Project
Release
Title(s)
Organism
Size
Method Summary
Paper information
Release
2023-08-15
Title
x-y coordinates of Caenorhabditis elegans centroids stimulated with electric shock
Organism
Caenorhabditis elegans
Size
38.7 MB
Method Summary
Paper Information
Tee LF et. al. (2023), Genetics
doi:
10.1093/genetics/iyad148
pmid:
37595066
Release
2023-08-07
Title
All four knockout of ErbB-family genes delineates their roles in proliferation, survival, and collective cell migration of epithelial cells.
Organism
canis familiaris
Size
64.4 GB
Method Summary
Most of the time-lapse images were obtained with epifluorescence microscopy. Some of the experiments were done with confocal mi…
Paper Information
Matsuda K et. al. (2023), J Cell Sci
doi:
10.1242/jcs.261199
pmid:
37519219
Release
2023-07-20
Title
Identifying a lung stem cell subpopulation by combining single-cell morphometrics, organoid culture, and transcriptomics
Organism
Mus musculus, Homo sapiens
Size
6.5 GB
Method Summary
Paper Information
Fujimura T et. al. (2023), Stem Cells
doi:
10.1093/stmcls/sxad044
pmid:
37468433
Release
2023-06-09
Title
Nuclear shape of excitatory neurons in the visual cortex upon visual stimulation of young and aged mice
Organism
Mus Musculus
Size
2.5 GB
Method Summary
See detail in Frey et al., bioRxiv, 2022
Paper Information
Tanita Frey et. al. (2022/01/01), 2022.08.22.504704
doi:
10.1101/2022.08.22.504704
Release
2023-06-07
Title
Imaging data in the paper, "Activity-dependent local protection and lateral inhibition mediate synaptic competition in developing mitral cells" (Fujimoto et al., 2023).
Organism
Mus musculus
Size
752.0 GB
Method Summary
Paper Information
Fujimoto S et. al. (2023), Dev Cell
doi:
10.1016/j.devcel.2023.05.004
pmid:
37290446
Release
2023-04-26
Title
Fiber photometry traces of the kisspeptin neurons in the arcuate nucleus of the hypothalamus in young and aging mice
Organism
Mus musculus
Size
16.1 GB
Method Summary
See detail in Dynamics of Pulsatile Activities of Arcuate Kisspeptin Neurons in Aging Female Mice. Goto T et al. (2022), BioRxiv
Paper Information
Teppei Goto et. al. (2023/01/01), 2022.08.08.503241
doi:
10.1101/2022.08.08.503241
Goto T et. al. (2023), Elife 12
doi:
10.7554/eLife.82533
pmid:
37223988
Release
2023-04-13
Title
Bright-field images of the liverwort Marchantia polymorpha ssp. ruderalis in gemmalings (dorsal view).
Organism
Marchantia polymorpha
Size
32.2 GB
Method Summary
Paper Information
Release
2023-03-09
Title
Epidermal growth factor receptor signaling protects epithelia from morphogenetic instability and tissue damage in Drosophila
Organism
Drosophila melanogaster
Size
146.3 GB
Method Summary
Described in the manuscript.
Paper Information
Yoshida, Kentaro and Hayashi, Shigeo (2022/01/01), 2022.08.28.505615
doi:
10.1101/2022.08.28.505615
Yoshida K and Hayashi S (2023), Development 150(5)
doi:
10.1242/dev.201231
pmid:
36897356
Release
2022-12-15
Title
Bright-field time-lapse images of live murine immune-related cells
Organism
Mus musculus
Size
798.8 MB
Method Summary
Iamges were captured using an inverted optical microscope (Eclipse Ti2-E, Nikon) with an 20X objective lens (CFI Plan Apochroma…
Paper Information
Jin J et. al. (2023), Proc Natl Acad Sci U S A 120(1), e2210283120
doi:
10.1073/pnas.2210283120
pmid:
36577074
Release
2022-09-29
Title
Imaging dataset of migrating MDCK cells and wounded mouse ear skin.
