Summary of 72-Kyogoku-CytoplasmNucDyn


SSBD:database
SSBD:database URL

SSBD:repository
SSBD:repository URL

Title
Timelapse images and BDML file for quantitative information about the cytoplasmic size affecting nuclear dynamics during mouse oocytes meiosis
Description
-
Release date
2021-11-30
Updated date
-
License
CC BY
Kind
Image data based on Experiment
Number of Datasets
453 ( Image datasets: 453, Quantitative data datasets: 0 )
Size of Datasets
6.7 TB ( Image datasets: 6.7 TB, Quantitative data datasets: 0 bytes )

Organism(s)
Mus musculus
Gene symbol(s)
C-Mad2, Hec-1, Hec1
Protein name(s)
ACA, Aurora B/C, CENP-C, CENP-E, H2B, MCAK, Securin
Protein tag(s)
2mNeonGreen, EGFP, mCherry, mNeonGreen, mNeonGreen. mCherry

Datatype
-
Molecular Function (MF)
-
Biological Process (BP)
cytoplasm organization, nuclear envelope breakdown, mitotic cell cycle
Cellular Component (CC)
chromosome, kinetochore microtubule
Biological Imaging Method
time lapse microscopy, fluorescence microscopy
X scale
0.0527153 micrometer/pixel, 0.1037832 micrometer/pixel, 0.1037832 micrometer/pixel, 0.0922518 micrometer/pixel, 0.2075665 micrometer/pixel, 0.0691888 micrometer/pixel, 0.4151329 micrometer/pixel, 0.0415133 micrometer/pixel, 0.0638666 micrometer/pixel, 0.0593047 micrometer/pixel, 0.1383776 micrometer/pixel, 0.1186094 micrometer/pixel, 0.1660532 micrometer/pixel, 0.0830266 micrometer/pixel
Y scale
0.0527153 micrometer/pixel, 0.1037832 micrometer/pixel, 0.1037832 micrometer/pixel, 0.0922518 micrometer/pixel, 0.2075665 micrometer/pixel, 0.0691888 micrometer/pixel, 0.4151329 micrometer/pixel, 0.0415133 micrometer/pixel, 0.0638666 micrometer/pixel, 0.0593047 micrometer/pixel, 0.1383776 micrometer/pixel, 0.1186094 micrometer/pixel, 0.1660532 micrometer/pixel, 0.0830266 micrometer/pixel
Z scale
1 micrometer/slice, 4 micrometer/slice, 0.3791020 micrometer/slice, 0.5 micrometer/slice, 0.3125801 micrometer/slice, 1.5 micrometer/slice
T scale
2 minutes for each time interval, 3 minutes for each time interval, 6 minutes for each time interval, NA, 5 minutes for each time interval, 1 minute for each time interval

Image Acquisition
Experiment type
-
Microscope type
-
Acquisition mode
-
Contrast method
-
Microscope model
-
Detector model
-
Objective model
-
Filter set
-

Related paper(s)

Hirohisa Kyogoku, Tomoya S Kitajima (2017) Large Cytoplasm Is Linked to the Error-Prone Nature of Oocytes., Developmental cell, Volume 41, Number 3, pp. 287-298.e4

Published in 2017 May 8

(Abstract) Chromosome segregation during meiosis in oocytes is error prone. The uniquely large cytoplasmic size of oocytes, which provides support for embryogenesis after fertilization, might be a predisposing factor for meiotic errors. However, this hypothesis remains unproven. Here, we show that cytoplasmic size affects the functionality of the acentrosomal spindle. Artificially decreasing the cytoplasmic size in mouse oocytes allows the acentrosomal spindle poles to have a better-focused distribution of microtubule-organizing centers and to biorient chromosomes more efficiently, whereas enlargement of the cytoplasmic size has the opposite effects. Moreover, we found that the cytoplasmic size-dependent dilution of nuclear factors, including anaphase inhibitors that are preformed at the nuclear membrane, limits the spindle's capacity to prevent anaphase entry with misaligned chromosomes. The present study defines a large cytoplasmic volume as a cell-intrinsic feature linked to the error-prone nature of oocytes. This may represent a trade-off between meiotic fidelity and post-fertilization developmental competence.
(MeSH Terms)

Contact
Tomoya S. Kitajima , RIKEN , Center for Biosystems Dynamics Research , Laboratory for Chromosome Segregation
Contributors
NA

