Summary of 484-Inagaki-SeeDBLive


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Title
Images of organoids, brain slices and in the brains of mice using minimally invasive optical clearing media, SeeDB-Live
Description
Tissue clearing has been widely used for fluorescence imaging of fixed tissues, but its application to live tissues has been limited by toxicity. Here the authors develop minimally invasive optical clearing media for fluorescence imaging of live mammalian tissues. Light scattering is minimized by adding spherical polymers with low osmolarity to the extracellular medium. A clearing medium containing bovine serum albumin (SeeDB-Live) is compatible with live cells, enabling structural and functional imaging of live tissues, such as spheroids, organoids, acute brain slices and the mouse brains in vivo. SeeDB-Live minimally affects neuronal electrophysiological properties and sensory responses in vivo, and facilitates fluorescence imaging of deep cortical layers in live animals without detectable toxicity to neurons or behavior. They further demonstrate its utility to epifluorescence voltage imaging in acute brain slices and in vivo preparations. Thus, SeeDB-Live expands both the depth and modality range of fluorescence imaging in live mammalian tissues.
Release date
2026-08-19
Updated date
-
License
CC BY 4.0
Kind
Image data based on Experiment
Number of Datasets
83 ( Image datasets: 83, Quantitative data datasets: 0 )
Size of Datasets
30.8 GB ( Image datasets: 30.8 GB, Quantitative data datasets: 0 bytes )

Organism(s)
Mus musculus
Strain(s)
C57BL/6N

Datatype
-
Molecular Function (MF)
Biological Process (BP)
neuronal action potential propagation, calcium ion transport, calcium ion transport response to odorant, neuronal action potential propagation neuronal action potential back-propagation, response to odorant neuronal action potential propagation neuronal action potential back-propagation
Cellular Component (CC)
cell body, cytoplasm, cell body dendrite, dendrite
Biological Imaging Method
fluorescence microscopy, two-photon laser scanning microscopy, confocal microscopy
T scale
1.644 seconds, 0.405 seconds, 1.109 seconds, NA, 0.5 milliseconds, 0.169 seconds, 4 milliseconds, 8.8 milliseconds, 1 milliseconds, 1.115 seconds, 0.235 seconds, 1.110 seconds, 7 milliseconds

Image Acquisition
Experiment type
-
Microscope type
-
Acquisition mode
-
Contrast method
-
Microscope model
-
Detector model
-
Objective model
-
Filter set
-

Related paper(s)

Shigenori Inagaki, Nao Nakagawa-Tamagawa, Nathan Zechen Huynh, Yuki Kambe, Rei Yagasaki, Satoshi Manita, Satoshi Fujimoto, Takahiro Noda, Misato Mori, Aki Teranishi, Hikari Takeshima, Koki Ishikawa, Yuki Naitou, Tatsushi Yokoyama, Masayuki Sakamoto, Katsuhiko Hayashi, Kazuo Kitamura, Yoshiaki Tagawa, Satoru Okuda, Tatsuo K Sato, Takeshi Imai (2026) Isotonic and minimally invasive optical clearing media for live cell imaging ex vivo and in vivo., Nature methods

Published in March 12, 2026 (Electronic publication in March 12, 2026, midnight )

(Abstract) Tissue clearing has been widely used for fluorescence imaging of fixed tissues, but its application to live tissues has been limited by toxicity. Here we develop minimally invasive optical clearing media for fluorescence imaging of live mammalian tissues. Light scattering is minimized by adding spherical polymers with low osmolarity to the extracellular medium. A clearing medium containing bovine serum albumin (SeeDB-Live) is compatible with live cells, enabling structural and functional imaging of live tissues, such as spheroids, organoids, acute brain slices and the mouse brains in vivo. SeeDB-Live minimally affects neuronal electrophysiological properties and sensory responses in vivo, and facilitates fluorescence imaging of deep cortical layers in live animals without detectable toxicity to neurons or behavior. We further demonstrate its utility to epifluorescence voltage imaging in acute brain slices and in vivo preparations. Thus, SeeDB-Live expands both the depth and modality range of fluorescence imaging in live mammalian tissues.

