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150-Abe-SomiteDev
Author reviewed
Immunostaining or timelapse images of observation of horizontal boundary cells (HBCs) at different somite stage in medaka embryo
SSBD:OMERO.gallery
SSBD:OMERO
SSBD:downloads
Project ID
150-Abe-SomiteDev
Title
Immunostaining or timelapse images of observation of horizontal boundary cells (HBCs) at different somite stage in medaka embryo
Description
-
Release Date
2020-12-23
Update Date
-
License
CC BY
Version
1.0.0
Method Summary
See details in Abe K, et. al. (2019) Cell Rep., 27(3):928-939.
Paper DOI
https://doi.org/10.1016/j.celrep.2019.03.068
Paper URL
https://www.ncbi.nlm.nih.gov/pubmed/30995487
Kind
Image data
Organism
Oryzias
(
NCBITaxon:8089
)
Strain
Medaka:Tg(Zic1:GFP/Zic4:DsRed)
Medaka: Tg(b-actin:DsRed
Medaka: Tg (
eng2a:mCherry
)
Cell line
-
Biological Process
somite development (
GO:0061053
)
Cellular Component
antibody (
GO:0019814
)
dendritic shaft (
GO:0043198
)
Medical Subject Headings
Animals (
MeSH:D000818
)
Animals
Genetically Modified/metabolism (
MeSH:Q000378
)
Body Patterning (
MeSH:D019521
)
Body Patterning/genetics (
MeSH:Q000235
)
Cell Differentiation (
MeSH:D002454
)
Fish Proteins (
MeSH:D029941
)
Fish Proteins/metabolism (
MeSH:Q000378
)
Oryzias (
MeSH:D009990
)
Oryzias/metabolism (
MeSH:Q000378
)
Somites (
MeSH:D019170
)
Somites/cytology (
MeSH:Q000166
)
Somites/metabolism (
MeSH:Q000378
)
Method involved in biological imaging
confocal microscopy (
FBbi:00000251
)
antibody (
FBbi:00000401
)
time lapse microscopy (
FBbi:00000249
)
transmission electron microscopy (
FBbi:00000258
)
fluorescence microscopy (
FBbi:00000246
)
Image datasets
18
Quantitative datasets
0
Paper DOI / Paper URL
PMID: 30995487
,
doi: 10.1016/j.celrep.2019.03.068
OMERO.gallery
https://ssbd.riken.jp/omero/gallery/show_project/603/
OMERO
https://ssbd.riken.jp/omero/webclient/?show=project-603
downloads
https://ssbd.riken.jp/data/150-Abe-SomiteDev/
People
Contact
Hiroyuki Takeda
Graduate School of Science, University of Tokyo
Department of Biological Sciences
-
7-3-1 Hongo, Bunkyo-ku, Tokyo 113-0033, Japan
Imaging dataset contributor
-
Quantitative dataset contributor
-
Datasets
Thumbnail
Dataset
Organism
Kind / Links
Figure1B_somite_lateral
Oryzias
(
NCBITaxon:8089
)
Image data
omero.gallery
omero
Immunostaining image of Tg(zic1:GFP) at the 34 somite stage in medaka embryo
Figure1G_HBCs_zic1
Oryzias
(
NCBITaxon:8089
)
Image data
omero.gallery
omero
Immunostaining image of emergence of horizontal boundary cells (HBCs) at the 24 somite stage in medaka embryo
Figure1HIJK_somite_optical
Oryzias
(
NCBITaxon:8089
)
Image data
omero.gallery
omero
Immunostaining image of parasagittal optical section of the somite of Tg(zic1:GFP) embryo at 24 somite stage in medaka embryo
Figure2B_dorsal_16ss
Oryzias
(
NCBITaxon:8089
)
Image data
omero.gallery
omero
Immunostaining image of transplanted cells Tg(b-actin:DsRed) into a Tg(zic1:GFP) host medaka embryo originally located at 16 somite stage
Figure2C_dorsal_24ss
Oryzias
(
NCBITaxon:8089
)
Image data
omero.gallery
omero
Immunostaining image of transplanted cells Tg(b-actin:DsRed) into a Tg(zic1:GFP) host medaka embryo originally located at 24 somite stage and differentiated into HBCs
FigureS1B_Tg_zic1_0min
Oryzias
(
NCBITaxon:8089
)
Image data
omero.gallery
omero
Time-lapse image of Tg(zic1:GFP) at 24 somite stage observed in medaka embryo at 0min
FigureS1B_Tg_zic1_160min
Oryzias
(
NCBITaxon:8089
)
Image data
omero.gallery
omero
Time-lapse image of Tg(zic1:GFP) at 24 somite stage observed in medaka embryo at 160min
FigureS1B_Tg_zic1_200min
Oryzias
(
NCBITaxon:8089
)
Image data
omero.gallery
omero
Time-lapse image of Tg(zic1:GFP) at 24 somite stage observed in medaka embryo at 200min
FigureS2B_trunk_4days
Oryzias
(
NCBITaxon:8089
)
Image data
omero.gallery
omero
Transmission electron microscopy image of the vertical section around the trunk region at 4 days post-fertilization (dpf)
FigureS2C_trunk_4days_magnified1
Oryzias
(
NCBITaxon:8089
)
Image data
omero.gallery
omero
Transmission electron microscopy image of the vertical section around the trunk region at 4 days post-fertilization (dpf)
FigureS2C_trunk_4days_magnified2
Oryzias
(
NCBITaxon:8089
)
Image data
omero.gallery
omero
Transmission electron microscopy image of the vertical section around the trunk region at 4 days post-fertilization (dpf)
FigureS2D_trunk_4days_magnified
Oryzias
(
NCBITaxon:8089
)
Image data
omero.gallery
omero
Transmission electron microscopy image of the vertical section around the trunk region at 4 days post-fertilization (dpf)
FigureS3K_control_30ss
Oryzias
(
NCBITaxon:8089
)
Image data
omero.gallery
omero
Time-lapse analysis of zic1-expressing-cell expansion at 30 somite stage in medaka Tg(zic1:GFP) embryo
FigureS3K_control_35ss
Oryzias
(
NCBITaxon:8089
)
Image data
omero.gallery
omero
Time-lapse analysis of zic1-expressing-cell expansion at 35 somite stage in medaka Tg(zic1:GFP) embryo
FigureS3K_control_5dpf
Oryzias
(
NCBITaxon:8089
)
Image data
omero.gallery
omero
Time-lapse analysis of zic1-expressing-cell expansion at 5 days post-fertilization (dpf) in medaka Tg(zic1:GFP) embryo
FigureS3K_cyc_30ss
Oryzias
(
NCBITaxon:8089
)
Image data
omero.gallery
omero
Time-lapse analysis of zic1-expressing-cell expansion at 30 somite stage in the cyclopamine-treated medaka Tg(zic1:GFP) embryos
FigureS3K_cyc_35ss
Oryzias
(
NCBITaxon:8089
)
Image data
omero.gallery
omero
Time-lapse analysis of zic1-expressing-cell expansion at 35 somite stage in the cyclopamine-treated medaka Tg(zic1:GFP) embryos
FigureS3K_cyc_5dpf
Oryzias
(
NCBITaxon:8089
)
Image data
omero.gallery
omero
Time-lapse analysis of zic1-expressing-cell expansion at 5 days post-fertilization (dpf) in the cyclopamine-treated medaka Tg(zic1:GFP) embryos