Summary of 72-Kyogoku-CytoplasmNucDyn


SSBD:database
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SSBD:repository
SSBD:repository URL

Title
Timelapse images and BDML file for quantitative information about the cytoplasmic size affecting nuclear dynamics during mouse oocytes meiosis
Description
-
Release date
2021-11-30
Updated date
-
License
CC BY
Kind
Image data based on Experiment
Number of Datasets
453 ( Image datasets: 453, Quantitative data datasets: 0 )
Size of Datasets
6.7 TB ( Image datasets: 6.7 TB, Quantitative data datasets: 0 bytes )

Organism(s)
Mus musculus
Gene symbol(s)
C-Mad2, Hec-1, Hec1
Protein name(s)
ACA, Aurora B/C, CENP-C, CENP-E, H2B, MCAK, Securin
Protein tag(s)
2mNeonGreen, EGFP, mCherry, mNeonGreen, mNeonGreen. mCherry

Datatype
-
Molecular Function (MF)
-
Biological Process (BP)
cytoplasm organization, nuclear envelope breakdown, mitotic cell cycle
Cellular Component (CC)
chromosome, kinetochore microtubule
Biological Imaging Method
time lapse microscopy, fluorescence microscopy
X scale
0.0527153 micrometer/pixel, 0.1037832 micrometer/pixel, 0.1037832 micrometer/pixel, 0.0922518 micrometer/pixel, 0.2075665 micrometer/pixel, 0.0691888 micrometer/pixel, 0.4151329 micrometer/pixel, 0.0415133 micrometer/pixel, 0.0638666 micrometer/pixel, 0.0593047 micrometer/pixel, 0.1383776 micrometer/pixel, 0.1186094 micrometer/pixel, 0.1660532 micrometer/pixel, 0.0830266 micrometer/pixel
Y scale
0.0527153 micrometer/pixel, 0.1037832 micrometer/pixel, 0.1037832 micrometer/pixel, 0.0922518 micrometer/pixel, 0.2075665 micrometer/pixel, 0.0691888 micrometer/pixel, 0.4151329 micrometer/pixel, 0.0415133 micrometer/pixel, 0.0638666 micrometer/pixel, 0.0593047 micrometer/pixel, 0.1383776 micrometer/pixel, 0.1186094 micrometer/pixel, 0.1660532 micrometer/pixel, 0.0830266 micrometer/pixel
Z scale
1 micrometer/slice, 4 micrometer/slice, 0.3791020 micrometer/slice, 0.5 micrometer/slice, 0.3125801 micrometer/slice, 1.5 micrometer/slice
T scale
2 minutes for each time interval, 3 minutes for each time interval, 6 minutes for each time interval, NA, 5 minutes for each time interval, 1 minute for each time interval

Image Acquisition
Experiment type
-
Microscope type
-
Acquisition mode
-
Contrast method
-
Microscope model
-
Detector model
-
Objective model
-
Filter set
-

Related paper(s)

Hirohisa Kyogoku, Tomoya S Kitajima (2017) Large Cytoplasm Is Linked to the Error-Prone Nature of Oocytes., Developmental cell, Volume 41, Number 3, pp. 287-298.e4

Published in 2017 May 8

(Abstract) Chromosome segregation during meiosis in oocytes is error prone. The uniquely large cytoplasmic size of oocytes, which provides support for embryogenesis after fertilization, might be a predisposing factor for meiotic errors. However, this hypothesis remains unproven. Here, we show that cytoplasmic size affects the functionality of the acentrosomal spindle. Artificially decreasing the cytoplasmic size in mouse oocytes allows the acentrosomal spindle poles to have a better-focused distribution of microtubule-organizing centers and to biorient chromosomes more efficiently, whereas enlargement of the cytoplasmic size has the opposite effects. Moreover, we found that the cytoplasmic size-dependent dilution of nuclear factors, including anaphase inhibitors that are preformed at the nuclear membrane, limits the spindle's capacity to prevent anaphase entry with misaligned chromosomes. The present study defines a large cytoplasmic volume as a cell-intrinsic feature linked to the error-prone nature of oocytes. This may represent a trade-off between meiotic fidelity and post-fertilization developmental competence.
(MeSH Terms)

Contact
Tomoya S. Kitajima , RIKEN , Center for Biosystems Dynamics Research , Laboratory for Chromosome Segregation
Contributors
NA