Contact
Shigenori Inagaki, Takeshi Imai , Kyushu University, Kyushu University , Department of Developmental Neurophysiology, Department of Developmental Neurophysiology , Department of Developmental Neurophysiology, Department of Developmental Neurophysiology
Contributors

Dataset List of 484-Inagaki-SeeDBLive

Thumbnail
#
Dataset ID
Kind
Size
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Thumbnail Thumbnail for dataset Fig1o_CorticalOrganoid
# 17446
Dataset Kind Image data
Dataset Size 64.6 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig2d_1p_ctrl_1
# 17447
Datast ID Fig2d_1p_ctrl_1
Dataset Kind Image data
Dataset Size 34.2 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig2d_1p_ctrl_2
# 17448
Datast ID Fig2d_1p_ctrl_2
Dataset Kind Image data
Dataset Size 33.7 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig2d_1p_ctrl_3
# 17449
Datast ID Fig2d_1p_ctrl_3
Dataset Kind Image data
Dataset Size 42.2 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig2d_1p_ctrl_4
# 17450
Datast ID Fig2d_1p_ctrl_4
Dataset Kind Image data
Dataset Size 42.2 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig2d_1p_ctrl_5
# 17451
Datast ID Fig2d_1p_ctrl_5
Dataset Kind Image data
Dataset Size 42.2 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig2d_1p_SDL_1
# 17452
Datast ID Fig2d_1p_SDL_1
Dataset Kind Image data
Dataset Size 32.7 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig2d_1p_SDL_2
# 17453
Datast ID Fig2d_1p_SDL_2
Dataset Kind Image data
Dataset Size 33.7 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig2d_1p_SDL_3
# 17454
Datast ID Fig2d_1p_SDL_3
Dataset Kind Image data
Dataset Size 50.7 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig2d_1p_SDL_4
# 17455
Datast ID Fig2d_1p_SDL_4
Dataset Kind Image data
Dataset Size 50.7 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig2d_1p_SDL_5
# 17456
Datast ID Fig2d_1p_SDL_5
Dataset Kind Image data
Dataset Size 42.2 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig2e_2p_ctrl_1
# 17457
Datast ID Fig2e_2p_ctrl_1
Dataset Kind Image data
Dataset Size 46.7 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig2e_2p_ctrl_2
# 17458
Datast ID Fig2e_2p_ctrl_2
Dataset Kind Image data
Dataset Size 47.7 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig2e_2p_ctrl_3
# 17459
Datast ID Fig2e_2p_ctrl_3
Dataset Kind Image data
Dataset Size 50.7 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig2e_2p_ctrl_4
# 17460
Datast ID Fig2e_2p_ctrl_4
Dataset Kind Image data
Dataset Size 50.7 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig2e_2p_ctrl_5
# 17461
Datast ID Fig2e_2p_ctrl_5
Dataset Kind Image data
Dataset Size 50.7 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig2e_2p_SDL_1
# 17462
Datast ID Fig2e_2p_SDL_1
Dataset Kind Image data
Dataset Size 48.2 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig2e_2p_SDL_2
# 17463
Datast ID Fig2e_2p_SDL_2
Dataset Kind Image data
Dataset Size 58.7 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig2e_2p_SDL_3
# 17464
Datast ID Fig2e_2p_SDL_3
Dataset Kind Image data
Dataset Size 50.7 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig2e_2p_SDL_4
# 17465
Datast ID Fig2e_2p_SDL_4
Dataset Kind Image data
Dataset Size 50.7 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig2e_2p_SDL_5
# 17466
Datast ID Fig2e_2p_SDL_5
Dataset Kind Image data
Dataset Size 50.7 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig3f_beforeSDL
# 17467
Datast ID Fig3f_beforeSDL
Dataset Kind Image data
Dataset Size 90.2 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig3f_duringSDL
# 17468
Datast ID Fig3f_duringSDL
Dataset Kind Image data
Dataset Size 90.2 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig3f_afterSDL
# 17469
Datast ID Fig3f_afterSDL
Dataset Kind Image data
