Summary of 140-Hirata-MouseBrainSlice


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Title
Atlas of neuronal birthdate tagging mouse lines
Description
-
Release date
2022-04-15
Updated date
-
License
CC BY
Kind
Image data based on Experiment
Number of Datasets
84 ( Image datasets: 84, Quantitative data datasets: 0 )
Size of Datasets
1.6 TB ( Image datasets: 1.6 TB, Quantitative data datasets: 0 bytes )

Organism(s)
Mus musculus
Strain(s)
C57BL/6 Neurod1CreER(D1B); TaumGFP-nLacZ, C57BL/6 Neurog2CreER(G2A); TaumGFP-nLacZ, C57BL/6 Neurog1CreER(G1C); TaumGFP-nLacZ, C57BL/6 Neurod4CreER(D4A); TaumGFP-nLacZ
Reporter(s)
DAB, anti-GFP antibody, anti-beta-galactosidase antibody

Datatype
-
Molecular Function (MF)
-
Biological Process (BP)
nervous system development
Cellular Component (CC)
neuron projection, plasma membrane, cell body, nucleus
Biological Imaging Method
bright-field microscopy
X scale
1.0 micrometer/pixel
Y scale
1.0 micrometer/pixel
Z scale
20 micrometer/slice
T scale
-

Image Acquisition
Experiment type
-
Microscope type
-
Acquisition mode
-
Contrast method
-
Microscope model
-
Detector model
-
Objective model
-
Filter set
-

Related paper(s)

Tatsumi Hirata, Yukako Tohsato, Hiroya Itoga, Go Shioi, Hiroshi Kiyonari, Sanae Oka, Toshihiko Fujimori, Shuichi Onami (2021) NeuroGT: A brain atlas of neurogenic tagging CreER drivers for birthdate-based classification and manipulation of mouse neurons., Cell reports methods, Volume 1, Number 3, pp. 100012

Published in 2021 Jul 26 (Electronic publication in May 25, 2021, midnight )

(Abstract) Neuronal birthdate is one of the major determinants of neuronal phenotypes. However, most birthdating methods are retrospective in nature, allowing very little experimental access to the classified neuronal subsets. Here, we introduce four neurogenic tagging mouse lines, which can assign CreER-loxP recombination to neuron subsets that share the same differentiation timing in living animals and enable various experimental manipulations of the classified subsets. We constructed a brain atlas of the neurogenic tagging mouse lines (NeuroGT), which includes holistic image data of the loxP-recombined neurons and their processes across the entire brain that were tagged on each single day during the neurodevelopmental period. This image database, which is open to the public, offers investigators the opportunity to find specific neurogenic tagging driver lines and the stages of tagging appropriate for their own research purposes.

Contact
Tatsumi Hirata , National Institute of Genetics , Brain Function Laboratory
Contributors
Toshihiko Fujimori

