Summary of 119-Sakashita-FishVertebrae


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Title
A set of transverse sections of teleost fish vertebral bodies
Description
-
Release date
2019-11-20
Updated date
-
License
CC BY-NC-ND
Kind
Image data based on Experiment
Number of Datasets
141 ( Image datasets: 141, Quantitative data datasets: 0 )
Size of Datasets
140.1 GB ( Image datasets: 140.1 GB, Quantitative data datasets: 0 bytes )

Organism(s)
Takifugu snyderi, Histiopterus typus, Scarus forsteni, Rexea prometheoides, Acropoma hanedai, Muraenesox cinereus, Sebastes oblongus, Hippoglossoides dubius, Plecoglossus altivelis altivelis, Sebastes zonatus, Takifugu pardalis, Cololabis saira, Paralichthys olivaceus, Chelidonichthys spinosus, Zeus faber, Lophiomus setigerus, Thunnus tonggol, Takifugu stictonotus, Konosirus punctatus, Sillago japonica, Trachurus japonicus, Chaunax abei, Sardinops melanosticta, Thunnus orientalis, Helicolenus hilgendorfi, Lophius litulon, Macrorhamphosodes uradoi, Zenopsis nebulosus, Sphyraena pinguis, Pagrus major, Scomber japonicus, Macroramphosus sagifue

Datatype
vertebral bodies of teleost fish
Molecular Function (MF)
Biological Process (BP)
sclerotome development, trabecula formation
Cellular Component (CC)
-
Biological Imaging Method
-
XYZ Scale
-
T scale
-

Image Acquisition
Experiment type
Other
Microscope type
Other
Acquisition mode
Other
Contrast method
Other
Microscope model
SkyScan 1172
Detector model
-
Objective model
-
Filter set
-

Related paper(s)

Misaki Sakashita, Mao Sato, Shigeru Kondo (2019) Comparative morphological examination of vertebral bodies of teleost fish using high-resolution micro-CT scans., Journal of morphology, Volume 280, Number 6, pp. 778-795

Published in 2019 Jun (Electronic publication in April 4, 2019, midnight )

(Abstract) Vertebral bodies of teleost fish are formed by the sclerotomal bone covering the chordacentrum. The internal part of the sclerotomal bone is composed of an amphicoelous hourglass shaped autocentrum, which is common in most fish species. In contrast, the external shape of the sclerotomal bone varies extensively among species. There are multiple hypotheses regarding the composition and formation of the external structure. However, as they are based on studies of few extant or extinct species, their applicability to other species remains to be clarified. To understand the morphology, formation, and composition of vertebral bodies in teleosts, we performed a comparative analysis using micro-CT scans of 32 species from 10 orders of Teleostei and investigated the detailed morphology of the sclerotomal bone, especially its plate-like ridge and trabeculae. We discovered two structural characteristics that are shared among most of the examined species. One was the sheet-like trabeculae that extend radially from the center of the vertebral body with a constant thickness. The other was the presence of hollow spaces on the internal parts of the lateral ridge and trabeculae. The combination of different arrangements of sheet-like trabeculae and internal hollow spaces formed different shapes of the lateral structure of the vertebral body. The properties of these two characteristics suggest that the external part of the sclerotomal bone grows outward by deposition at the bone tip, and that, concurrently, bone absorption occurs in the internal part of the sclerotomal bone. The vertebral arches were also formed by the sheet-like trabeculae, indicating that both, the vertebral body and the arches, are formed by the same component. The micro-CT scanning data were uploaded to a public database so they can be used for future studies on fish vertebrae.
(MeSH Terms)

Contact
Misaki Sakashita, Shigeru Kondo , Osaka University , Graduate School of Frontier Biosciences , Laboratory of Pattern Formation
Contributors
Misaki Sakashita, Mao Sato, Shigeru Kondo