Organism
Canis familiaris, Mus musculus
Size
81.9 GB
Method Summary
See details in Hino, N., Matsuda, K., Jikko, Y., Maryu, G., Sakai, K., Imamura, R., Tsukiji, S., Aoki, K., Terai, K., Hirashima…
Paper Information
Hino N et. al. (2022), Dev Cell 57(19), 2290-2304.e7
doi:
10.1016/j.devcel.2022.09.003
pmid:
36174555
Release
2022-06-30
Title
Cell membrane images, restored images, and segmentation results of 52 C. elegans embryos.
Organism
Caenorhabditis elegans
Size
236.3 GB
Method Summary
Image processing, deep learning
Paper Information
Azuma, Yusuke et. al. (2023), Frontiers in Bioinformatics 3
doi:
10.3389/fbinf.2023.1082531
Release
2022-04-21
Title
Quantitative live-cell imaging of GPCR downstream signaling dynamics.
Organism
Homo sapiens
Size
10.3 GB
Method Summary
Tany R, Goto Y, Kondo Y, Aoki K. Quantitative live-cell imaging of GPCR downstream signaling dynamics. Biochem J. 2022 Apr 29;4…
Paper Information
Tany R et. al. (2022), Biochem J 479(8), 883-900
doi:
10.1042/BCJ20220021
pmid:
35383830
Release
2022-04-18
Title
Raman imaging in HeLa cells treated with D-alkyne-tagged C18FAs
Organism
H. sapiens
Size
4.4 MB
Method Summary
Egoshi S, Dodo K, Ohgane K, Sodeoka M. Deuteration of terminal alkynes realizes simultaneous live cell Raman imaging of similar…
Paper Information
Egoshi S et. al. (2021), Org Biomol Chem 19(38), 8232-8236
doi:
10.1039/d1ob01479j
pmid:
34528645
Release
2022-03-09
Title
Raman imaging in WI-38/VA-13 cells treated with 100 µM all-D-GLA
Organism
H. sapiens
Size
4.7 MB
Method Summary
Dodo K, Sato A, Tamura Y, Egoshi S, Fujiwara K, Oonuma K, Nakao S, Terayama N, Sodeoka M. Synthesis of deuterated γ-linolenic a…
Paper Information
Dodo K et. al. (2021), Chem Commun (Camb) 57(17), 2180-2183
doi:
10.1039/d0cc07824g
pmid:
33527102
Release
2022-01-31
Title
Imaging data sets of ATDC5 cells and fetal growth plates
Organism
Mus musculus
Size
28.8 GB
Method Summary
See details in Hirota K, Hirashima T, Horikawa K, Yasoda A, Matsuda M. C-type natriuretic peptide-induced PKA activation promot…
Paper Information
Hirota K et. al. (2022), Endocrinology 163(3)
doi:
10.1210/endocr/bqac005
pmid:
35041746
Release
2021-11-29
Title
Imaging dataset for "Near-infrared imaging in fission yeast by genetically encoded biosynthesis of phycocyanobilin"
Organism
Schizosaccharomyces pombe, Saccharomyces cerevisiae, Homo Sapiens
Size
75.6 GB
Method Summary
See details in Sakai, et al. (2021), Journal of Cell Science
Paper Information
Sakai K et. al. (2021), J Cell Sci 134(24)
doi:
10.1242/jcs.259315
pmid:
34806750
Release
2021-11-25
Title
Swimming behaviors of C. elegans in various genetic background cultured in different food conditions; cultured with OP50, 1g/L glucose, or no nutrients (M9 buffer)
Organism
Caenorhabditis elegans
Size
48.6 GB
Method Summary
Arata Y, Shiga I, Ikeda Y, Jurica P, Kimura H, Kiyono K, Sako Y. Insulin signaling shapes fractal scaling of C. elegans behavio…
Paper Information
Arata Y et. al. (2022), Sci Rep 12(1), 10481
doi:
10.1038/s41598-022-13022-6
pmid:
35729173
Release
2021-11-09
Title
Imaging dataset for "Optogenetic relaxation of actomyosin contractility uncovers mechanistic roles of cortical tension during cytokinesis."