Dataset List of 140-Hirata-MouseBrainSlice

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#
Dataset ID
Kind
Size
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Thumbnail Thumbnail for dataset D1BN_TM9.5_G
# 7589
Datast ID D1BN_TM9.5_G
Dataset Kind Image data
Dataset Size 19.1 GB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset D1BN_TM9.5_L
# 7590
Datast ID D1BN_TM9.5_L
Dataset Kind Image data
Dataset Size 15.1 GB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset D1BN_TM10.5_G
# 7591
Datast ID D1BN_TM10.5_G
Dataset Kind Image data
Dataset Size 16.6 GB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset D1BN_TM10.5_L
# 7592
Datast ID D1BN_TM10.5_L
Dataset Kind Image data
Dataset Size 15.6 GB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset D1BN_TM11.5_G
# 7593
Datast ID D1BN_TM11.5_G
Dataset Kind Image data
Dataset Size 18.0 GB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset D1BN_TM11.5_L
# 7594
Datast ID D1BN_TM11.5_L
Dataset Kind Image data
Dataset Size 16.9 GB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset D1BN_TM12.5_G
# 7595
Datast ID D1BN_TM12.5_G
Dataset Kind Image data
Dataset Size 21.0 GB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset D1BN_TM12.5_L
# 7596
Datast ID D1BN_TM12.5_L
Dataset Kind Image data
Dataset Size 20.7 GB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset D1BN_TM13.5_G
# 7597
Datast ID D1BN_TM13.5_G
Dataset Kind Image data
Dataset Size 17.5 GB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset D1BN_TM13.5_L
# 7598
Datast ID D1BN_TM13.5_L
Dataset Kind Image data
Dataset Size 15.4 GB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset D1BN_TM14.5_G
# 7599
Datast ID D1BN_TM14.5_G
Dataset Kind Image data
Dataset Size 18.3 GB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset D1BN_TM14.5_L
# 7600
Datast ID D1BN_TM14.5_L
Dataset Kind Image data
Dataset Size 18.1 GB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset D1BN_TM15.5_G
# 7601
Datast ID D1BN_TM15.5_G
Dataset Kind Image data
Dataset Size 18.3 GB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset D1BN_TM15.5_L
# 7602
Datast ID D1BN_TM15.5_L
Dataset Kind Image data
Dataset Size 17.0 GB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset D1BN_TM16.5_G
# 7603
Datast ID D1BN_TM16.5_G
Dataset Kind Image data
Dataset Size 23.0 GB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset D1BN_TM16.5_L
# 7604
Datast ID D1BN_TM16.5_L
Dataset Kind Image data
Dataset Size 21.1 GB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset D1BN_TM17.5_G
# 7605
Datast ID D1BN_TM17.5_G
Dataset Kind Image data
Dataset Size 22.6 GB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset D1BN_TM17.5_L
# 7606
Datast ID D1BN_TM17.5_L
Dataset Kind Image data
Dataset Size 21.1 GB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset D1BN_woTM_G
# 7607
Datast ID D1BN_woTM_G
Dataset Kind Image data
Dataset Size 21.7 GB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset D1BN_woTM_L
# 7608
Datast ID D1BN_woTM_L
Dataset Kind Image data
Dataset Size 21.0 GB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset D4AN_TM8.5_G
# 7609
Datast ID D4AN_TM8.5_G
Dataset Kind Image data
Dataset Size 22.3 GB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset D4AN_TM8.5_L
# 7610
Datast ID D4AN_TM8.5_L
Dataset Kind Image data
Dataset Size 20.5 GB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset D4AN_TM9.5_G
# 7611
Datast ID D4AN_TM9.5_G
Dataset Kind Image data
Dataset Size 24.4 GB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset D4AN_TM9.5_L
# 7612
Datast ID D4AN_TM9.5_L
Dataset Kind Image data
Dataset Size 18.4 GB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset D4AN_TM10.5_G
# 7613
Datast ID D4AN_TM10.5_G
Dataset Kind Image data
Dataset Size 18.9 GB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset D4AN_TM10.5_L
# 7614
Datast ID D4AN_TM10.5_L
Dataset Kind Image data
Dataset Size 16.3 GB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset D4AN_TM11.5_G
# 7615
Datast ID D4AN_TM11.5_G
Dataset Kind Image data
Dataset Size 22.0 GB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset D4AN_TM11.5_L
# 7616
Datast ID D4AN_TM11.5_L
Dataset Kind Image data
Dataset Size 17.9 GB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset D4AN_TM12.5_G
# 7617
Datast ID D4AN_TM12.5_G
Dataset Kind Image data
Dataset Size 19.9 GB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset D4AN_TM12.5_L
# 7618
Datast ID D4AN_TM12.5_L
Dataset Kind Image data
Dataset Size 18.0 GB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset D4AN_TM13.5_G
# 7619
Datast ID D4AN_TM13.5_G
Dataset Kind Image data
Dataset Size 24.9 GB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset D4AN_TM13.5_L
# 7620
Datast ID D4AN_TM13.5_L
Dataset Kind Image data
Dataset Size 25.2 GB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset D4AN_TM14.5_G
# 7621
Datast ID D4AN_TM14.5_G
Dataset Kind Image data
Dataset Size 17.3 GB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset D4AN_TM14.5_L
# 7622
Datast ID D4AN_TM14.5_L
Dataset Kind Image data
Dataset Size 16.0 GB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset D4AN_TM15.5_G
# 7623
Datast ID D4AN_TM15.5_G
Dataset Kind Image data
Dataset Size 16.5 GB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset D4AN_TM15.5_L
# 7624
Datast ID D4AN_TM15.5_L
Dataset Kind Image data
Dataset Size 14.9 GB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset D4AN_TM16.5_G
# 7625
Datast ID D4AN_TM16.5_G
Dataset Kind Image data
Dataset Size 22.7 GB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset D4AN_TM16.5_L
# 7626
Datast ID D4AN_TM16.5_L
Dataset Kind Image data
Dataset Size 22.4 GB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset D4AN_TM17.5_G
# 7627
Datast ID D4AN_TM17.5_G
Dataset Kind Image data
Dataset Size 16.1 GB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset D4AN_TM17.5_L
# 7628
Datast ID D4AN_TM17.5_L
Dataset Kind Image data
Dataset Size 15.4 GB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset D4AN_woTM_G
# 7629
Datast ID D4AN_woTM_G
Dataset Kind Image data
Dataset Size 22.7 GB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset D4AN_woTM_L
# 7630
Datast ID D4AN_woTM_L
Dataset Kind Image data
Dataset Size 21.6 GB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset G1CN_TM9.5_G
# 7631
Datast ID G1CN_TM9.5_G
Dataset Kind Image data
Dataset Size 21.0 GB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset G1CN_TM9.5_L
# 7632
Datast ID G1CN_TM9.5_L
Dataset Kind Image data
Dataset Size 20.3 GB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset G1CN_TM10.5_G
# 7633
Datast ID G1CN_TM10.5_G
Dataset Kind Image data
Dataset Size 24.2 GB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset G1CN_TM10.5_L
# 7634
Datast ID G1CN_TM10.5_L
Dataset Kind Image data
Dataset Size 20.4 GB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset G1CN_TM11.5_G
# 7635
Datast ID G1CN_TM11.5_G
Dataset Kind Image data
Dataset Size 15.2 GB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset G1CN_TM11.5_L
# 7636
Datast ID G1CN_TM11.5_L
Dataset Kind Image data
Dataset Size 13.8 GB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset G1CN_TM12.5_G
# 7637
Datast ID G1CN_TM12.5_G
Dataset Kind Image data
Dataset Size 15.6 GB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset G1CN_TM12.5_L
# 7638
Datast ID G1CN_TM12.5_L
Dataset Kind Image data
Dataset Size 14.2 GB
4D view
SSBD:OMERO
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