atlas of neurogenic tagging CreER drivers for birthdate-based classification and manipulation of mouse neurons., Cell reports methods, Volume 1, Number 3, pp. 100012
Published in 2021 Jul 26
(Electronic publication in May 25, 2021, midnight )
(Abstract) Neuronal birthdate is one of the major determinants of neuronal phenotypes. However, most birthdating methods are retrospective in nature, allowing very little experimental access to the classified neuronal subsets. Here, we introduce four neurogenic tagging mouse lines, which can assign CreER-loxP recombination to neuron subsets that share the same differentiation timing in living animals and enable various experimental manipulations of the classified subsets. We constructed a brain atlas of the neurogenic tagging mouse lines (NeuroGT), which includes holistic image data of the loxP-recombined neurons and their processes across the entire brain that were tagged on each single day during the neurodevelopmental period. This image database, which is open to the public, offers investigators the opportunity to find specific neurogenic tagging driver lines and the stages of tagging appropriate for their own research purposes.
Contact
Tatsumi Hirata
, National Institute of Genetics
, Brain Function Laboratory
Contributors
Toshihiko Fujimori
SSBD:OMERO.gallery Project
SSBD:OMERO Project
Dataset List of 140-Hirata-MouseBrainSlice
#
Dataset ID
Kind
Size
4D View
SSBD:OMERO
Download BDML
Download Images
Dataset Kind
Image data
Dataset Size
19.1 GB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (19.1 GB)
Dataset Kind
Image data
Dataset Size
15.1 GB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (15.1 GB)
Dataset Kind
Image data
Dataset Size
16.6 GB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (16.6 GB)
Dataset Kind
Image data
Dataset Size
15.6 GB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (15.6 GB)
Dataset Kind
Image data
Dataset Size
18.0 GB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (18.0 GB)
Dataset Kind
Image data
Dataset Size
16.9 GB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (16.9 GB)
Dataset Kind
Image data
Dataset Size
21.0 GB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (21.0 GB)
Dataset Kind
Image data
Dataset Size
20.7 GB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (20.7 GB)
Dataset Kind
Image data
Dataset Size
17.5 GB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (17.5 GB)
Dataset Kind
Image data
Dataset Size
15.4 GB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (15.4 GB)
Dataset Kind
Image data
Dataset Size
18.3 GB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (18.3 GB)
Dataset Kind
Image data
Dataset Size
18.1 GB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (18.1 GB)
Dataset Kind
Image data
Dataset Size
18.3 GB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (18.3 GB)
Dataset Kind
Image data
Dataset Size
17.0 GB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (17.0 GB)
Dataset Kind
Image data
Dataset Size
23.0 GB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (23.0 GB)
Dataset Kind
Image data
Dataset Size
21.1 GB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (21.1 GB)
Dataset Kind
Image data
Dataset Size
22.6 GB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (22.6 GB)
Dataset Kind
Image data
Dataset Size
21.1 GB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (21.1 GB)
Dataset Kind
Image data
Dataset Size
21.7 GB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (21.7 GB)
Dataset Kind
Image data
Dataset Size
21.0 GB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (21.0 GB)
Dataset Kind
Image data
Dataset Size
22.3 GB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (22.3 GB)
Dataset Kind
Image data
Dataset Size
20.5 GB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (20.5 GB)
Dataset Kind
Image data
Dataset Size
24.4 GB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (24.4 GB)
Dataset Kind
Image data
Dataset Size
18.4 GB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (18.4 GB)
Dataset Kind
Image data
Dataset Size
18.9 GB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (18.9 GB)
Dataset Kind
Image data
Dataset Size
16.3 GB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (16.3 GB)
Dataset Kind
Image data
Dataset Size
22.0 GB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (22.0 GB)
Dataset Kind
Image data
Dataset Size
17.9 GB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (17.9 GB)
Dataset Kind
Image data
Dataset Size
19.9 GB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (19.9 GB)
Dataset Kind
Image data
Dataset Size
18.0 GB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (18.0 GB)
Dataset Kind
Image data
Dataset Size
24.9 GB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (24.9 GB)
Dataset Kind
Image data
Dataset Size
25.2 GB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (25.2 GB)
Dataset Kind
Image data
Dataset Size
17.3 GB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (17.3 GB)
Dataset Kind
Image data
Dataset Size
16.0 GB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (16.0 GB)
Dataset Kind
Image data
Dataset Size
16.5 GB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (16.5 GB)
Dataset Kind
