Summary of 72-Kyogoku-CytoplasmNucDyn


SSBD:database
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SSBD:repository
SSBD:repository URL

Title
Timelapse images and BDML file for quantitative information about the cytoplasmic size affecting nuclear dynamics during mouse oocytes meiosis
Description
-
Release date
2021-11-30
Updated date
-
License
CC BY
Kind
Image data based on Experiment
Number of Datasets
453 ( Image datasets: 453, Quantitative data datasets: 0 )
Size of Datasets
6.7 TB ( Image datasets: 6.7 TB, Quantitative data datasets: 0 bytes )

Organism(s)
Mus musculus
Gene symbol(s)
C-Mad2, Hec-1, Hec1
Protein name(s)
ACA, Aurora B/C, CENP-C, CENP-E, H2B, MCAK, Securin
Protein tag(s)
2mNeonGreen, EGFP, mCherry, mNeonGreen, mNeonGreen. mCherry

Datatype
-
Molecular Function (MF)
-
Biological Process (BP)
cytoplasm organization, nuclear envelope breakdown, mitotic cell cycle
Cellular Component (CC)
chromosome, kinetochore microtubule
Biological Imaging Method
time lapse microscopy, fluorescence microscopy
X scale
0.0527153 micrometer/pixel, 0.1037832 micrometer/pixel, 0.1037832 micrometer/pixel, 0.0922518 micrometer/pixel, 0.2075665 micrometer/pixel, 0.0691888 micrometer/pixel, 0.4151329 micrometer/pixel, 0.0415133 micrometer/pixel, 0.0638666 micrometer/pixel, 0.0593047 micrometer/pixel, 0.1383776 micrometer/pixel, 0.1186094 micrometer/pixel, 0.1660532 micrometer/pixel, 0.0830266 micrometer/pixel
Y scale
0.0527153 micrometer/pixel, 0.1037832 micrometer/pixel, 0.1037832 micrometer/pixel, 0.0922518 micrometer/pixel, 0.2075665 micrometer/pixel, 0.0691888 micrometer/pixel, 0.4151329 micrometer/pixel, 0.0415133 micrometer/pixel, 0.0638666 micrometer/pixel, 0.0593047 micrometer/pixel, 0.1383776 micrometer/pixel, 0.1186094 micrometer/pixel, 0.1660532 micrometer/pixel, 0.0830266 micrometer/pixel
Z scale
1 micrometer/slice, 4 micrometer/slice, 0.3791020 micrometer/slice, 0.5 micrometer/slice, 0.3125801 micrometer/slice, 1.5 micrometer/slice
T scale
2 minutes for each time interval, 3 minutes for each time interval, 6 minutes for each time interval, NA, 5 minutes for each time interval, 1 minute for each time interval

Image Acquisition
Experiment type
-
Microscope type
-
Acquisition mode
-
Contrast method
-
Microscope model
-
Detector model
-
Objective model
-
Filter set
-

Related paper(s)

Hirohisa Kyogoku, Tomoya S Kitajima (2017) Large Cytoplasm Is Linked to the Error-Prone Nature of Oocytes., Developmental cell, Volume 41, Number 3, pp. 287-298.e4

Published in 2017 May 8

(Abstract) Chromosome segregation during meiosis in oocytes is error prone. The uniquely large cytoplasmic size of oocytes, which provides support for embryogenesis after fertilization, might be a predisposing factor for meiotic errors. However, this hypothesis remains unproven. Here, we show that cytoplasmic size affects the functionality of the acentrosomal spindle. Artificially decreasing the cytoplasmic size in mouse oocytes allows the acentrosomal spindle poles to have a better-focused distribution of microtubule-organizing centers and to biorient chromosomes more efficiently, whereas enlargement of the cytoplasmic size has the opposite effects. Moreover, we found that the cytoplasmic size-dependent dilution of nuclear factors, including anaphase inhibitors that are preformed at the nuclear membrane, limits the spindle's capacity to prevent anaphase entry with misaligned chromosomes. The present study defines a large cytoplasmic volume as a cell-intrinsic feature linked to the error-prone nature of oocytes. This may represent a trade-off between meiotic fidelity and post-fertilization developmental competence.
(MeSH Terms)

