Summary of 119-Sakashita-FishVertebrae

SSBD:database
SSBD:database URL

SSBD:repository
SSBD:repository URL

Title
A set of transverse sections of teleost fish vertebral bodies
Description
-
Relase date
2019-11-20
Updated date
-
License
CC BY-NC-ND
Kind
Image data based on Experiment
Number of Datasets
141 ( Image datasets: 141, Quantitative data datasets: 0 )
Size of Datasets
140.1 GB ( Image datasets: 140.1 GB, Quantitative data datasets: 0 bytes )

Organism(s)
K. punctatus, P. olivaceus, Z. nebulosa, P. major, C. abei, L. setigerus, H. typus, C. spinosus, R. prometheoides, A. hanedai, S. zonatus, S. pinguis, T. pardalis, T. japonicus, T. stictonotus, S. forsteni, C. saira, Z. faber, H. hilgendorfii, T. tonggol, S. oblongus, T. snyderi, S. japonica, M. uradoi, M. sagifue, S. melanostictus, L. litulon, H. dubius, P. altivelis altivelis, T. orientalis, M. cinereus, S. japonicus

Datatype
vertebral bodies of teleost fish
Molecular Function (MF)
Biological Process (BP)
sclerotome development, trabecula formation
Cellular Component (CC)
-
Biological Imaging Method
-
XYZ Scale
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T scale
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Image Acquisition
Experiment type
Other
Microscope type
Other
Acquisition mode
Other
Contrast method
Other
Microscope model
SkyScan 1172
Detector model
-
Objective model
-
Filter set
-

Related paper(s)

Misaki Sakashita, Mao Sato, Shigeru Kondo (2019) Comparative morphological examination of vertebral bodies of teleost fish using high-resolution micro-CT scans., Journal of morphology, Volume 280, Number 6, pp. 778-795

Published in 2019 Jun (Electronic publication in April 4, 2019, midnight )

(Abstract) Vertebral bodies of teleost fish are formed by the sclerotomal bone covering the chordacentrum. The internal part of the sclerotomal bone is composed of an amphicoelous hourglass shaped autocentrum, which is common in most fish species. In contrast, the external shape of the sclerotomal bone varies extensively among species. There are multiple hypotheses regarding the composition and formation of the external structure. However, as they are based on studies of few extant or extinct species, their applicability to other species remains to be clarified. To understand the morphology, formation, and composition of vertebral bodies in teleosts, we performed a comparative analysis using micro-CT scans of 32 species from 10 orders of Teleostei and investigated the detailed morphology of the sclerotomal bone, especially its plate-like ridge and trabeculae. We discovered two structural characteristics that are shared among most of the examined species. One was the sheet-like trabeculae that extend radially from the center of the vertebral body with a constant thickness. The other was the presence of hollow spaces on the internal parts of the lateral ridge and trabeculae. The combination of different arrangements of sheet-like trabeculae and internal hollow spaces formed different shapes of the lateral structure of the vertebral body. The properties of these two characteristics suggest that the external part of the sclerotomal bone grows outward by deposition at the bone tip, and that, concurrently, bone absorption occurs in the internal part of the sclerotomal bone. The vertebral arches were also formed by the sheet-like trabeculae, indicating that both, the vertebral body and the arches, are formed by the same component. The micro-CT scanning data were uploaded to a public database so they can be used for future studies on fish vertebrae.
(MeSH Terms)

Contact
Misaki Sakashita, Shigeru Kondo , Osaka University , Graduate School of Frontier Biosciences , Laboratory of Pattern Formation
Contributors
Misaki Sakashita, Mao Sato, Shigeru Kondo


