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2021-10-20
PMID: 34955764 / doi: 10.3389/fnana.2021.760063 / https://www.frontiersin.org/articles/10.3389/fnana.2021.760063/full
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repos 32072 files / 236.1 GB
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repository_v2
Title
Post-hoc Correction of Chromatic Aberrations in Large-scale Volumetric Images in Confocal Microscopy
Paper info
Marcus N Leiwe, Satoshi Fujimoto, Takeshi Imai (2021) Post hoc Correction of Chromatic Aberrations in Large-Scale Volumetric Images in Confocal Microscopy., Frontiers in neuroanatomy, Volume 15, pp. 760063
2021-10-18
PMID: 34667080 / doi: 10.26508/lsa.202101206 / https://www.life-science-alliance.org/content/5/1/e202101206
1
repos 278 files / 90.3 GB
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repository_v2
Title
Redundant and specific roles of EGFR ligands in the ERK activation waves during collective cell migration of MDCK cells
Paper info
Shuhao Lin, Daiki Hirayama, Gembu Maryu, Kimiya Matsuda, Naoya Hino, Eriko Deguchi, Kazuhiro Aoki, Ryo Iwamoto, Kenta Terai, Michiyuki Matsuda (2022) Redundant roles of EGFR ligands in the ERK activation waves during collective cell migration., Life science alliance, Volume 5, Number 1
2021-10-01
1
repos 155 files / 6.4 GB
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repository_v2
Title
Micro-topographical guidance of macropinocytic signaling patches
Paper info
Gen Honda, Nen Saito, Taihei Fujimori, Hidenori Hashimura, Mitsuru J Nakamura, Akihiko Nakajima, Satoshi Sawai (2021) Microtopographical guidance of macropinocytic signaling patches., Proceedings of the National Academy of Sciences of the United States of America, Volume 118, Number 50
2021-09-30
351
raw_image 67632 files / 720.8 GB
0
database_v2
Title
Timelapse images and BDML file for quantitative information about the centromeric dynamics during mouse oocytes meiosis
Paper info
Ding Y, et. al. (2018) Current Biology, 28(10): 1661-1669. / Ding Y, Kaido M, Llano E, Pendas A M, and Kitajima Tomoya S (2018) The Post-anaphase SUMO Pathway Ensures the Maintenance of Centromeric Cohesion through Meiosis I-II Transition in Mammalian Oocytes. Current Biology, Volume 28, Issue 10, pages 1661-1669.
2021-09-30
46
raw_image 16502 files / 69.8 GB
0
database_v2
Title
Time lapse images and quantitative data of cell morphologic analysis in NuCyM transgenic mouse
Paper info
Imanishi A, et. al. (2018) Cell Struct. Funct., 43(2): 129-140. / Imanishi A, Murata T, Sato M, Hotta K, Imayoshi I, Matsuda M, , and Terai K (2018) A Novel Morphological Marker for the Analysis of Molecular Activities at the Single-cell Level. Cell Structure and Function, Volume 43, Issue2, pages 129-140.
2021-09-30
143
raw_image 310153 files / 26.4 GB
0
database_v2
Title
Live-Cell FRET images and BDML quantitative information about extracellular signal-regulated kinase activity dynamics in thymocyte motility
Paper info
Konishi Y, et. al. (2018) iScience, 10: 98-113. / Konishi Y, Terai K, Furuta Y, Kiyonari H, Abe T, Ueda Y, Kinashi T, Hamazaki Y, Takaori-Kondo A, and Matsuda M (2018) Live-Cell FRET Imaging Reveals a Role of Extracellular Signal-Regulated Kinase Activity Dynamics in Thymocyte Motility. iScience, Volume 10, pages 98-113.