Contact
Tomoya S. Kitajima , RIKEN , Center for Biosystems Dynamics Research , Laboratory for Chromosome Segregation
Contributors
NA

Dataset List of 72-Kyogoku-CytoplasmNucDyn

Thumbnail
#
Dataset ID
Kind
Size
4D View
SSBD:OMERO
Download BDML
Download Images
Thumbnail Thumbnail for dataset FigureS3A_misalign_20160408_C-Mad2_EFcon
# 6627
Dataset Kind Image data
Dataset Size 902.4 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset FigureS3A_misalign_20160408_C-Mad2_EFcon_GV
# 6628
Dataset Kind Image data
Dataset Size 391.6 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset FigureS3A_misalign_20160408_C-Mad2_Giant
# 6629
Dataset Kind Image data
Dataset Size 309.7 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset FigureS3A_misalign_20160408_C-Mad2_Giant_GV
# 6630
Dataset Kind Image data
Dataset Size 342.4 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset FigureS3A_misalign_20160429_ACA_con
# 6631
Dataset Kind Image data
Dataset Size 1.5 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset FigureS3A_misalign_20160429_ACA_half
# 6632
Dataset Kind Image data
Dataset Size 1.4 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset FigureS3A_misalign_20160509_ACA_EFcon
# 6633
Dataset Kind Image data
Dataset Size 486.1 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset FigureS3A_misalign_20160509_ACA_Giant
# 6634
Dataset Kind Image data
Dataset Size 1.8 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset FigureS3A_misalign_20160717_ACA_after
# 6635
Dataset Kind Image data
Dataset Size 800.0 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset FigureS3A_misalign_20160717_ACA_before
# 6636
Dataset Kind Image data
Dataset Size 595.0 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset FigureS3A_misalign_20160717_ACA_con
# 6637
Dataset Kind Image data
Dataset Size 824.6 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset FigureS3A_misalign_20160724_ACA_2GV
# 6638
Dataset Kind Image data
Dataset Size 690.8 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset FigureS3A_misalign_20160724_ACA_EFcon
# 6639
Dataset Kind Image data
Dataset Size 1.9 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset FigureS3A_misalign_20160808_ACA_after
# 6640
Dataset Kind Image data
Dataset Size 1.2 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset FigureS3A_misalign_20160808_ACA_before
# 6641
Dataset Kind Image data
Dataset Size 1.1 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset FigureS3A_misalign_20160808_ACA_con
# 6642
Dataset Kind Image data
Dataset Size 1.1 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset FigureS3A_misalign_20160909_ACA_con
# 6643
Dataset Kind Image data
Dataset Size 902.2 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset FigureS3A_misalign_20160909_ACA_half
# 6644
Dataset Kind Image data
Dataset Size 582.5 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset FigureS3A_misalign_20161022_kinetochore_CENPA_con
# 6645
Dataset Kind Image data
Dataset Size 790.4 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset FigureS3A_misalign_20161022_kinetochore_CENPA_half
# 6646
Dataset Kind Image data
Dataset Size 637.2 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset FigureS3A_misalign_20161022_kinetochore_CENPC_con
# 6647
Dataset Kind Image data
Dataset Size 697.5 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset FigureS3A_misalign_20161022_kinetochore_CENPC_half
# 6648
Dataset Kind Image data
Dataset Size 583.0 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset FigureS3A_misalign_20161022_kinetochore_Hec1_con
# 6649
Dataset Kind Image data
Dataset Size 906.6 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset FigureS3A_misalign_20161022_kinetochore_Hec1_half
# 6650
Dataset Kind Image data
Dataset Size 426.5 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset FigureS3A_misalign_20161024_kinetochore_CENPA_EFcon
# 6651
Dataset Kind Image data