Organism
xenopus laevis, canis familiaris, mus musculus
Size
17.8 GB
Method Summary
See details in Yamamoto K, Miura H, Ishida M, Mii Y, Kinoshita N, Takada S, Ueno N, Sawai S, Kondo Y, Aoki K. Optogenetic relax…
Paper Information
Yamamoto K et. al. (2021), Nat Commun 12(1), 7145
doi:
10.1038/s41467-021-27458-3
pmid:
34880255
Release
2021-10-20
Title
Post-hoc Correction of Chromatic Aberrations in Large-scale Volumetric Images in Confocal Microscopy
Organism
Mus musculus
Size
236.2 GB
Method Summary
See also Leiwe MN, Fujimoto S and Imai T (2021) Post hoc Correction of Chromatic Aberrations in Large-Scale Volumetric Images i…
Paper Information
Leiwe MN et. al. (2021), Front Neuroanat 15, 760063
doi:
10.3389/fnana.2021.760063
pmid:
34955764
Release
2021-10-18
Title
Redundant and specific roles of EGFR ligands in the ERK activation waves during collective cell migration of MDCK cells
Organism
canis familiaris
Size
90.3 GB
Method Summary
See details in Lin S, Hirayama D, Maryu G, Matsuda K, Hino N, Deguchi E, Aoki K, Iwamoto R, Terai K, Matsuda M. Redundant roles…
Paper Information
Lin S et. al. (2022), Life Sci Alliance 5(1)
doi:
10.26508/lsa.202101206
pmid:
34667080
Release
2021-10-01
Title
Micro-topographical guidance of macropinocytic signaling patches
Organism
Dictyostelium discoideum
Size
6.4 GB
Method Summary
See details in Honda et. al. (2021) PNAS
Paper Information
Honda G et. al. (2021), Proc Natl Acad Sci U S A 118(50)
doi:
10.1073/pnas.2110281118
pmid:
34876521
Release
2021-09-30
Title
A set of imaging data related to the development of trans-scale scope and its application to biological study
Organism
Mouse, Canis Lupus Familiaris, Homo sapiens, Dictyostelium discoideum
Size
602.5 GB
Method Summary
Ichimura, T., Kakizuka, T., Horikawa, K. et al. Exploring rare cellular activity in more than one million cells by a transscale…
Paper Information
Ichimura T et. al. (2021), Sci Rep 11(1), 16539
doi:
10.1038/s41598-021-95930-7
pmid:
34400683
Ichimura, T. et. al. (2021/01/01), 2020.06.29.179044
doi:
10.1101/2020.06.29.179044
Release
2021-09-11
Title
See the paper titled “Metastatic tumor cells evade pulmonary NK cell-mediated killing by thrombin-mediated loss of CD155/PVR/Necl-5. ”
Organism
Mus musculus
Size
244.1 GB
Method Summary
Two photon microscopy, Lung intravital imaging, Bioluminescence imaging
Paper Information
Ichise H et. al. (2022), Elife 11
doi:
10.7554/eLife.76269
pmid:
35113018
Release
2021-07-01
Title
Two photon fluorescent images from hyBRET-AMPK and GO-ATeam2 retinal explants.
Organism
Mus musculus
Size
11.9 GB
Method Summary
Two photon microscopy, live ex vivo culture
Paper Information
He J et. al. (2021), FASEB J 35(9), e21880
doi:
10.1096/fj.202101121R
pmid:
34449091
Release
2021-06-09
Title
Live imaging data of developing hair follicles in an article “Tracing the origin of hair follicle stem cells” (Morita et al., 2021).
Organism
Mus musculus
Size
708.1 GB
Method Summary
See details in Morita, R., Sanzen, N., Sasaki, H. et al. Tracing the origin of hair follicle stem cells. Nature (2021).