Dataset List of 119-Sakashita-FishVertebrae

#
Dataset ID
Kind
Size
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# 4695
Dataset Kind Image data
Dataset Size 2.3 GB
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# 4696
Dataset Kind Image data
Dataset Size 2.3 GB
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# 4697
Dataset Kind Image data
Dataset Size 2.3 GB
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# 4698
Dataset Kind Image data
Dataset Size 3.7 GB
4D view
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# 4699
Dataset Kind Image data
Dataset Size 3.7 GB
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# 4700
Dataset Kind Image data
Dataset Size 3.7 GB
4D view
SSBD:OMERO
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# 4701
Dataset Kind Image data
Dataset Size 2.6 GB
4D view
SSBD:OMERO
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# 4702
Dataset Kind Image data
Dataset Size 2.6 GB
4D view
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# 4703
Dataset Kind Image data
Dataset Size 2.6 GB
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SSBD:OMERO
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# 4704
Dataset Kind Image data
Dataset Size 2.9 GB
4D view
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# 4705
Dataset Kind Image data
Dataset Size 2.9 GB
4D view
SSBD:OMERO
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# 4706
Dataset Kind Image data
Dataset Size 2.9 GB
4D view
SSBD:OMERO
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# 4707
Dataset Kind Image data
Dataset Size 2.5 GB
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SSBD:OMERO
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# 4708
Dataset Kind Image data
Dataset Size 2.5 GB
4D view
SSBD:OMERO
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# 4709
Dataset Kind Image data
Dataset Size 2.5 GB
4D view
SSBD:OMERO
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# 4710
Dataset Kind Image data
Dataset Size 1.8 GB
4D view
SSBD:OMERO
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# 4711
Dataset Kind Image data
Dataset Size 1.8 GB
4D view
SSBD:OMERO
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# 4712
Dataset Kind Image data
Dataset Size 1.8 GB
4D view
SSBD:OMERO
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# 4713
Dataset Kind Image data
Dataset Size 3.0 GB
4D view
SSBD:OMERO
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# 4714
Dataset Kind Image data
Dataset Size 3.0 GB
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SSBD:OMERO
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# 4715
Dataset Kind Image data
Dataset Size 3.0 GB
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SSBD:OMERO
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# 4716
Dataset Kind Image data
Dataset Size 2.2 GB
4D view
SSBD:OMERO
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# 4717
Dataset Kind Image data
Dataset Size 2.2 GB
4D view
SSBD:OMERO
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# 4718
Dataset Kind Image data
Dataset Size 2.2 GB
4D view
SSBD:OMERO
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# 4719
Dataset Kind Image data
Dataset Size 3.3 GB
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SSBD:OMERO
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# 4720
Dataset Kind Image data
Dataset Size 3.3 GB
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SSBD:OMERO
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# 4721
Dataset Kind Image data
Dataset Size 3.3 GB
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SSBD:OMERO
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# 4722
Dataset Kind Image data
Dataset Size 1.4 GB
4D view
SSBD:OMERO
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# 4723
Dataset Kind Image data
Dataset Size 1.4 GB
4D view
SSBD:OMERO
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# 4724
Dataset Kind Image data
Dataset Size 1.4 GB
4D view
SSBD:OMERO
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# 4725
Dataset Kind Image data
Dataset Size 1.6 GB
4D view
SSBD:OMERO
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# 4726
Dataset Kind Image data
Dataset Size 1.6 GB
4D view
SSBD:OMERO
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# 4727
Dataset Kind Image data
Dataset Size 2.8 GB
4D view
SSBD:OMERO
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# 4728
Dataset Kind Image data
Dataset Size 2.8 GB
4D view
SSBD:OMERO
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# 4729
Dataset Kind Image data
Dataset Size 2.8 GB
4D view
SSBD:OMERO
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# 4730
Dataset Kind Image data
Dataset Size 1.4 GB
4D view
SSBD:OMERO
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# 4731
Dataset Kind Image data
Dataset Size 1.4 GB
4D view
SSBD:OMERO
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# 4732
Dataset Kind Image data
Dataset Size 1.4 GB
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SSBD:OMERO
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# 4733
Dataset Kind Image data
Dataset Size 1.3 GB
4D view
SSBD:OMERO
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# 4734
Dataset Kind Image data
Dataset Size 1.3 GB
4D view
SSBD:OMERO
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# 4735
Dataset Kind Image data
Dataset Size 1.3 GB
4D view
SSBD:OMERO
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# 4736
Dataset Kind Image data
Dataset Size 2.0 GB
4D view
SSBD:OMERO
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# 4737
Dataset Kind Image data
Dataset Size 2.0 GB
4D view
SSBD:OMERO
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# 4738
Dataset Kind Image data
Dataset Size 2.0 GB
4D view
SSBD:OMERO
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# 4739
Dataset Kind Image data
Dataset Size 1.8 GB
4D view
SSBD:OMERO
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# 4740
Dataset Kind Image data
Dataset Size 1.8 GB
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SSBD:OMERO
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# 4741
Dataset Kind Image data
Dataset Size 1.8 GB
4D view
SSBD:OMERO
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# 4742
Dataset Kind Image data
Dataset Size 3.5 GB
4D view
SSBD:OMERO
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# 4743
Dataset Kind Image data
Dataset Size 3.5 GB
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SSBD:OMERO
