150-Abe-SomiteDev

Project

Title
Immunostaining or timelapse images of observation of horizontal boundary cells (HBCs) at different somite stage in medaka embryo
Description
License
CC BY
Released at
Dec. 23, 2020, midnight
Updated at
Funding
# of image datasets
18

Papers

Papers
Paper information: Kota Abe, Atsuko Shimada, Sayaka Tayama, Hotaka Nishikawa, Takuya Kaneko, Sachiko Tsuda, Akari Karaiwa, Takaaki Matsui, Tohru Ishitani, Hiroyuki Takeda (2019) Horizontal Boundary Cells, a Special Group of Somitic Cells, Play Crucial Roles in the Formation of Dorsoventral Compartments in Teleost Somite., Cell reports, Volume 27, Number 3, pp. 928-939.e4,
Pubmed ID: 30995487,
DOI: https://doi.org/10.1016/j.celrep.2019.03.068,

Contacts

Contacts
Hiroyuki Takeda (Contact) , Department of Biological Sciences , Graduate School of Science
NA (Image dataset contributor)

Biosamples

Organisms
Oryzias (NCBI:txid8089)
Strains
Medaka: Tg(eng2a:mCherry)
Medaka:Tg(Zic1:GFP/Zic4:DsRed)
Medaka: Tg(b-actin:DsRed
Cells
Cell lines

Anatomical information

UBERON
Anatomical entities

Gene ontology

GO: Biological processes
somite development (GO:0061053)
GO: Cellular components
antibody (GO:0019814)
dendritic shaft (GO:0043198)
GO: Molecular functions

Molecular biological information

Gene names
Protein names
Genetic methods
Protein tags
Probes
Oligo Primer
Genotype

Reagent or Compound

Reagent or Compound
Concentration
Fold Dilution

Imaging information

Dimensions
X scales
0.8302658 micrometer/pixel, 0.4151329 micrometer/pixel, 0.0033333 inch/pixel, 0.3095876 micrometer/pixel, NA, 0.6918882 micrometer/pixel,
Y scales
0.8302658 micrometer/pixel, 0.4151329 micrometer/pixel, 0.0033333 inch/pixel, 0.3095876 micrometer/pixel, NA, 0.6918882 micrometer/pixel,
Z scales
1.8594732 micrometer/slice, 1 micrometer/pixel, 1.082 micrometer/pixel, 1 micrometer/slice, NA,
T scales
NA,
Channels
,

Biological Imaging Methods Ontology

Microscopy types
Detection methods
Visualization methods
Illumination methods
Sources of contrast
Contrast enhancing methods
Resolution enhancing methods
Imaged parameters
Sample preparation methods

Instruments

Datasets

Dataset name
Organism
Gene / Protein
Dimensions
File size
SSBD:OMERO
Download
Oryzias (NCBI:txid8089)
27647160
zip
Oryzias (NCBI:txid8089)
9861083
zip
Oryzias (NCBI:txid8089)
33585000
zip
Oryzias (NCBI:txid8089)
1168216
zip
Oryzias (NCBI:txid8089)
1281832
zip
Oryzias (NCBI:txid8089)
4124113
zip
Oryzias (NCBI:txid8089)
4124117
zip
Oryzias (NCBI:txid8089)
4124117
zip
Oryzias (NCBI:txid8089)
4195821
zip
Oryzias (NCBI:txid8089)
4195823
zip
Oryzias (NCBI:txid8089)
4195823
zip
Oryzias (NCBI:txid8089)
4195821
zip
Oryzias (NCBI:txid8089)
8294740
zip
Oryzias (NCBI:txid8089)
8294740
zip
Oryzias (NCBI:txid8089)
8294740
zip
Oryzias (NCBI:txid8089)
8294736
zip
Oryzias (NCBI:txid8089)
8294736
zip
Oryzias (NCBI:txid8089)
8294736
zip