Paper Information
Morita R et. al. (2021), Nature 594(7864), 547-552
doi:
10.1038/s41586-021-03638-5
pmid:
34108685
Release
2021-05-12
Title
Comparative mapping of crawling-cell morphodynamics in deep learning-based feature space
Organism
Homo sapiens, Unknown (fish keratocyte), Dictyostelium discoideum
Size
4.9 GB
Method Summary
Deep Learning based morphology analysis and phase-field morpho-dynamics simulation for a fast migrating cell
Paper Information
Imoto D et. al. (2021), PLoS Comput Biol 17(8), e1009237
doi:
10.1371/journal.pcbi.1009237
pmid:
34383753
Release
2021-05-11
Title
Mapping the molecular and structural specialization of the skin basement membrane for inter-tissue interactions
Organism
Mus musculus
Size
2.9 GB
Method Summary
See details in Tsutsui, K., Machida, H., Nakagawa, A. et al. Mapping the molecular and structural specialization of the skin ba…
Paper Information
Tsutsui K et. al. (2021), Nat Commun 12(1), 2577
doi:
10.1038/s41467-021-22881-y
pmid:
33972551
Release
2021-04-12
Title
Time-lapse images of ERK activity in embryonic murine trachea published in (2020, Yoshida et al., Front Cell Dev Biol)
Organism
Mus musculus
Size
62.2 GB
Method Summary
See details in 2020, Yoshida et al., Frontiers in Cell and Developmental Biology
Paper Information
Yoshida T et. al. (2020), Front Cell Dev Biol 8, 585640
doi:
10.3389/fcell.2020.585640
pmid:
33195234
Release
2021-03-29
Title
Imaging and other-related data of neurogenic tagging mouse lines.
Organism
Mus musculus (NCBI:txid10090)
Size
1.6 TB
Method Summary
See details in Hirata et al., NeuroGT: A brain atlas of neurogenic tagging CreER drivers for birthdate-based classification and…
Paper Information
Hirata T et. al. (2021), Cell Rep Methods 1(3), 100012
doi:
10.1016/j.crmeth.2021.100012
pmid:
35474959
Release
2021-02-17
Title
Imaging data of the oocytes in C. elegans adults
Organism
C. elegans
Size
43.0 MB
Method Summary
See details in Imakubo et al. (2021) BMC Bioinformatics 22(1):73.
Paper Information
Imakubo M et. al. (2021), BMC Bioinformatics 22(1), 73
doi:
10.1186/s12859-021-03990-3
pmid:
33596821
Release
2020-10-30
Title
Sets of image data of mouse mitral cells genetically labeled with utero electroporation.
Organism
Mus musculus
Size
162.2 GB
Method Summary
See detail in Aihara S, Fujimoto S, Sakaguchi R, Imai T. BMPR-2 gates activity-dependent stabilization of primary dendrites dur…
Paper Information
Aihara S et. al. (2021), Cell Rep 35(12), 109276
doi:
10.1016/j.celrep.2021.109276
pmid:
34161760
Release
2020-07-23
Title
Bidirectional Wnt signaling between endoderm and mesoderm confers tracheal identity in mouse and human cells
Organism
Mus Musculus, Homo sapiens
Size
6.9 GB
Method Summary
"Methods
Mice
All mouse experiments were approved by the Institutional Animal Care and Use Committee of RIKEN Kobe Branch. Mi…
Paper Information
Kishimoto K et. al. (2020), Nat Commun 11(1), 4159
doi:
10.1038/s41467-020-17969-w
pmid:
32855415
Release
2020-07-22
Title
Time-lapse images of ERK activity in MDCK cells published in (2020, Boocock et al., Nat Phys)
Organism
Canis lupus familiaris
Size
48.8 GB
Method Summary
See detail in Boocock et al. (2021) Nature Physics 17, 267-274
Paper Information
Boocock, Daniel et. al. (2021), Nature Physics 17(2), 267-274
doi:
10.1038/s41567-020-01037-7
Release
2020-07-09
Title
A set of calcium imaging data in the olfactory system of M. musculus adult
Organism
Mus musculus
Size
33.0 GB
Method Summary
See details in Inagaki et al. (2020) Cell Rep., 31(13): 107814.
Paper Information
Inagaki S et. al. (2020), Cell Rep 31(13), 107814
doi:
10.1016/j.celrep.2020.107814
pmid:
32610120
Release
2020-06-23
Title
Raw data of an article “Multiple types of navigational information are diffusely and independently encoded in the population activities of the dentate gyrus neurons” (Murano et al., 2020)
Organism
Mus musculus
Size
4.9 TB
Method Summary
See details in Murano T, Nakajima R, Nakao A, Hirata N, Amemori S, Murakami A, Kamitani Y, Yamamoto J, Miyakawa T. Multiple typ…
Paper Information
Murano T et. al. (2022), Proc Natl Acad Sci U S A 119(32), e2106830119
doi:
10.1073/pnas.2106830119
pmid:
35930667
Murano, Tomoyuki et. al. (2020/01/01), 2020.06.09.141572
doi:
10.1101/2020.06.09.141572
Release
2019-06-17
Title
A set of RNA-FISH and immunofluorescence images of Xist/Tsix expression during peri-implantation embryoic development using whole-mount 3D RNA-FISH
Organism
M. musculus
Size
7.0 GB
Method Summary
See details in Shiura et al. (2019) Scientific Reports, 9(1): 3637.