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# 4744
Dataset Kind Image data
Dataset Size 3.5 GB
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SSBD:OMERO
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# 4745
Dataset Kind Image data
Dataset Size 3.4 GB
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SSBD:OMERO
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# 4746
Dataset Kind Image data
Dataset Size 3.4 GB
4D view
SSBD:OMERO
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# 4747
Dataset Kind Image data
Dataset Size 3.4 GB
4D view
SSBD:OMERO
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# 4748
Dataset Kind Image data
Dataset Size 5.8 GB
4D view
SSBD:OMERO
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# 4749
Dataset Kind Image data
Dataset Size 5.8 GB
4D view
SSBD:OMERO
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# 4750
Dataset Kind Image data
Dataset Size 5.8 GB
4D view
SSBD:OMERO
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# 4751
Dataset Kind Image data
Dataset Size 1.8 GB
4D view
SSBD:OMERO
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# 4752
Dataset Kind Image data
Dataset Size 1.8 GB
4D view
SSBD:OMERO
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# 4753
Dataset Kind Image data
Dataset Size 1.8 GB
4D view
SSBD:OMERO
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# 4754
Dataset Kind Image data
Dataset Size 2.4 GB
4D view
SSBD:OMERO
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# 4755
Dataset Kind Image data
Dataset Size 2.4 GB
4D view
SSBD:OMERO
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# 4756
Dataset Kind Image data
Dataset Size 2.4 GB
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# 4757
Dataset Kind Image data
Dataset Size 2.2 GB
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# 4758
Dataset Kind Image data
Dataset Size 2.2 GB
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# 4759
Dataset Kind Image data
Dataset Size 2.2 GB
4D view
SSBD:OMERO
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# 4760
Dataset Kind Image data
Dataset Size 1.6 GB
4D view
SSBD:OMERO
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# 4761
Dataset Kind Image data
Dataset Size 1.6 GB
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SSBD:OMERO
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# 4762
Dataset Kind Image data
Dataset Size 1.6 GB
4D view
SSBD:OMERO
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# 4763
Dataset Kind Image data
Dataset Size 2.0 GB
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SSBD:OMERO
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# 4764
Dataset Kind Image data
Dataset Size 2.0 GB
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SSBD:OMERO
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# 4765
Dataset Kind Image data
Dataset Size 2.0 GB
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# 4766
Dataset Kind Image data
Dataset Size 3.3 GB
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SSBD:OMERO
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# 4767
Dataset Kind Image data
Dataset Size 3.3 GB
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SSBD:OMERO
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# 4768
Dataset Kind Image data
Dataset Size 3.3 GB
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SSBD:OMERO
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# 4769
Dataset Kind Image data
Dataset Size 3.8 GB
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SSBD:OMERO
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# 4770
Dataset Kind Image data
Dataset Size 3.8 GB
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SSBD:OMERO
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# 4771
Dataset Kind Image data
Dataset Size 3.8 GB
4D view
SSBD:OMERO
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# 4772
Dataset Kind Image data
Dataset Size 3.6 GB
4D view
SSBD:OMERO
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# 4773
Dataset Kind Image data
Dataset Size 3.6 GB
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SSBD:OMERO
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# 4774
Dataset Kind Image data
Dataset Size 1.8 GB
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SSBD:OMERO
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# 4775
Dataset Kind Image data
Dataset Size 1.8 GB
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SSBD:OMERO
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# 4776
Dataset Kind Image data
Dataset Size 3.3 GB
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SSBD:OMERO
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# 4777
Dataset Kind Image data
Dataset Size 3.3 GB
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SSBD:OMERO
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# 4778
Dataset Kind Image data
Dataset Size 3.3 GB
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SSBD:OMERO
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# 4779
Dataset Kind Image data
Dataset Size 2.6 GB
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SSBD:OMERO
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# 4780
Dataset Kind Image data
Dataset Size 2.6 GB
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SSBD:OMERO
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# 4781
Dataset Kind Image data
Dataset Size 2.6 GB
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SSBD:OMERO
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# 4782
Dataset Kind Image data
Dataset Size 2.6 GB
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SSBD:OMERO
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# 4783
Dataset Kind Image data
Dataset Size 2.6 GB
4D view
SSBD:OMERO
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# 4784
Dataset Kind Image data
Dataset Size 2.6 GB
4D view
SSBD:OMERO
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# 4785
Dataset Kind Image data
Dataset Size 2.7 GB
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SSBD:OMERO
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# 4786
Dataset Kind Image data
Dataset Size 2.7 GB
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SSBD:OMERO
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# 4787
Dataset Kind Image data
Dataset Size 2.7 GB
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SSBD:OMERO
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# 4788