Image data
Dataset Size
14.9 GB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (14.9 GB)
Dataset Kind
Image data
Dataset Size
22.7 GB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (22.7 GB)
Dataset Kind
Image data
Dataset Size
22.4 GB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (22.4 GB)
Dataset Kind
Image data
Dataset Size
16.1 GB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (16.1 GB)
Dataset Kind
Image data
Dataset Size
15.4 GB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (15.4 GB)
Dataset Kind
Image data
Dataset Size
22.7 GB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (22.7 GB)
Dataset Kind
Image data
Dataset Size
21.6 GB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (21.6 GB)
Dataset Kind
Image data
Dataset Size
21.0 GB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (21.0 GB)
Dataset Kind
Image data
Dataset Size
20.3 GB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (20.3 GB)
Dataset Kind
Image data
Dataset Size
24.2 GB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (24.2 GB)
Dataset Kind
Image data
Dataset Size
20.4 GB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (20.4 GB)
Dataset Kind
Image data
Dataset Size
15.2 GB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (15.2 GB)
Dataset Kind
Image data
Dataset Size
13.8 GB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (13.8 GB)
Dataset Kind
Image data
Dataset Size
15.6 GB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (15.6 GB)
Dataset Kind
Image data
Dataset Size
14.2 GB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (14.2 GB)
Dataset Kind
Image data
Dataset Size
21.2 GB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (21.2 GB)
Dataset Kind
Image data
Dataset Size
20.8 GB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (20.8 GB)
Dataset Kind
Image data
Dataset Size
19.4 GB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (19.4 GB)
Dataset Kind
Image data
Dataset Size
16.3 GB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (16.3 GB)
Dataset Kind
Image data
Dataset Size
23.2 GB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (23.2 GB)
Dataset Kind
Image data
Dataset Size
19.0 GB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (19.0 GB)
Dataset Kind
Image data
Dataset Size
20.3 GB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (20.3 GB)
Dataset Kind
Image data
Dataset Size
20.7 GB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (20.7 GB)
Dataset Kind
Image data
Dataset Size
22.1 GB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (22.1 GB)
Dataset Kind
Image data
Dataset Size
18.0 GB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (18.0 GB)
Dataset Kind
Image data
Dataset Size
24.3 GB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (24.3 GB)
Dataset Kind
Image data
Dataset Size
23.2 GB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (23.2 GB)
Dataset Kind
Image data
Dataset Size
22.2 GB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (22.2 GB)
Dataset Kind
Image data
Dataset Size
19.3 GB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (19.3 GB)
Dataset Kind
Image data
Dataset Size
21.7 GB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (21.7 GB)
Dataset Kind
Image data
Dataset Size
18.9 GB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (18.9 GB)
Dataset Kind
Image data
Dataset Size
19.8 GB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (19.8 GB)
Dataset Kind
Image data
Dataset Size
19.3 GB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (19.3 GB)
Dataset Kind
Image data
Dataset Size
25.3 GB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (25.3 GB)
Dataset Kind
Image data
Dataset Size
22.9 GB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (22.9 GB)
Dataset Kind
Image data
Dataset Size
22.0 GB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (22.0 GB)
Dataset Kind
Image data
Dataset Size
19.0 GB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (19.0 GB)
Dataset Kind
Image data
Dataset Size
20.0 GB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (20.0 GB)
Dataset Kind
Image data
Dataset Size
19.0 GB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (19.0 GB)
Dataset Kind
Image data
Dataset Size
24.2 GB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (24.2 GB)
Dataset Kind
Image data
Dataset Size
23.9 GB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (23.9 GB)
Dataset Kind
Image data
Dataset Size
24.2 GB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (24.2 GB)
Dataset Kind
Image data
Dataset Size
23.0 GB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (23.0 GB)
Dataset Kind
Image data
Dataset Size
21.8 GB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (21.8 GB)
Dataset Kind
Image data
Dataset Size
19.4 GB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (19.4 GB)
Dataset Kind
Image data
Dataset Size
25.6 GB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (25.6 GB)
Dataset Kind
Image data
Dataset Size
24.5 GB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (24.5 GB)
Dataset Kind
Image data
Dataset Size
19.6 GB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (19.6 GB)
Dataset Kind
Image data
Dataset Size
19.8 GB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (19.8 GB)