Paper Information
Shiura H and Abe K (2019), Sci Rep 9(1), 3637
doi:
10.1038/s41598-019-38807-0
pmid:
30842444
Release
2019-06-13
Title
Time-lapse 3D imaging data of cell nuclei
Organism
Caenorhabditis elegans, Homo sapiens
Size
3.1 GB
Method Summary
See details in Wen et al. (2021) eLife 2021;10:e59187 DOI: 10.7554/eLife.59187
Paper Information
Wen C et. al. (2021), Elife 10
doi:
10.7554/eLife.59187
pmid:
33781383
Release
2019-04-19
Title
A set of time-lapse imaging data of the C. elegans adults during swimming
Organism
C. elegans
Size
17.6 GB
Method Summary
Long-term video recording, Microfluidic device
Paper Information
Ikeda Y et. al. (2020), Sci Rep 10(1), 14775
doi:
10.1038/s41598-020-70319-0
pmid:
32901071
Release
2019-03-26
Title
A set of transverse sections of teleost fish vertebral bodies
Organism
M. cinereus, S. melanostictus, K. punctatus, P. altivelis altivelis, L. setigerus, L. litulon, C. abei, Z. nebulosa, Z. faber, M. sagifue, C. saira, H. hilgendorfii, S. oblongus, S. zonatus, C. spinosus, A. hanedai, T. japonicus, P. major, S. japonica, H. typus, S. forsteni, S. pinguis, R. prometheoides, S. japonicus, T. orientalis, T. tonggol, P. olivaceus, H. dubius, M. uradoi, T. pardalis, T snyderi, T. stictonotus
Size
29.9 GB
Method Summary
See details in Sakashita et al. (2019) doi: 10.1002/jmor.20983
Paper Information
Sakashita M et. al. (2019), J Morphol 280(6), 778-795
doi:
10.1002/jmor.20983
pmid:
30945336
Release
2018-11-07
Title
A set of imaging data of neuronal circuits labeling with fluorescent proteins in M. musculus
Organism
M. musculus
Size
21.7 GB
Method Summary
See details in Sakaguchi et al., eLife
Paper Information
Sakaguchi R et. al. (2018), Elife 7
doi:
10.7554/eLife.40350
pmid:
30454553
Release
2017-11-14
Title
A set of calcium imaging data in the olfactory system of M. musculus adult
Organism
M. musculus
Size
30.9 GB
Method Summary
See details in Ryo Iwata, Hiroshi Kiyonari, Takeshi Imai (2017) Neuron, 96(5): 1139-1152.
Paper Information
Iwata R et. al. (2017), Neuron 96(5), 1139-1152.e7
doi:
10.1016/j.neuron.2017.11.008
pmid:
29216451
Release
2017-03-17
Title
A set of BDML file for digitized cellular dynamics of a C. elegans embryo
Organism
C. elegans
Size
76.1 MB
Method Summary
See details in Azuma and Onami (2017) BMC Bioinformatics 18, 307.
Paper Information
Azuma Y and Onami S (2017), BMC Bioinformatics 18(1), 307
doi:
10.1186/s12859-017-1717-6
pmid:
28629355
Release
2016-05-22
Title
A set of BDML files for quantitative information about neuronal nuclei in C. elegans adult
Organism
C. elegans
Size
67.8 MB
Method Summary
See details in Toyoshima et al. (2016) PLoS Computational Biology, 12(6): e1004970
Paper Information
Toyoshima Y et. al. (2016), PLoS Comput Biol 12(6), e1004970
doi:
10.1371/journal.pcbi.1004970
pmid:
27271939