2021-09-30
470
raw_image 180678 files / 62.5 GB
0
database_v2
Title
Fluorescence images and BDML file for quantitative information about mouse intestinal epithelial cells (IECs) extracellular signal-regulated kinase (ERK) activity dynamics
Paper info
Muta Y, et. al. (2018) Nat. Commun., 9(1): 2174. / Muta Y, Fujita Y, Sumiyama K, Sakurai A, Taketo M. M, Chiba T, Seno H, Aoki K, Matsuda M, and Imajo M (2018) Composite regulation of ERK activity dynamics underlying tumour-specific traits in the intestine. nature communications, Volume 9, Issue 1, pages 2174.
2021-09-30
13
raw_image 6556 files / 6.4 GB
0
database_v2
Title
Timelapse images and BDML file for quantitative information about the extracellular signal-regulated kinase (ERK) biosensor activity in HeLa cells, or 4T1 cancer cells or the transgenic mice
Paper info
Komatsu N, et. al. (2018) Scientific Reports, 8(1): 8984. / Komatsu N, Terai K, Imanishi A, Kamioka Y, Sumiyama K, Jin T, Okada Y, Nagai T, and Matsuda M (2018) A platform of BRET-FRET hybrid biosensors for optogenetics, chemical screening, and in vivo imaging. scientific reports, Volume 8, Issue 1, pages 8984.
2021-09-30
26
raw_image 26 files / 4.5 GB
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database_v2
Title
Timelapse FRET images data and BDML file for quantitative data about the cell migration in epidermis or urothelial of transgenic mice
Paper info
Sano T, et. al. (2018) The American J. of Pathol., 188(11): 2564-2573. / Sano T, Kobayashi T, Ogawa O, and Matsuda M (2018) Gliding Basal Cell Migration of the Urothelium during Wound Healing. The American Journal of Pathology, Volume 188, Issue 11, pages 2564-2573.
2021-09-30
4
raw_image 4 files / 6.4 MB
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database_v2
Title
Electron microimage of mitochondrial structure in control and Pre3 KO mice MEFs.
Paper info
Tanaka H, et. al. (2019) J Cell Sci, 132(11):jcs224766. / Tanaka H, Okazaki T, Aoyama S, Yokota M, Koike M, Okada Y, Fujiki Y, and Gotoh Y (2019) Peroxisomes control mitochondrial dynamics and the mitochondrion-dependent apoptosis pathway. Journal of Cell Science, Volume 132, Issue 11, pages jcs224766.
2021-09-30
20
raw_image 20 files / 1.1 GB
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database_v2
Title
Live imaging data of ERK activity in the MDCK cyte or mouse ear epidermis before or after 2p excitation.
Paper info
Kinjo T, et. al. (2019) Nat Methods., 16(10):1029-1036. / Kinjo T, Terai K, Horita S, Nomura N, Sumiyama K, Togashi K, Iwata S, and Matsuda M (2019) FRET-assisted photoactivation of flavoproteins for in vivo two-photon optogenetics. Nature Methods, Volume 16, Issue 10, pages 1029-1036.
2021-09-30
5
raw_image 2018 files / 5.2 GB
4
raw_bdml 8 files / 5.4 MB
database_v2
Title
Time-lapse images and BDML file for quantiative information about tracking of Vascular endothelial cells (ECs) nuclei in branches.
Paper info
Takubo N, et. al. (2019) Sci Rep, 9(1):9304. / Takubo N, Yura F, Naemura K, Yoshida R, Tokunaga T, Tokihiro T, and Hiroki Kurihara H (2013) Cohesive and anisotropic vascular endothelial cell motility driving angiogenic morphogenesis. Scientific Reports, Volume 9, Issue 1, pages 9304.
2021-09-30
3
raw_image 347 files / 696.3 MB
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database_v2
Title
Hes1 expression dynamics in the wild-type, Hes1 type-1 and Hes1 type-2 mutant NPCs of mice.
Paper info
Ochi S, et. al. (2020) Development, 147(4):dev182204. / Ochi S, Imaizumi Y, Shimojo H, Miyachi H, and Kageyama R (2020) Oscillatory expression of Hes1 regulates cell proliferation and neuronal differentiation in the embryonic brain. Development, Volume 147, Issue 4, pages dev182204.
