Summary of 72-Kyogoku-CytoplasmNucDyn


SSBD:database
SSBD:database URL

SSBD:repository
SSBD:repository URL

Title
Timelapse images and BDML file for quantitative information about the cytoplasmic size affecting nuclear dynamics during mouse oocytes meiosis
Description
-
Release date
2021-11-30
Updated date
-
License
CC BY
Kind
Image data based on Experiment
Number of Datasets
453 ( Image datasets: 453, Quantitative data datasets: 0 )
Size of Datasets
6.7 TB ( Image datasets: 6.7 TB, Quantitative data datasets: 0 bytes )

Organism(s)
Mus musculus
Gene symbol(s)
C-Mad2, Hec-1, Hec1
Protein name(s)
ACA, Aurora B/C, CENP-C, CENP-E, H2B, MCAK, Securin
Protein tag(s)
2mNeonGreen, EGFP, mCherry, mNeonGreen, mNeonGreen. mCherry

Datatype
-
Molecular Function (MF)
-
Biological Process (BP)
cytoplasm organization, nuclear envelope breakdown, mitotic cell cycle
Cellular Component (CC)
chromosome, kinetochore microtubule
Biological Imaging Method
time lapse microscopy, fluorescence microscopy
X scale
0.0527153 micrometer/pixel, 0.1037832 micrometer/pixel, 0.1037832 micrometer/pixel, 0.0922518 micrometer/pixel, 0.2075665 micrometer/pixel, 0.0691888 micrometer/pixel, 0.4151329 micrometer/pixel, 0.0415133 micrometer/pixel, 0.0638666 micrometer/pixel, 0.0593047 micrometer/pixel, 0.1383776 micrometer/pixel, 0.1186094 micrometer/pixel, 0.1660532 micrometer/pixel, 0.0830266 micrometer/pixel
Y scale
0.0527153 micrometer/pixel, 0.1037832 micrometer/pixel, 0.1037832 micrometer/pixel, 0.0922518 micrometer/pixel, 0.2075665 micrometer/pixel, 0.0691888 micrometer/pixel, 0.4151329 micrometer/pixel, 0.0415133 micrometer/pixel, 0.0638666 micrometer/pixel, 0.0593047 micrometer/pixel, 0.1383776 micrometer/pixel, 0.1186094 micrometer/pixel, 0.1660532 micrometer/pixel, 0.0830266 micrometer/pixel
Z scale
1 micrometer/slice, 4 micrometer/slice, 0.3791020 micrometer/slice, 0.5 micrometer/slice, 0.3125801 micrometer/slice, 1.5 micrometer/slice
T scale
2 minutes for each time interval, 3 minutes for each time interval, 6 minutes for each time interval, NA, 5 minutes for each time interval, 1 minute for each time interval

Image Acquisition
Experiment type
-
Microscope type
-
Acquisition mode
-
Contrast method
-
Microscope model
-
Detector model
-
Objective model
-
Filter set
-

Related paper(s)

Hirohisa Kyogoku, Tomoya S Kitajima (2017) Large Cytoplasm Is Linked to the Error-Prone Nature of Oocytes., Developmental cell, Volume 41, Number 3, pp. 287-298.e4

Published in 2017 May 8

(Abstract) Chromosome segregation during meiosis in oocytes is error prone. The uniquely large cytoplasmic size of oocytes, which provides support for embryogenesis after fertilization, might be a predisposing factor for meiotic errors. However, this hypothesis remains unproven. Here, we show that cytoplasmic size affects the functionality of the acentrosomal spindle. Artificially decreasing the cytoplasmic size in mouse oocytes allows the acentrosomal spindle poles to have a better-focused distribution of microtubule-organizing centers and to biorient chromosomes more efficiently, whereas enlargement of the cytoplasmic size has the opposite effects. Moreover, we found that the cytoplasmic size-dependent dilution of nuclear factors, including anaphase inhibitors that are preformed at the nuclear membrane, limits the spindle's capacity to prevent anaphase entry with misaligned chromosomes. The present study defines a large cytoplasmic volume as a cell-intrinsic feature linked to the error-prone nature of oocytes. This may represent a trade-off between meiotic fidelity and post-fertilization developmental competence.
(MeSH Terms)

Contact
Tomoya S. Kitajima , RIKEN , Center for Biosystems Dynamics Research , Laboratory for Chromosome Segregation
Contributors
NA

