Summary of 484-Inagaki-SeeDBLive
SSBD:OMERO.gallery Project
SSBD:OMERO Project
SSBD:downloads
Title
Images of organoids, brain slices and in the brains of mice using minimally invasive optical clearing media, SeeDB-Live
Description
Tissue clearing has been widely used for fluorescence imaging of fixed tissues, but its application to live tissues has been limited by toxicity. Here the authors develop minimally invasive optical clearing media for fluorescence imaging of live mammalian tissues. Light scattering is minimized by adding spherical polymers with low osmolarity to the extracellular medium. A clearing medium containing bovine serum albumin (SeeDB-Live) is compatible with live cells, enabling structural and functional imaging of live tissues, such as spheroids, organoids, acute brain slices and the mouse brains in vivo. SeeDB-Live minimally affects neuronal electrophysiological properties and sensory responses in vivo, and facilitates fluorescence imaging of deep cortical layers in live animals without detectable toxicity to neurons or behavior. They further demonstrate its utility to epifluorescence voltage imaging in acute brain slices and in vivo preparations. Thus, SeeDB-Live expands both the depth and modality range of fluorescence imaging in live mammalian tissues.
Kind
Image data
based on Experiment
Number of Datasets
83
( Image datasets: 83,
Quantitative data datasets: 0 )
Size of Datasets
30.8 GB
( Image datasets: 30.8 GB,
Quantitative data datasets: 0 bytes )
Biological Process (BP)
neuronal action potential propagation, calcium ion transport, calcium ion transport response to odorant, neuronal action potential propagation neuronal action potential back-propagation, response to odorant neuronal action potential propagation neuronal action potential back-propagation
Cellular Component (CC)
cell body, cytoplasm, cell body dendrite, dendrite
Biological Imaging Method
fluorescence microscopy, two-photon laser scanning microscopy, confocal microscopy
T scale
1.644 seconds, 0.405 seconds, 1.109 seconds, NA, 0.5 milliseconds, 0.169 seconds, 4 milliseconds, 8.8 milliseconds, 1 milliseconds, 1.115 seconds, 0.235 seconds, 1.110 seconds, 7 milliseconds
Image Acquisition
Experiment type
-
Microscope type
-
Acquisition mode
-
Contrast method
-
Microscope model
-
Detector model
-
Objective model
-
Filter set
-
Related paper(s)
Shigenori Inagaki, Nao Nakagawa-Tamagawa, Nathan Zechen Huynh, Yuki Kambe, Rei Yagasaki, Satoshi Manita, Satoshi Fujimoto, Takahiro Noda, Misato Mori, Aki Teranishi, Hikari Takeshima, Koki Ishikawa, Yuki Naitou, Tatsushi Yokoyama, Masayuki Sakamoto, Katsuhiko Hayashi, Kazuo Kitamura, Yoshiaki Tagawa, Satoru Okuda, Tatsuo K Sato, Takeshi Imai (2026) Isotonic and minimally invasive optical clearing media for live cell imaging ex vivo and in vivo., Nature methods
Published in March 12, 2026
(Electronic publication in March 12, 2026, midnight )
(Abstract) Tissue clearing has been widely used for fluorescence imaging of fixed tissues, but its application to live tissues has been limited by toxicity. Here we develop minimally invasive optical clearing media for fluorescence imaging of live mammalian tissues. Light scattering is minimized by adding spherical polymers with low osmolarity to the extracellular medium. A clearing medium containing bovine serum albumin (SeeDB-Live) is compatible with live cells, enabling structural and functional imaging of live tissues, such as spheroids, organoids, acute brain slices and the mouse brains in vivo. SeeDB-Live minimally affects neuronal electrophysiological properties and sensory responses in vivo, and facilitates fluorescence imaging of deep cortical layers in live animals without detectable toxicity to neurons or behavior. We further demonstrate its utility to epifluorescence voltage imaging in acute brain slices and in vivo preparations. Thus, SeeDB-Live expands both the depth and modality range of fluorescence imaging in live mammalian tissues.