2021-09-30
265
raw_image 73141 files / 371.5 GB
0
database_v2
Title
Timelapse confocal images and BDML files for quantitative information about the kinetochore microtubule dynamics during mouse oocytes meiosis
Paper info
Yoshida S, et. al. (2015) Dev Cell., 33(5):589-602. / Yoshida S, Kaido M, and Kitajima Tomoya S (2015) Inherent Instability of Correct Kinetochore-Microtubule Attachments during Meiosis I in Oocytes. Developmental Cell, Volume 33, Issue 5, pages 589-602.
2021-09-30
351
raw_image 67632 files / 720.8 GB
0
database_v1
Title
Timelapse images and BDML file for quantitative information about the centromeric dynamics during mouse oocytes meiosis
Paper info
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2021-09-30
46
raw_image 16502 files / 69.8 GB
0
database_v1
Title
Time lapse images and quantitative data of cell morphologic analysis in NuCyM transgenic mouse
Paper info
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Title
Live-Cell FRET images and BDML quantitative information about extracellular signal-regulated kinase activity dynamics in thymocyte motility
Paper info
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Title
Fluorescence images and BDML file for quantitative information about mouse intestinal epithelial cells (IECs) extracellular signal-regulated kinase (ERK) activity dynamics
Paper info
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2021-09-30
13
raw_image 6556 files / 6.4 GB
0
database_v1
Title
Timelapse images and BDML file for quantitative information about the extracellular signal-regulated kinase (ERK) biosensor activity in HeLa cells, or 4T1 cancer cells or the transgenic mice
Paper info
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Title
Timelapse FRET images data and BDML file for quantitative data about the cell migration in epidermis or urothelial of transgenic mice
Paper info
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Title
Timelapse confocal images and BDML files for quantitative information about the kinetochore microtubule dynamics during mouse oocytes meiosis
Paper info
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2021-09-30
PMID: 34400683 / doi: 10.1038/s41598-021-95930-7 / https://www.nature.com/articles/s41598-021-95930-7 / doi: 10.1101/2020.06.29.179044
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repos 4257 files / 602.5 GB
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repository_v2
Title
A set of imaging data related to the development of trans-scale scope and its application to biological study
Paper info
T Ichimura, T Kakizuka, K Horikawa, K Seiriki, A Kasai, H Hashimoto, K Fujita, T M Watanabe, T Nagai (2021) Exploring rare cellular activity in more than one million cells by a transscale scope., Scientific reports, Volume 11, Number 1, pp. 16539 / Ichimura, T., Kakizuka, T., Horikawa, K., Seiriki, K., Kasai, A., Hashimoto, H., Fujita, K., Watanabe, T. M., Nagai, T. (2021/01/01), Exploring rare cellular activity in more than one million cells by a trans-scale-scope, bioRxiv, 2020.06.29.179044
2021-09-11
1
repos 1474803 files / 457.7 GB
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repository_v2
Title
See the paper titled “Metastatic tumor cells evade pulmonary NK cell-mediated killing by thrombin-mediated loss of CD155/PVR/Necl-5. ”
Paper info
Hiroshi Ichise, Shoko Tsukamoto, Tsuyoshi Hirashima, Yoshinobu Konishi, Choji Oki, Shinya Tsukiji, Satoshi Iwano, Atsushi Miyawaki, Kenta Sumiyama, Kenta Terai, Michiyuki Matsuda (2022) Functional visualization of NK cell-mediated killing of metastatic single tumor cells., eLife, Volume 11
2021-07-01
PMID: 34449091 / doi: 10.1096/fj.202101121r / https://faseb.onlinelibrary.wiley.com/doi/abs/10.1096/fj.202101121R
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repos 154 files / 11.9 GB
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repository_v2
Title
Two photon fluorescent images from hyBRET-AMPK and GO-ATeam2 retinal explants.