Dataset List of 119-Sakashita-FishVertebrae

Thumbnail
#
Dataset ID
Kind
Size
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Thumbnail Thumbnail for dataset Acropoma_hanedai_SL82mm
# 4695
Dataset Kind Image data
Dataset Size 2.3 GB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Acropoma_hanedai_SL82mm
# 4696
Dataset Kind Image data
Dataset Size 2.3 GB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Acropoma_hanedai_SL82mm
# 4697
Dataset Kind Image data
Dataset Size 2.3 GB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Chaunax_abei_SL178mm
# 4698
Dataset Kind Image data
Dataset Size 3.7 GB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Chaunax_abei_SL178mm
# 4699
Dataset Kind Image data
Dataset Size 3.7 GB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Chaunax_abei_SL178mm
# 4700
Dataset Kind Image data
Dataset Size 3.7 GB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Chaunax_abei_SL188mm
# 4701
Dataset Kind Image data
Dataset Size 2.6 GB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Chaunax_abei_SL188mm
# 4702
Dataset Kind Image data
Dataset Size 2.6 GB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Chaunax_abei_SL188mm
# 4703
Dataset Kind Image data
Dataset Size 2.6 GB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Chaunax_abei_SL209mm
# 4704
Dataset Kind Image data
Dataset Size 2.9 GB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Chaunax_abei_SL209mm
# 4705
Dataset Kind Image data
Dataset Size 2.9 GB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Chaunax_abei_SL209mm
# 4706
Dataset Kind Image data
Dataset Size 2.9 GB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Chelidonichthys_spinosus_SL223mm
# 4707
Dataset Kind Image data
Dataset Size 2.5 GB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Chelidonichthys_spinosus_SL223mm
# 4708
Dataset Kind Image data
Dataset Size 2.5 GB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Chelidonichthys_spinosus_SL223mm
# 4709
Dataset Kind Image data
Dataset Size 2.5 GB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Chelidonichthys_spinosus_SL237mm
# 4710
Dataset Kind Image data
Dataset Size 1.8 GB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Chelidonichthys_spinosus_SL237mm
# 4711
Dataset Kind Image data
Dataset Size 1.8 GB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Chelidonichthys_spinosus_SL237mm
# 4712
Dataset Kind Image data
Dataset Size 1.8 GB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Cololabis_saira_SL274mm
# 4713
Dataset Kind Image data
Dataset Size 3.0 GB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Cololabis_saira_SL274mm
# 4714
Dataset Kind Image data
Dataset Size 3.0 GB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Cololabis_saira_SL274mm
# 4715
Dataset Kind Image data
Dataset Size 3.0 GB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Cololabis_saira_SL281mm
# 4716
Dataset Kind Image data
Dataset Size 2.2 GB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Cololabis_saira_SL281mm
# 4717
Dataset Kind Image data
Dataset Size 2.2 GB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Cololabis_saira_SL281mm
# 4718
Dataset Kind Image data
Dataset Size 2.2 GB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Helicolenus_hilgendorfii_SL145mm
# 4719
Dataset Kind Image data
Dataset Size 3.3 GB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Helicolenus_hilgendorfii_SL145mm
# 4720
Dataset Kind Image data
Dataset Size 3.3 GB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Helicolenus_hilgendorfii_SL145mm
# 4721
Dataset Kind Image data
Dataset Size 3.3 GB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Helicolenus_hilgendorfii_SL177mm
# 4722
Dataset Kind Image data
Dataset Size 1.4 GB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Helicolenus_hilgendorfii_SL177mm
# 4723
Dataset Kind Image data
Dataset Size 1.4 GB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Helicolenus_hilgendorfii_SL177mm
# 4724
Dataset Kind Image data
Dataset Size 1.4 GB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Hippoglossoides_dubius_SLV150mm
# 4725
Dataset Kind Image data
Dataset Size 1.6 GB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Hippoglossoides_dubius_SLV150mm
# 4726
Dataset Kind Image data
Dataset Size 1.6 GB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Histiopterus_typus_SL80mm
# 4727
Dataset Kind Image data
Dataset Size 2.8 GB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Histiopterus_typus_SL80mm
# 4728
Dataset Kind Image data
Dataset Size 2.8 GB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset Histiopterus_typus_SL80mm
# 4729
Dataset Kind Image data
Dataset Size 2.8 GB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Konosirus_punctatus_SL127mm
# 4730
Dataset Kind Image data
Dataset Size 1.4 GB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Konosirus_punctatus_SL127mm
# 4731
Dataset Kind Image data
Dataset Size 1.4 GB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Konosirus_punctatus_SL127mm
# 4732
Dataset Kind Image data
Dataset Size 1.4 GB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Konosirus_punctatus_SL130mm
# 4733
Dataset Kind Image data
Dataset Size 1.3 GB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Konosirus_punctatus_SL130mm
# 4734
Dataset Kind Image data
Dataset Size 1.3 GB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Konosirus_punctatus_SL130mm
# 4735
Dataset Kind Image data
Dataset Size 1.3 GB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Konosirus_punctatus_SL131mm
# 4736
Dataset Kind Image data
Dataset Size 2.0 GB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset Konosirus_punctatus_SL131mm
# 4737
Dataset Kind Image data
Dataset Size 2.0 GB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset Konosirus_punctatus_SL131mm
# 4738
Dataset Kind Image data
Dataset Size 2.0 GB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset Konosirus_punctatus_SL135mm
# 4739
Dataset Kind Image data
Dataset Size 1.8 GB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Konosirus_punctatus_SL135mm
# 4740
Dataset Kind Image data
Dataset Size 1.8 GB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Konosirus_punctatus_SL135mm
# 4741
Dataset Kind Image data
Dataset Size 1.8 GB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Lophiomus_setigerus_SL285mm
# 4742
Dataset Kind Image data
Dataset Size 3.5 GB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Lophiomus_setigerus_SL285mm
# 4743
Dataset Kind Image data
Dataset Size 3.5 GB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset Lophiomus_setigerus_SL285mm
# 4744
Dataset Kind Image data
Dataset Size 3.5 GB
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SSBD:OMERO
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