Dataset Size 503.7 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset FigureS3A_misalign_20161024_kinetochore_CENPA_Giant
# 6652
Dataset Kind Image data
Dataset Size 557.9 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset FigureS3A_misalign_20161024_kinetochore_CENPC_EFcon
# 6653
Dataset Kind Image data
Dataset Size 471.2 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset FigureS3A_misalign_20161024_kinetochore_CENPC_Giant
# 6654
Dataset Kind Image data
Dataset Size 533.1 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset FigureS3A_misalign_20161024_kinetochore_Hec1_EFcon
# 6655
Dataset Kind Image data
Dataset Size 578.1 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset FigureS3A_misalign_20161024_kinetochore_Hec1_Giant
# 6656
Dataset Kind Image data
Dataset Size 743.7 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset FigureS3A_misalign_20161031_kinetochore_CENPC_con1
# 6657
Dataset Kind Image data
Dataset Size 643.2 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset FigureS3A_misalign_20161031_kinetochore_CENPC_con2
# 6658
Dataset Kind Image data
Dataset Size 520.6 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset FigureS3A_misalign_20161031_kinetochore_CENPC_half1
# 6659
Dataset Kind Image data
Dataset Size 544.2 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset FigureS3A_misalign_20161031_kinetochore_CENPC_half2
# 6660
Dataset Kind Image data
Dataset Size 352.1 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset FigureS3A_misalign_20161031_kinetochore_Hec_con1
# 6661
Dataset Kind Image data
Dataset Size 610.8 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset FigureS3A_misalign_20161031_kinetochore_Hec_con2
# 6662
Dataset Kind Image data
Dataset Size 409.3 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset FigureS3A_misalign_20161031_kinetochore_Hec_half1
# 6663
Dataset Kind Image data
Dataset Size 511.7 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset FigureS3A_misalign_20161031_kinetochore_Hec_half2
# 6664
Dataset Kind Image data
Dataset Size 440.4 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset FigureS3A_misalign_20161104_kinetochore_CENPC_EFcon
# 6665
Dataset Kind Image data
Dataset Size 520.9 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset FigureS3A_misalign_20161104_kinetochore_CENPC_Giant
# 6666
Dataset Kind Image data
Dataset Size 929.8 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset FigureS3A_misalign_20161104_kinetochore_Hec1_EFcon
# 6667
Dataset Kind Image data
Dataset Size 565.7 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset FigureS3A_misalign_20161104_kinetochore_Hec1_Giant
# 6668
Dataset Kind Image data
Dataset Size 917.4 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset FigureS3A_misalign_20161106_kinetochore_CENPC_EFcon
# 6669
Dataset Kind Image data
Dataset Size 413.8 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset FigureS3A_misalign_20161106_kinetochore_CENPC_Giant
# 6670
Dataset Kind Image data
Dataset Size 988.6 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset FigureS3A_misalign_20161106_kinetochore_Hec1_EFcon
# 6671
Dataset Kind Image data
Dataset Size 551.7 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset FigureS3A_misalign_20161106_kinetochore_Hec1_Giant
# 6672
Dataset Kind Image data
Dataset Size 866.2 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset FigureS3A_misalign_20161109_C-Mad2_after
# 6673
Dataset Kind Image data
Dataset Size 1019.8 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset FigureS3A_misalign_20161109_C-Mad2_before
# 6674
Dataset Kind Image data
Dataset Size 993.0 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset FigureS3A_misalign_20161109_C-Mad2_con
# 6675
Dataset Kind Image data
Dataset Size 3.0 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset FigureS3A_misalign_20161110_C-Mad2_after
# 6676
Dataset Kind Image data
Dataset Size 1.1 GB
4D view
SSBD:OMERO
Download BDML
Download Image data