SSBD:database

309-Fujioka-RamanProbe

OMERO gallery,
OMERO index

Project

Title
Detection of multiple enzyme activities simultaneously in live cells by using activatable Raman probes
Description
License
CC BY
Released at
Nov. 25, 2024, midnight
Updated at
Funding
# of image datasets
16

Papers

Papers
Paper information: Hiroyoshi Fujioka, Minoru Kawatani, Spencer John Spratt, Ayumi Komazawa, Yoshihiro Misawa, Jingwen Shou, Takaha Mizuguchi, Hina Kosakamoto, Ryosuke Kojima, Yasuteru Urano, Fumiaki Obata, Yasuyuki Ozeki, Mako Kamiya (2023) Activatable Raman Probes Utilizing Enzyme-Induced Aggregate Formation for Selective Ex Vivo Imaging., Journal of the American Chemical Society,
Pubmed ID: 37057960,
DOI: https://doi.org/10.1021/jacs.2c12381,

Contacts

Contacts
Mako Kamiya (Contact) , Department of Life Science and Technology , Tokyo Institute of Technology

Biosamples

Organisms
Homo sapiens (NCBI:txid9606)
Drosophila (NCBI:txid7215)
Strains
NA
Cells
Cell lines
NCl-H226 (CLO_0008068)
HEK-LacZ
NA
A549 cell (CLO_0001601)
HEK293 (CLO_0001230)

Anatomical information

UBERON
Anatomical entities

Gene ontology

GO: Biological processes
GO: Cellular components
GO: Molecular functions

Molecular biological information

Gene names
Protein names
Genetic methods
Protein tags
Probes
Oligo Primer
Genotype

Reagent or Compound

Reagent or Compound
Concentration
Fold Dilution

Imaging information

Dimensions
X scales
0.19 micrometer/pixel, 0.16 micrometer/pixel,
Y scales
0.19 micrometer/pixel, 0.16 micrometer/pixel,
Z scales
3 micrometer/slice, NA,
T scales
NA,
Channels
,

Biological Imaging Methods Ontology

Microscopy types
Detection methods
Visualization methods
Illumination methods
Sources of contrast
Contrast enhancing methods
Resolution enhancing methods
Imaged parameters
Sample preparation methods

Instruments

Datasets

Dataset name
Organism
Gene / Protein
Dimensions
File size
SSBD:OMERO
Download
Fig3c_HEK_betaGal
Homo sapiens (NCBI:txid9606)
1000524
Gallery, Index
zip
Fig4c_A549
Homo sapiens (NCBI:txid9606)
2002504
Gallery, Index
zip
Fig4c_H226
Homo sapiens (NCBI:txid9606)
2002563
Gallery, Index
zip
Fig5b_WingDisc_betaGal
Drosophila (NCBI:txid7215)
1002074
Gallery, Index
zip
Fig5d_FatBody_betaGal
Drosophila (NCBI:txid7215)
1002012
Gallery, Index
zip
FigS18_9CN-JR-Bn-bGal
Homo sapiens (NCBI:txid9606)
1002074
Gallery, Index
zip
FigS18_9C15N-JCR-Bn-bGal
Homo sapiens (NCBI:txid9606)
1002156
Gallery, Index
zip
FigS19_HEK_betaGal
Homo sapiens (NCBI:txid9606)
500271
Gallery, Index
zip
FigS22_betaGal
Homo sapiens (NCBI:txid9606)
1502350
Gallery, Index
zip
FigS24_bataGal_inhibit
Homo sapiens (NCBI:txid9606)
1000524
Gallery, Index
zip
FigS24_HEK293
Homo sapiens (NCBI:txid9606)
1000524
Gallery, Index
zip
FigS35a_3D_WingDisc
Drosophila (NCBI:txid7215)
24024246
Gallery, Index
zip
FigS36_Zstack_WingDisc
Drosophila (NCBI:txid7215)
48024778
Gallery, Index
zip
FigS37_dualSRS_WingDisc
Drosophila (NCBI:txid7215)
1500792
Gallery, Index
zip
FigS38_dualSRS_FatBody
Drosophila (NCBI:txid7215)
1502329
Gallery, Index
zip
FigS39_WingDisc_GGT
Drosophila (NCBI:txid7215)
1000522
Gallery, Index
zip