Contact
Shigenori Inagaki, Takeshi Imai
, Kyushu University, Kyushu University
, Department of Developmental Neurophysiology, Department of Developmental Neurophysiology
, Department of Developmental Neurophysiology, Department of Developmental Neurophysiology
Dataset List of 484-Inagaki-SeeDBLive
Thumbnail
#
Dataset ID
Kind
Size
4D View
SSBD:OMERO
Download BDML
Download Images
Thumbnail
Dataset Kind
Image data
Dataset Size
64.6 MB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (51.4 MB)
Thumbnail
Dataset Kind
Image data
Dataset Size
34.2 MB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (19.8 MB)
Thumbnail
Dataset Kind
Image data
Dataset Size
33.7 MB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (18.0 MB)
Thumbnail
Dataset Kind
Image data
Dataset Size
42.2 MB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (20.8 MB)
Thumbnail
Dataset Kind
Image data
Dataset Size
42.2 MB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (21.5 MB)
Thumbnail
Dataset Kind
Image data
Dataset Size
42.2 MB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (23.7 MB)
Thumbnail
Dataset Kind
Image data
Dataset Size
32.7 MB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (19.6 MB)
Thumbnail
Dataset Kind
Image data
Dataset Size
33.7 MB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (19.9 MB)
Thumbnail
Dataset Kind
Image data
Dataset Size
50.7 MB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (25.6 MB)
Thumbnail
Dataset Kind
Image data
Dataset Size
50.7 MB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (27.0 MB)
Thumbnail
Dataset Kind
Image data
Dataset Size
42.2 MB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (24.1 MB)
Thumbnail
Dataset Kind
Image data
Dataset Size
46.7 MB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (28.8 MB)
Thumbnail
Dataset Kind
Image data
Dataset Size
47.7 MB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (28.5 MB)
Thumbnail
Dataset Kind
Image data
Dataset Size
50.7 MB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (29.0 MB)
Thumbnail
Dataset Kind
Image data
Dataset Size
50.7 MB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (29.6 MB)
Thumbnail
Dataset Kind
Image data
Dataset Size
50.7 MB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (30.5 MB)
Thumbnail
Dataset Kind
Image data
Dataset Size
48.2 MB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (31.1 MB)
Thumbnail
Dataset Kind
Image data
Dataset Size
58.7 MB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (36.3 MB)
Thumbnail
Dataset Kind
Image data
Dataset Size
50.7 MB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (32.1 MB)
Thumbnail
Dataset Kind
Image data
Dataset Size
50.7 MB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (31.6 MB)
Thumbnail
Dataset Kind
Image data
Dataset Size
50.7 MB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (31.7 MB)
Thumbnail
Dataset Kind
Image data
Dataset Size
90.2 MB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (72.2 MB)
Thumbnail
Dataset Kind
Image data
Dataset Size
90.2 MB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (70.5 MB)
Thumbnail
Dataset Kind
Image data
Dataset Size
90.2 MB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (71.7 MB)
Thumbnail
Dataset Kind
Image data
Dataset Size
90.2 MB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (68.9 MB)
Thumbnail
Dataset Kind
Image data
Dataset Size
90.2 MB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (69.1 MB)
Thumbnail
Dataset Kind
Image data
Dataset Size
90.2 MB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (68.5 MB)
Thumbnail
Dataset Kind
Image data
Dataset Size
90.2 MB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (68.1 MB)
Thumbnail
Dataset Kind
Image data
Dataset Size
90.2 MB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (68.2 MB)
Thumbnail
Dataset Kind
Image data
Dataset Size
90.2 MB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (65.8 MB)
Thumbnail
Dataset Kind
Image data
Dataset Size
90.2 MB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (65.4 MB)
Thumbnail
Dataset Kind
Image data
Dataset Size
90.2 MB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (67.2 MB)
Thumbnail
Dataset Kind
Image data
Dataset Size
90.2 MB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (67.1 MB)
Thumbnail
Dataset Kind
Image data
Dataset Size
90.2 MB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (72.2 MB)
Thumbnail
Dataset Kind
Image data
Dataset Size
90.2 MB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (70.8 MB)
Thumbnail
Dataset Kind
Image data
Dataset Size
90.2 MB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (71.7 MB)
Thumbnail
Dataset Kind
Image data
Dataset Size
168.7 MB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (122.9 MB)
Thumbnail
Dataset Kind
Image data
Dataset Size
166.2 MB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (118.8 MB)
Thumbnail
Dataset Kind
Image data
Dataset Size
168.7 MB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (118.9 MB)
Thumbnail
Dataset Kind
Image data
Dataset Size
170.7 MB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (124.1 MB)
Thumbnail
Dataset Kind
Image data
Dataset Size
168.7 MB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (121.9 MB)
Thumbnail
Dataset Kind
Image data
Dataset Size
203.3 MB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (149.7 MB)
Thumbnail
Dataset Kind
Image data
Dataset Size
4.5 GB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (3.2 GB)
Thumbnail
Dataset Kind
Image data
Dataset Size
500.4 MB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (337.4 MB)
Thumbnail
Dataset Kind
Image data
Dataset Size
4.5 GB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (3.2 GB)
Thumbnail
Dataset Kind
Image data
Dataset Size
15.9 MB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (11.1 MB)
Thumbnail
Dataset Kind
Image data
Dataset Size
16.0 MB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (12.2 MB)
Thumbnail
Dataset Kind
Image data
Dataset Size
116.6 MB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (29.4 MB)
Thumbnail
Dataset Kind
Image data
Dataset Size
116.6 MB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (45.9 MB)
Thumbnail
Dataset Kind
Image data
Dataset Size
116.6 MB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (29.4 MB)