142-Wen-CellShape

Project

Title
Image data and quantitative data of cell shape changes in the early stage of Drosophila ventral furrow formation
Description
License
CC BY
Released at
Dec. 23, 2020, midnight
Updated at
Funding
# of image datasets
8

Papers

Papers
Paper information: Fu-Lai Wen, Yu-Chiun Wang, Tatsuo Shibata (2017) Epithelial Folding Driven by Apical or Basal-Lateral Modulation: Geometric Features, Mechanical Inference, and Boundary Effects., Biophysical journal, Volume 112, Number 12, pp. 2683-2695,
Pubmed ID: 28636924,
PMCID: 5479116,
DOI: https://doi.org/10.1016/j.bpj.2017.05.012,

Contacts

Contacts
Tatsuo Shibata (Contact) , Center for Biosystems Dynamics Research , RIKEN
Fu-Lai Wen (Contact) , Center for Biosystems Dynamics Research , RIKEN
NA (Image dataset contributor)

Biosamples

Organisms
Drosophila (NCBI:txid7215)
Strains
NA
Cells
Cell lines

NA

Anatomical information

UBERON
Anatomical entities

Gene ontology

GO: Biological processes
mesodermal cell migration (GO:0008078)
ventral furrow formation (GO:0007370)
GO: Cellular components
GO: Molecular functions

Molecular biological information

Gene names
Protein names
Genetic methods
Protein tags
Probes
Oligo Primer
Genotype

Reagent or Compound

Reagent or Compound
Concentration
Fold Dilution

Imaging information

Dimensions
X scales
0.0138889 centimeter/pixel,
Y scales
0.0138889 centimeter/pixel,
Z scales
1 centimeter/slice,
T scales
10 sec per time interval,
Channels
,

Biological Imaging Methods Ontology

Microscopy types
Detection methods
Visualization methods
Illumination methods
Sources of contrast
Contrast enhancing methods
Resolution enhancing methods
Imaged parameters
Sample preparation methods

Instruments

Datasets

Dataset name
Organism
Gene / Protein
Dimensions
File size
SSBD:OMERO
Download
Drosophila (NCBI:txid7215)
1258781767
zip
Drosophila (NCBI:txid7215)
2362302416
zip
Drosophila (NCBI:txid7215)
1258781768
zip
Drosophila (NCBI:txid7215)
1007028006
zip
Drosophila (NCBI:txid7215)
29600
zip
Drosophila (NCBI:txid7215)
29604
zip
Drosophila (NCBI:txid7215)
40140
zip
Drosophila (NCBI:txid7215)
29604
zip