Dataset List of 72-Kyogoku-CytoplasmNucDyn

Thumbnail
#
Dataset ID
Kind
Size
4D View
SSBD:OMERO
Download BDML
Download Images
Thumbnail Thumbnail for dataset Figure6E_2016_02_22_half_1_5h
# 6527
Dataset Kind Image data
Dataset Size 689.5 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure6E_2016_02_22_half_2_5h
# 6528
Dataset Kind Image data
Dataset Size 685.2 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure6E_2016_02_24_EFcon_3_5h
# 6529
Dataset Kind Image data
Dataset Size 1.0 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure6E_2016_02_24_EFcon_3_5h_2
# 6530
Dataset Kind Image data
Dataset Size 1.5 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure6E_2016_02_24_Giant_4h
# 6531
Dataset Kind Image data
Dataset Size 1.5 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure6E_2016_02_24_Giant_4h_2
# 6532
Dataset Kind Image data
Dataset Size 1.7 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure6E_2016_02_25_control_3_5h
# 6533
Dataset Kind Image data
Dataset Size 1.3 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure6E_2016_02_25_half_3h
# 6534
Dataset Kind Image data
Dataset Size 1.1 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure6E_2016_04_08_EFcon
# 6535
Dataset Kind Image data
Dataset Size 902.4 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure6E_2016_04_08_Giant
# 6536
Dataset Kind Image data
Dataset Size 309.7 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure6E_2016_01182_con_2_5h
# 6537
Dataset Kind Image data
Dataset Size 904.4 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure6E_2016_01182_con_3_5h
# 6538
Dataset Kind Image data
Dataset Size 736.4 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure6E_2016_01182_half_2h
# 6539
Dataset Kind Image data
Dataset Size 738.8 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure6E_2016_01182_half_3h
# 6540
Dataset Kind Image data
Dataset Size 658.8 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure6G_2014_4_18
# 6541
Datast ID Figure6G_2014_4_18
Dataset Kind Image data
Dataset Size 66.5 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure6G_2014_4_24
# 6542
Datast ID Figure6G_2014_4_24
Dataset Kind Image data
Dataset Size 68.6 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure6G_2014_5_21
# 6543
Datast ID Figure6G_2014_5_21
Dataset Kind Image data
Dataset Size 62.2 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure6G_2014_5_29
# 6544
Datast ID Figure6G_2014_5_29
Dataset Kind Image data
Dataset Size 42.9 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure6G_2014_6_5
# 6545
Datast ID Figure6G_2014_6_5
Dataset Kind Image data
Dataset Size 68.6 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure6G_2014_11_28
# 6546
Dataset Kind Image data
Dataset Size 51.5 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure6H_2016_4_5_1
# 6547
Dataset Kind Image data
Dataset Size 4.5 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure6H_2016_4_5_2
# 6548
Dataset Kind Image data
Dataset Size 51.3 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure6H_2016_4_12_1
# 6549
Dataset Kind Image data
Dataset Size 5.1 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure6H_2016_4_12_2
# 6550
Dataset Kind Image data
Dataset Size 62.3 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure6H_2016_4_14_1
# 6551
Dataset Kind Image data
Dataset Size 6.6 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure6H_2016_4_14_2
# 6552
Dataset Kind Image data
Dataset Size 64.5 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure6H_2016_4_15_1
# 6553
Dataset Kind Image data
Dataset Size 4.4 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure6H_2016_4_15_2
# 6554
Dataset Kind Image data
Dataset Size 72.9 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure6H_2016_5_11_1
# 6555
Dataset Kind Image data
Dataset Size 10.7 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure6H_2016_5_11_2
# 6556
Dataset Kind Image data
Dataset Size 68.6 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure6H_2016_5_13_1
# 6557
Dataset Kind Image data
Dataset Size 6.3 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure6H_2016_5_13_2
# 6558
Dataset Kind Image data
Dataset Size 84.3 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure7B_2013_5_8
# 6559
Datast ID Figure7B_2013_5_8
Dataset Kind Image data
Dataset Size 18.2 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure7B_2013_5_8_L1_con1
# 6560
Dataset Kind Image data
Dataset Size 98.9 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure7B_2013_5_8_L1_con2
# 6561
Dataset Kind Image data
Dataset Size 98.9 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure7B_2013_5_8_L1_con3
# 6562
Dataset Kind Image data
Dataset Size 98.9 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure7B_2013_5_8_L1_con4
# 6563
Dataset Kind Image data
Dataset Size 98.9 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure7B_2013_5_8_L1_con5
# 6564
Dataset Kind Image data
Dataset Size 98.9 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure7B_2013_5_8_L1_con6
# 6565
Dataset Kind Image data
Dataset Size 98.9 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure7B_2013_5_8_L1_con7
# 6566
Dataset Kind Image data
Dataset Size 98.9 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure7B_2013_5_8_L1_con8
# 6567
Dataset Kind Image data
Dataset Size 98.9 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure7B_2013_5_8_L1_con9
# 6568
Dataset Kind Image data
Dataset Size 98.9 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure7B_2013_5_8_L1_con10
# 6569
Dataset Kind Image data
Dataset Size 98.9 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure7B_2013_5_8_L1_con11
# 6570
Dataset Kind Image data
Dataset Size 98.9 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure7B_2013_5_8_L1_con12
# 6571
Dataset Kind Image data
Dataset Size 98.9 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure7B_2013_5_8_L1_con13
# 6572
Dataset Kind Image data
Dataset Size 98.9 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure7B_2013_5_8_L1_con14
# 6573
Dataset Kind Image data
Dataset Size 98.9 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure7B_2013_5_8_L1_con15
# 6574
Dataset Kind Image data
Dataset Size 98.9 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure7B_2013_5_8_L1_con16
# 6575
Dataset Kind Image data
Dataset Size 98.9 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure7B_2013_5_8_L1_con17
# 6576
Dataset Kind Image data
Dataset Size 98.9 MB
4D view
SSBD:OMERO
Download BDML
Download Image data