Paper info
Jiazhou He, Masamichi Yamamoto, Kenta Sumiyama, Yumi Konagaya, Kenta Terai, Michiyuki Matsuda, Shinya Sato (2021) Two-photon AMPK and ATP imaging reveals the bias between rods and cones in glycolysis utility., FASEB journal : official publication of the Federation of American Societies for Experimental Biology, Volume 35, Number 9, pp. e21880
2021-06-22
doi: 10.1101/2020.10.30.358861 / https://www.biorxiv.org/content/10.1101/2020.10.30.358861v1 / PMID: 34161760 / doi: 10.1016/j.celrep.2021.109276 / https://www.cell.com/cell-reports/fulltext/S2211-1247(21)00643-4
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repos 93 files / 162.2 GB
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repository_v2
Title
Sets of image data of mouse mitral cells genetically labeled with utero electroporation.
Paper info
Shuhei Aihara, Satoshi Fujimoto, Richi Sakaguchi, Takeshi Imai (2021) BMPR-2 gates activity-dependent stabilization of primary dendrites during mitral cell remodeling., Cell reports, Volume 35, Number 12, pp. 109276
2021-06-09
PMID: 34108685 / doi: 10.1038/s41586-021-03638-5 / https://www.nature.com/articles/s41586-021-03638-5
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repos 508953 files / 706.3 GB
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repository_v2
Title
Origin and induction process of hair follicle stem cells
Paper info
Ritsuko Morita, Noriko Sanzen, Hiroko Sasaki, Tetsutaro Hayashi, Mana Umeda, Mika Yoshimura, Takaki Yamamoto, Tatsuo Shibata, Takaya Abe, Hiroshi Kiyonari, Yasuhide Furuta, Itoshi Nikaido, Hironobu Fujiwara (2021) Tracing the origin of hair follicle stem cells., Nature, Volume 594, Number 7864, pp. 547-552
2021-05-26
1
repos 2769 files / 315 bytes
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repository_v2
Title
Trans-scale imaging and analysis of cAMP signal waves generated by developing social amoebae
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2021-05-12
1
repos 606094 files / 6 bytes
0
repository_v2
Title
Comparative mapping of crawling-cell morphodynamics in deep learning-based feature space
Paper info
Daisuke Imoto, Nen Saito, Akihiko Nakajima, Gen Honda, Motohiko Ishida, Toyoko Sugita, Sayaka Ishihara, Koko Katagiri, Chika Okimura, Yoshiaki Iwadate, Satoshi Sawai (2021) Comparative mapping of crawling-cell morphodynamics in deep learning-based feature space., PLoS computational biology, Volume 17, Number 8, pp. e1009237
2021-05-11
PMID: 33972551 / doi: 10.1038/s41467-021-22881-y / https://www.nature.com/articles/s41467-021-22881-y
1
repos 168 files / 2.9 GB
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repository_v2
Title
Mapping the molecular and structural specialization of the skin basement membrane for inter-tissue interactions
Paper info
Ko Tsutsui, Hiroki Machida, Asako Nakagawa, Kyungmin Ahn, Ritsuko Morita, Kiyotoshi Sekiguchi, Jeffrey H Miner, Hironobu Fujiwara (2021) Mapping the molecular and structural specialization of the skin basement membrane for inter-tissue interactions., Nature communications, Volume 12, Number 1, pp. 2577
2021-04-12
PMID: 33195234 / doi: 10.3389/fcell.2020.585640 / https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7642454/
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repos 326 files / 62.2 GB
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repository_v2
Title
Time-lapse images of ERK activity in embryonic murine trachea published in (2020, Yoshida et al., Front Cell Dev Biol)
Paper info
Takuya Yoshida, Michiyuki Matsuda, Tsuyoshi Hirashima (2020) Incoherent Feedforward Regulation via Sox9 and ERK Underpins Mouse Tracheal Cartilage Development., Frontiers in cell and developmental biology, Volume 8, pp. 585640
2021-03-29
PMID: 35474959 / doi: 10.1016/j.crmeth.2021.100012 / https://www.cell.com/cell-reports-methods/fulltext/S2667-2375(21)00012-6
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repos 2881 files / 3.3 TB
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repository_v2
Title
Imaging and other-related data of neurogenic tagging mouse lines.