Dataset List of 72-Kyogoku-CytoplasmNucDyn

Thumbnail
#
Dataset ID
Kind
Size
4D View
SSBD:OMERO
Download BDML
Download Images
Thumbnail Thumbnail for dataset Figure5D_KTtracking_misalign_20160527_L4_con3
# 6477
Dataset Kind Image data
Dataset Size 674.5 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure5D_KTtracking_misalign_20160527_L5_con2
# 6478
Dataset Kind Image data
Dataset Size 674.5 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure5D_KTtracking_misalign_20160527_L5_con3
# 6479
Dataset Kind Image data
Dataset Size 674.5 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure5D_KTtracking_misalign_20160527_L6_con2
# 6480
Dataset Kind Image data
Dataset Size 674.5 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure5D_KTtracking_misalign_20160527_L6_con3
# 6481
Dataset Kind Image data
Dataset Size 674.5 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure5D_KTtracking_misalign_20160527_L7_con3
# 6482
Dataset Kind Image data
Dataset Size 674.5 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure5D_KTtracking_misalign_20160527_L7_con4
# 6483
Dataset Kind Image data
Dataset Size 674.5 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure5D_KTtracking_misalign_20160527_L9_con1
# 6484
Dataset Kind Image data
Dataset Size 674.5 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure5D_KTtracking_misalign_20160527_L9_con2
# 6485
Dataset Kind Image data
Dataset Size 674.5 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure5D_KTtracking_misalign_20160527_L9_con3
# 6486
Dataset Kind Image data
Dataset Size 674.5 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure5D_KTtracking_misalign_20160527_L9_con4
# 6487
Dataset Kind Image data
Dataset Size 674.5 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure5D_KTtracking_misalign_20160530_L3_con2
# 6488
Dataset Kind Image data
Dataset Size 674.5 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure5D_KTtracking_misalign_20160530_L3_con3
# 6489
Dataset Kind Image data
Dataset Size 674.5 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure5D_KTtracking_misalign_20160530_L3_con4
# 6490
Dataset Kind Image data
Dataset Size 674.5 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure6A_2014_1_23
# 6491
Datast ID Figure6A_2014_1_23
Dataset Kind Image data
Dataset Size 103.9 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure6A_2014_2_24
# 6492
Datast ID Figure6A_2014_2_24
Dataset Kind Image data
Dataset Size 47.2 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure6A_2014_2_24_2
# 6493
Dataset Kind Image data
Dataset Size 57.0 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure6A_2014_6_25
# 6494
Datast ID Figure6A_2014_6_25
Dataset Kind Image data
Dataset Size 157.5 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure6A_2014_8_11
# 6495
Datast ID Figure6A_2014_8_11
Dataset Kind Image data
Dataset Size 943.9 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure6A_2014_8_11_2
# 6496
Dataset Kind Image data
Dataset Size 165.9 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure6A_2014_8_13
# 6497
Datast ID Figure6A_2014_8_13
Dataset Kind Image data
Dataset Size 154.2 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure6A_2015_6_25
# 6498
Datast ID Figure6A_2015_6_25
Dataset Kind Image data
Dataset Size 53.6 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure6C_2015_7_22_1
# 6499
Dataset Kind Image data
Dataset Size 8.5 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure6C_2015_7_22_2
# 6500
Dataset Kind Image data
Dataset Size 110.0 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure6C_2015_7_23_1
# 6501
Dataset Kind Image data
Dataset Size 7.2 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure6C_2015_7_23_2
# 6502
Dataset Kind Image data
Dataset Size 73.7 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure6C_2015_7_31_1
# 6503
Dataset Kind Image data
Dataset Size 8.1 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure6C_2015_7_31_2
# 6504
Dataset Kind Image data
Dataset Size 107.3 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure6C_2015_8_3_1
# 6505
Dataset Kind Image data
Dataset Size 13.0 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure6C_2015_8_3_2
# 6506
Dataset Kind Image data
Dataset Size 114.0 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure6C_2015_8_14_1
# 6507
Dataset Kind Image data
Dataset Size 5.7 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure6C_2015_8_14_2
# 6508
Dataset Kind Image data
Dataset Size 97.2 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure6C_2015_8_20_1
# 6509
Dataset Kind Image data
Dataset Size 12.6 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure6C_2015_8_20_2
# 6510
Dataset Kind Image data
Dataset Size 131.1 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure6D_2016_10_27_control
# 6511
Dataset Kind Image data
Dataset Size 1.1 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure6D_2016_10_27_Half
# 6512
Dataset Kind Image data
Dataset Size 1019.1 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure6D_2016_10_28_EFcontrol
# 6513
Dataset Kind Image data
Dataset Size 651.9 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure6D_2016_10_28_Giant
# 6514
Dataset Kind Image data
Dataset Size 1.3 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure6D_2016_10_31_C-Mad2_control_1
# 6515
Dataset Kind Image data
Dataset Size 1.3 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure6D_2016_10_31_C-Mad2_control_2
# 6516
Dataset Kind Image data
Dataset Size 1.2 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure6D_2016_10_31_C-Mad2_Half_1
# 6517
Dataset Kind Image data
Dataset Size 937.0 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure6D_2016_10_31_C-Mad2_Half_2
# 6518
Dataset Kind Image data
Dataset Size 1.0 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure6D_2016_11_03_C-Mad2_EFcontrol
# 6519
Dataset Kind Image data
Dataset Size 719.5 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure6D_2016_11_03_C-Mad2_Giant
# 6520
Dataset Kind Image data
Dataset Size 565.7 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure6D_2016_11_16_C-Mad2_EFcontrol
# 6521
Dataset Kind Image data
Dataset Size 656.0 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure6D_2016_11_16_C-Mad2_Giant
# 6522
Dataset Kind Image data
Dataset Size 379.3 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure6D_2016_11_17_C-Mad2_EFcontrol
# 6523
Dataset Kind Image data
Dataset Size 1.5 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure6D_2016_11_17_C-Mad2_Giant
# 6524
Dataset Kind Image data
Dataset Size 1.8 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure6E_2016_02_22_con_1_5h
# 6525
Dataset Kind Image data
Dataset Size 720.0 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure6E_2016_02_22_con_2_5h
# 6526
Dataset Kind Image data
Dataset Size 699.5 MB
4D view
SSBD:OMERO
Download BDML
Download Image data