Dataset Kind Image data
Dataset Size 4.9 GB
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SSBD:OMERO
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# 4789
Dataset Kind Image data
Dataset Size 4.9 GB
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SSBD:OMERO
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# 4790
Dataset Kind Image data
Dataset Size 4.9 GB
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SSBD:OMERO
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# 4791
Dataset Kind Image data
Dataset Size 1.6 GB
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SSBD:OMERO
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# 4792
Dataset Kind Image data
Dataset Size 1.6 GB
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SSBD:OMERO
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# 4793
Dataset Kind Image data
Dataset Size 1.6 GB
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SSBD:OMERO
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# 4794
Dataset Kind Image data
Dataset Size 3.3 GB
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SSBD:OMERO
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# 4795
Dataset Kind Image data
Dataset Size 3.3 GB
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SSBD:OMERO
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# 4796
Dataset Kind Image data
Dataset Size 3.3 GB
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SSBD:OMERO
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# 4797
Dataset Kind Image data
Dataset Size 3.7 GB
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SSBD:OMERO
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# 4798
Dataset Kind Image data
Dataset Size 3.7 GB
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# 4799
Dataset Kind Image data
Dataset Size 3.7 GB
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# 4800
Dataset Kind Image data
Dataset Size 2.7 GB
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# 4801
Dataset Kind Image data
Dataset Size 2.7 GB
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# 4802
Dataset Kind Image data
Dataset Size 2.7 GB
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# 4803
Dataset Kind Image data
Dataset Size 2.1 GB
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# 4804
Dataset Kind Image data
Dataset Size 2.1 GB
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# 4805
Dataset Kind Image data
Dataset Size 2.1 GB
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# 4806
Dataset Kind Image data
Dataset Size 4.7 GB
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# 4807
Dataset Kind Image data
Dataset Size 4.7 GB
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# 4808
Dataset Kind Image data
Dataset Size 4.7 GB
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# 4809
Dataset Kind Image data
Dataset Size 3.9 GB
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# 4810
Dataset Kind Image data
Dataset Size 3.9 GB
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# 4811
Dataset Kind Image data
Dataset Size 2.5 GB
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# 4812
Dataset Kind Image data
Dataset Size 2.5 GB
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# 4813
Dataset Kind Image data
Dataset Size 2.5 GB
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SSBD:OMERO
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# 4814
Dataset Kind Image data
Dataset Size 2.4 GB
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SSBD:OMERO
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# 4815
Dataset Kind Image data
Dataset Size 2.4 GB
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# 4816
Dataset Kind Image data
Dataset Size 2.4 GB
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# 4817
Dataset Kind Image data
Dataset Size 3.7 GB
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# 4818
Dataset Kind Image data
Dataset Size 3.7 GB
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# 4819
Dataset Kind Image data
Dataset Size 3.7 GB
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# 4820
Dataset Kind Image data
Dataset Size 2.8 GB
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# 4821
Dataset Kind Image data
Dataset Size 2.8 GB
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# 4822
Dataset Kind Image data
Dataset Size 3.5 GB
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SSBD:OMERO
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# 4823
Dataset Kind Image data
Dataset Size 3.5 GB
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# 4824
Dataset Kind Image data
Dataset Size 3.5 GB
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# 4825
Dataset Kind Image data
Dataset Size 3.7 GB
4D view
SSBD:OMERO
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# 4826
Dataset Kind Image data
Dataset Size 3.7 GB
4D view
SSBD:OMERO
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# 4827
Dataset Kind Image data
Dataset Size 3.7 GB
4D view
SSBD:OMERO
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# 4828
Datast ID Zeus_faber_SL359mm
Dataset Kind Image data
Dataset Size 3.7 GB
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SSBD:OMERO
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# 4829
Datast ID Zeus_faber_SL359mm
Dataset Kind Image data
Dataset Size 3.7 GB
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SSBD:OMERO
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# 4830
Datast ID Zeus_faber_TL210mm
Dataset Kind Image data
Dataset Size 3.1 GB
4D view
SSBD:OMERO
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# 4831
Datast ID Zeus_faber_TL210mm
Dataset Kind Image data
Dataset Size 3.1 GB
4D view
SSBD:OMERO
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# 4832
Datast ID Zeus_faber_TL210mm
Dataset Kind Image data
Dataset Size 3.1 GB
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SSBD:OMERO
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# 4833
Datast ID Zeus_faber_TL300mm
Dataset Kind Image data
Dataset Size 4.9 GB
4D view
SSBD:OMERO
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# 4834
Datast ID Zeus_faber_TL300mm
Dataset Kind Image data
Dataset Size 4.9 GB
4D view
SSBD:OMERO
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# 4835
Datast ID Zeus_faber_TL300mm
Dataset Kind Image data
Dataset Size 4.9 GB
4D view
SSBD:OMERO
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