Paper info
Tatsumi Hirata, Yukako Tohsato, Hiroya Itoga, Go Shioi, Hiroshi Kiyonari, Sanae Oka, Toshihiko Fujimori, Shuichi Onami (2021) NeuroGT: A brain atlas of neurogenic tagging CreER drivers for birthdate-based classification and manipulation of mouse neurons., Cell reports methods, Volume 1, Number 3, pp. 100012
2021-02-17
PMID: 33596821 / doi: 10.1186/s12859-021-03990-3 / https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-021-03990-3
1
repos 124 files / 58.7 MB
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repository_v2
Title
Imaging data of the oocytes in C. elegans adults
Paper info
Momoko Imakubo, Jun Takayama, Hatsumi Okada, Shuichi Onami (2021) Statistical image processing quantifies the changes in cytoplasmic texture associated with aging in Caenorhabditis elegans oocytes., BMC bioinformatics, Volume 22, Number 1, pp. 73
2020-12-23
55
raw_image 55 files / 1.1 GB
0
database_v2
Title
Fluorescence images of mouse embryonic stem cells derived salivary gland at different developmental stage
Paper info
Tanaka J, et. al. (2018) Nat Commun., 9(1):4216. / Tanaka J, Ogawa M, Hojo H, Kawashima Y, Mabuchi Y, Hata K, Nakamura S, Yasuhara R, Takamatsu K, Irié T, Fukada, T Sakai T, Inoue T, Nishimura R, Ohara O, Saito I, Ohba S, Tsuji T, and Mishima K (2018) Generation of orthotopically functional salivary gland from embryonic stem cells. nature communications, Volume 9, Issue 1, pages 4216.
2020-12-23
4
raw_image 4 files / 5.5 GB
4
raw_bdml 8 files / 125.5 KB
database_v2
Title
Image data and quantitative data of cell shape changes in the early stage of Drosophila ventral furrow formation
Paper info
See details in Wen et al. (2017) Biophys J, 112(12): 2683-2695. / Wen F, Wang Y, and Shibata T (2017) Epithelial Folding Driven by Apical or Basal-Lateral Modulation: Geometric Features, Mechanical Inference, and Boundary Effects, Volume 112, Issue 12, pages 2683-2695.
2020-12-23
18
raw_image 18 files / 145.4 MB
0
database_v2
Title
Immunostaining or timelapse images of observation of horizontal boundary cells (HBCs) at different somite stage in medaka embryo
Paper info
Abe K, et. al. (2019) Cell Rep., 27(3):928-939. / Kota Abe, Atsuko Shimada, Sayaka Tayama, Hotaka Nishikawa, Takuya Kaneko, Sachiko Tsuda, Akari Karaiwa, Takaaki Matsui, Tohru Ishitani, Hiroyuki Takeda (2019) Horizontal Boundary Cells, a Special Group of Somitic Cells, Play Crucial Roles in the Formation of Dorsoventral Compartments in Teleost Somite. Cell Reports, Volume 27, Issue Database issue 3, pages 928-939.