Dataset Size 90.2 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig3gh_beforeSDL_1
# 17470
Datast ID Fig3gh_beforeSDL_1
Dataset Kind Image data
Dataset Size 90.2 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig3gh_duringSDL_1
# 17471
Datast ID Fig3gh_duringSDL_1
Dataset Kind Image data
Dataset Size 90.2 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig3gh_afterSDL_1
# 17472
Datast ID Fig3gh_afterSDL_1
Dataset Kind Image data
Dataset Size 90.2 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig3gh_beforeSDL_2
# 17473
Datast ID Fig3gh_beforeSDL_2
Dataset Kind Image data
Dataset Size 90.2 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig3gh_duringSDL_2
# 17474
Datast ID Fig3gh_duringSDL_2
Dataset Kind Image data
Dataset Size 90.2 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig3gh_afterSDL_2
# 17475
Datast ID Fig3gh_afterSDL_2
Dataset Kind Image data
Dataset Size 90.2 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig3gh_beforeSDL_3
# 17476
Datast ID Fig3gh_beforeSDL_3
Dataset Kind Image data
Dataset Size 90.2 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig3gh_duringSDL_3
# 17477
Datast ID Fig3gh_duringSDL_3
Dataset Kind Image data
Dataset Size 90.2 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig3gh_afterSDL_3
# 17478
Datast ID Fig3gh_afterSDL_3
Dataset Kind Image data
Dataset Size 90.2 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig3gh_beforeSDL_4
# 17479
Datast ID Fig3gh_beforeSDL_4
Dataset Kind Image data
Dataset Size 90.2 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig3gh_duringSDL_4
# 17480
Datast ID Fig3gh_duringSDL_4
Dataset Kind Image data
Dataset Size 90.2 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig3gh_afterSDL_4
# 17481
Datast ID Fig3gh_afterSDL_4
Dataset Kind Image data
Dataset Size 90.2 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig3jk_NMDAstim_ctrl_1
# 17482
Dataset Kind Image data
Dataset Size 168.7 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig3jk_NMDAstim_ctrl_2
# 17483
Dataset Kind Image data
Dataset Size 166.2 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig3jk_NMDAstim_ctrl_3
# 17484
Dataset Kind Image data
Dataset Size 168.7 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig3jk_NMDAstim_SDL_1
# 17485
Dataset Kind Image data
Dataset Size 170.7 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig3jk_NMDAstim_SDL_2
# 17486
Dataset Kind Image data
Dataset Size 168.7 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig3jk_NMDAstim_SDL_3
# 17487
Dataset Kind Image data
Dataset Size 203.3 MB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig3l_150um_SDL
# 17488
Datast ID Fig3l_150um_SDL
Dataset Kind Image data
Dataset Size 4.5 GB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig3mn_150um_SDL_2
# 17489
Datast ID Fig3mn_150um_SDL_2
Dataset Kind Image data
Dataset Size 500.4 MB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig3mn_150um_SDL_3
# 17490
Datast ID Fig3mn_150um_SDL_3
Dataset Kind Image data
Dataset Size 4.5 GB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig3o_P13_ACSF
# 17491
Datast ID Fig3o_P13_ACSF
Dataset Kind Image data
Dataset Size 15.9 MB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig3o_P13_SDL
# 17492
Datast ID Fig3o_P13_SDL
Dataset Kind Image data
Dataset Size 16.0 MB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig4d_L5ET_ctrl
# 17493
Datast ID Fig4d_L5ET_ctrl
Dataset Kind Image data
Dataset Size 116.6 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig4d_L5ET_SDL
# 17494
Datast ID Fig4d_L5ET_SDL
Dataset Kind Image data
Dataset Size 116.6 MB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig4f_L5ET_ctrl_1
# 17495
Datast ID Fig4f_L5ET_ctrl_1
Dataset Kind Image data
Dataset Size 116.6 MB
4D view
SSBD:OMERO
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