Dataset List of 72-Kyogoku-CytoplasmNucDyn

Thumbnail
#
Dataset ID
Kind
Size
4D View
SSBD:OMERO
Download BDML
Download Images
Thumbnail Thumbnail for dataset Figure5D_KTtracking_2016_5_30
# 6427
Dataset Kind Image data
Dataset Size 106.8 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure5D_KTtracking_20160223_L19_con1
# 6428
Dataset Kind Image data
Dataset Size 133.5 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure5D_KTtracking_20160223_L19_con2
# 6429
Dataset Kind Image data
Dataset Size 133.5 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure5D_KTtracking_20160223_L19_con3
# 6430
Dataset Kind Image data
Dataset Size 133.5 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure5D_KTtracking_20160223_L19_con4
# 6431
Dataset Kind Image data
Dataset Size 133.5 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure5D_KTtracking_20160223_L19_con5
# 6432
Dataset Kind Image data
Dataset Size 133.5 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure5D_KTtracking_20160223_L23_con1
# 6433
Dataset Kind Image data
Dataset Size 133.5 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure5D_KTtracking_20160223_L23_con2
# 6434
Dataset Kind Image data
Dataset Size 133.5 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure5D_KTtracking_20160223_L23_con3
# 6435
Dataset Kind Image data
Dataset Size 133.5 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure5D_KTtracking_20160223_L23_con4
# 6436
Dataset Kind Image data
Dataset Size 133.5 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure5D_KTtracking_20160223_L23_con5
# 6437
Dataset Kind Image data
Dataset Size 133.5 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure5D_KTtracking_20160223_L24_con1
# 6438
Dataset Kind Image data
Dataset Size 133.5 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure5D_KTtracking_20160223_L24_con2
# 6439
Dataset Kind Image data
Dataset Size 133.5 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure5D_KTtracking_20160223_L24_con3
# 6440
Dataset Kind Image data
Dataset Size 133.5 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure5D_KTtracking_20160223_L24_con4
# 6441
Dataset Kind Image data
Dataset Size 133.5 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure5D_KTtracking_doubled
# 6442
Dataset Kind Image data
Dataset Size 118.7 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure5D_KTtracking_doubled_EFcon_con1
# 6443
Dataset Kind Image data
Dataset Size 674.5 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure5D_KTtracking_doubled_EFcon_con2
# 6444
Dataset Kind Image data
Dataset Size 674.5 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure5D_KTtracking_doubled_EFcon_con3
# 6445
Dataset Kind Image data
Dataset Size 674.5 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure5D_KTtracking_doubled_EFcon_con4
# 6446
Dataset Kind Image data
Dataset Size 674.5 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure5D_KTtracking_doubled_L2_con1
# 6447
Dataset Kind Image data
Dataset Size 674.5 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure5D_KTtracking_doubled_L2_con2
# 6448
Dataset Kind Image data
Dataset Size 674.5 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure5D_KTtracking_doubled_L2_con3
# 6449
Dataset Kind Image data
Dataset Size 674.5 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure5D_KTtracking_doubled_L2_con4
# 6450
Dataset Kind Image data
Dataset Size 674.5 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure5D_KTtracking_Half_20160223_L2_con1
# 6451
Dataset Kind Image data
Dataset Size 133.5 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure5D_KTtracking_Half_20160223_L2_con2
# 6452
Dataset Kind Image data
Dataset Size 133.5 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure5D_KTtracking_Half_20160223_L2_con3
# 6453
Dataset Kind Image data
Dataset Size 133.5 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure5D_KTtracking_Half_20160223_L2_con4
# 6454
Dataset Kind Image data
Dataset Size 133.5 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure5D_KTtracking_Half_20160223_L9_con1
# 6455
Dataset Kind Image data
Dataset Size 133.5 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure5D_KTtracking_Half_20160223_L9_con2
# 6456
Dataset Kind Image data
Dataset Size 133.5 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure5D_KTtracking_Half_20160223_L9_con3
# 6457
Dataset Kind Image data
Dataset Size 133.5 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure5D_KTtracking_Half_20160223_L9_con4
# 6458
Dataset Kind Image data
Dataset Size 133.5 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure5D_KTtracking_Half_20160223_L10_con1
# 6459
Dataset Kind Image data
Dataset Size 133.5 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure5D_KTtracking_misalign_20160225_L2_con2
# 6460
Dataset Kind Image data
Dataset Size 98.9 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure5D_KTtracking_misalign_20160225_L2_con3
# 6461
Dataset Kind Image data
Dataset Size 98.9 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure5D_KTtracking_misalign_20160225_L16_con2
# 6462
Dataset Kind Image data
Dataset Size 98.9 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure5D_KTtracking_misalign_20160225_L16_con3
# 6463
Dataset Kind Image data
Dataset Size 98.9 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure5D_KTtracking_misalign_20160225_L17_con2
# 6464
Dataset Kind Image data
Dataset Size 98.9 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure5D_KTtracking_misalign_20160225_L17_con3
# 6465
Dataset Kind Image data
Dataset Size 98.9 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure5D_KTtracking_misalign_20160225_L29_con2
# 6466
Dataset Kind Image data
Dataset Size 98.9 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure5D_KTtracking_misalign_20160225_L29_con3
# 6467
Dataset Kind Image data
Dataset Size 98.9 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure5D_KTtracking_misalign_20160527_L1_con1
# 6468
Dataset Kind Image data
Dataset Size 674.5 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure5D_KTtracking_misalign_20160527_L1_con2
# 6469
Dataset Kind Image data
Dataset Size 674.5 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure5D_KTtracking_misalign_20160527_L1_con3
# 6470
Dataset Kind Image data
Dataset Size 674.5 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure5D_KTtracking_misalign_20160527_L1_con4
# 6471
Dataset Kind Image data
Dataset Size 674.5 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure5D_KTtracking_misalign_20160527_L3_con1
# 6472
Dataset Kind Image data
Dataset Size 674.5 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure5D_KTtracking_misalign_20160527_L3_con2
# 6473
Dataset Kind Image data
Dataset Size 674.5 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure5D_KTtracking_misalign_20160527_L3_con3
# 6474
Dataset Kind Image data
Dataset Size 674.5 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure5D_KTtracking_misalign_20160527_L3_con4
# 6475
Dataset Kind Image data
Dataset Size 674.5 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure5D_KTtracking_misalign_20160527_L4_con2
# 6476
Dataset Kind Image data
Dataset Size 674.5 MB
4D view
SSBD:OMERO
Download BDML
Download Image data