Title
Fluorescence images of mouse embryonic stem cells derived salivary gland at different developmental stage
Paper info
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2020-07-23
PMID: 32855415 / doi: 10.1038/s41467-020-17969-w / https://www.nature.com/articles/s41467-020-17969-w
1
repos 93 files / 6.9 GB
0
repository_v2
Title
Bidirectional Wnt signaling between endoderm and mesoderm confers tracheal identity in mouse and human cells
Paper info
Keishi Kishimoto, Kana T Furukawa, Agustin Luz-Madrigal, Akira Yamaoka, Chisa Matsuoka, Masanobu Habu, Cantas Alev, Aaron M Zorn, Mitsuru Morimoto (2020) Bidirectional Wnt signaling between endoderm and mesoderm confers tracheal identity in mouse and human cells., Nature communications, Volume 11, Number 1, pp. 4159
2020-07-22
1
repos 5544 files / 48.8 GB
0
repository_v2
Title
Time-lapse images of ERK activity in MDCK cells published in (2020, Boocock et al., Nat Phys)
Paper info
Boocock, Daniel, Hino, Naoya, Ruzickova, Natalia, Hirashima, Tsuyoshi, Hannezo, Edouard (2021) Theory of mechanochemical patterning and optimal migration in cell monolayers, Nature Physics, Volume 17, Number 2, 267-274
2020-07-09
1
repos 171067 files / 32.4 GB
0
repository_v2
Title
A set of calcium imaging data in the olfactory system of M. musculus adult
Paper info
Shigenori Inagaki, Ryo Iwata, Masakazu Iwamoto, Takeshi Imai (2020) Widespread Inhibition, Antagonism, and Synergy in Mouse Olfactory Sensory Neurons In Vivo., Cell reports, Volume 31, Number 13, pp. 107814
2020-06-23
doi: 10.1101/2020.06.09.141572 / https://www.biorxiv.org/content/10.1101/2020.06.09.141572v2 / PMID: 35930667 / doi: 10.1073/pnas.2106830119 / https://www.pnas.org/doi/full/10.1073/pnas.2106830119
1
repos 716 files / 4.9 TB
0
repository_v2
Title
Raw data of an article “Multiple types of navigational information are diffusely and independently encoded in the population activities of the dentate gyrus neurons” (Murano et al., 2020)
Paper info
Murano, Tomoyuki, Nakajima, Ryuichi, Nakao, Akito, Hirata, Nao, Amemori, Satoko, Murakami, Akira, Kamitani, Yukiyasu, Yamamoto, Jun, Miyakawa, Tsuyoshi (2020/01/01), Multiple types of navigational information are independently encoded in the population activities of the dentate gyrus neurons, bioRxiv, 2020.06.09.141572 / Tomoyuki Murano, Ryuichi Nakajima, Akito Nakao, Nao Hirata, Satoko Amemori, Akira Murakami, Yukiyasu Kamitani, Jun Yamamoto, Tsuyoshi Miyakawa (2022) Multiple types of navigational information are independently encoded in the population activities of the dentate gyrus neurons., Proceedings of the National Academy of Sciences of the United States of America, Volume 119, Number 32, pp. e2106830119
Title
Time-lapse and micro-CT images of a split tooth germ in mouse
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Title
SEM images of natrual tooth or bio-hybrid implant tooth surface and periodontal tissue structure
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Title
Phase contrast images of natural and bioengineered salivary gland germs including the ED13.5 submandibular gland, the ED14.5 sublingual gland and the ED14.5 parotid gland on days 0,1,2,3 of organ cultures
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Title
Phase images of the development of natural and bioengineered lacrimal gland germ and harderian gland germ in time schedule
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Title
Immunocytochemistry images of ZIP10 (red) and E-cadherin (green) in skin from mouse embryos or postnatal day 2 (P2) mice.
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Title
CT images of tooth movement of the natural erupted tooth and bioengineered tooth
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Title
Immunofluorescence images of 46a IPS-RPE cells incubaed with the serum from the TLHM6 monkey in different stage
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Title
Fluorescein angiography images/optical coherence tomography images and micropermetry test of the transplanted eye after transplantation with iPS cell derived retinal pigment epithelium(RPE) sheet
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2019-11-20
30
raw_image 32 files / 15.7 GB
2
raw_bdml 4 files / 12.3 MB
database_v1
Title
Time-lapse and fluorescent images of collectice dynamics of neural progenitor cells (NPCs)
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