Summary of 72-Kyogoku-CytoplasmNucDyn


SSBD:database
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SSBD:repository URL

Title
Timelapse images and BDML file for quantitative information about the cytoplasmic size affecting nuclear dynamics during mouse oocytes meiosis
Description
-
Release date
2021-11-30
Updated date
-
License
CC BY
Kind
Image data based on Experiment
Number of Datasets
453 ( Image datasets: 453, Quantitative data datasets: 0 )
Size of Datasets
6.7 TB ( Image datasets: 6.7 TB, Quantitative data datasets: 0 bytes )

Organism(s)
Mus musculus
Gene symbol(s)
C-Mad2, Hec-1, Hec1
Protein name(s)
ACA, Aurora B/C, CENP-C, CENP-E, H2B, MCAK, Securin
Protein tag(s)
2mNeonGreen, EGFP, mCherry, mNeonGreen, mNeonGreen. mCherry

Datatype
-
Molecular Function (MF)
-
Biological Process (BP)
cytoplasm organization, nuclear envelope breakdown, mitotic cell cycle
Cellular Component (CC)
chromosome, kinetochore microtubule
Biological Imaging Method
time lapse microscopy, fluorescence microscopy
X scale
0.0527153 micrometer/pixel, 0.1037832 micrometer/pixel, 0.1037832 micrometer/pixel, 0.0922518 micrometer/pixel, 0.2075665 micrometer/pixel, 0.0691888 micrometer/pixel, 0.4151329 micrometer/pixel, 0.0415133 micrometer/pixel, 0.0638666 micrometer/pixel, 0.0593047 micrometer/pixel, 0.1383776 micrometer/pixel, 0.1186094 micrometer/pixel, 0.1660532 micrometer/pixel, 0.0830266 micrometer/pixel
Y scale
0.0527153 micrometer/pixel, 0.1037832 micrometer/pixel, 0.1037832 micrometer/pixel, 0.0922518 micrometer/pixel, 0.2075665 micrometer/pixel, 0.0691888 micrometer/pixel, 0.4151329 micrometer/pixel, 0.0415133 micrometer/pixel, 0.0638666 micrometer/pixel, 0.0593047 micrometer/pixel, 0.1383776 micrometer/pixel, 0.1186094 micrometer/pixel, 0.1660532 micrometer/pixel, 0.0830266 micrometer/pixel
Z scale
1 micrometer/slice, 4 micrometer/slice, 0.3791020 micrometer/slice, 0.5 micrometer/slice, 0.3125801 micrometer/slice, 1.5 micrometer/slice
T scale
2 minutes for each time interval, 3 minutes for each time interval, 6 minutes for each time interval, NA, 5 minutes for each time interval, 1 minute for each time interval

Image Acquisition
Experiment type
-
Microscope type
-
Acquisition mode
-
Contrast method
-
Microscope model
-
Detector model
-
Objective model
-
Filter set
-

Related paper(s)

Hirohisa Kyogoku, Tomoya S Kitajima (2017) Large Cytoplasm Is Linked to the Error-Prone Nature of Oocytes., Developmental cell, Volume 41, Number 3, pp. 287-298.e4

Published in 2017 May 8

(Abstract) Chromosome segregation during meiosis in oocytes is error prone. The uniquely large cytoplasmic size of oocytes, which provides support for embryogenesis after fertilization, might be a predisposing factor for meiotic errors. However, this hypothesis remains unproven. Here, we show that cytoplasmic size affects the functionality of the acentrosomal spindle. Artificially decreasing the cytoplasmic size in mouse oocytes allows the acentrosomal spindle poles to have a better-focused distribution of microtubule-organizing centers and to biorient chromosomes more efficiently, whereas enlargement of the cytoplasmic size has the opposite effects. Moreover, we found that the cytoplasmic size-dependent dilution of nuclear factors, including anaphase inhibitors that are preformed at the nuclear membrane, limits the spindle's capacity to prevent anaphase entry with misaligned chromosomes. The present study defines a large cytoplasmic volume as a cell-intrinsic feature linked to the error-prone nature of oocytes. This may represent a trade-off between meiotic fidelity and post-fertilization developmental competence.
(MeSH Terms)

Contact
Tomoya S. Kitajima , RIKEN , Center for Biosystems Dynamics Research , Laboratory for Chromosome Segregation
Contributors
NA

Dataset List of 72-Kyogoku-CytoplasmNucDyn

Thumbnail
#
Dataset ID
Kind
Size
4D View
SSBD:OMERO
Download BDML
Download Images
Thumbnail Thumbnail for dataset Figure7B_2013_5_8_L1_con18
# 6577
Dataset Kind Image data
Dataset Size 98.9 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure7B_2013_6_19
# 6578
Datast ID Figure7B_2013_6_19
Dataset Kind Image data
Dataset Size 62.9 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure7B_2013_8_15
# 6579
Datast ID Figure7B_2013_8_15
Dataset Kind Image data
Dataset Size 25.0 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure7B_2013_9_17
# 6580
Datast ID Figure7B_2013_9_17
Dataset Kind Image data
Dataset Size 27.0 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure7B_2013_11_22
# 6581
Dataset Kind Image data
Dataset Size 12.1 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure7B_2013_11_27
# 6582
Dataset Kind Image data
Dataset Size 42.9 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure7B_2013_12_28
# 6583
Dataset Kind Image data
Dataset Size 72.9 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure7B_2014_1_18
# 6584
Datast ID Figure7B_2014_1_18
Dataset Kind Image data
Dataset Size 57.9 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure7B_2014_2_17
# 6585
Datast ID Figure7B_2014_2_17
Dataset Kind Image data
Dataset Size 62.2 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure7B_2014_2_26
# 6586
Datast ID Figure7B_2014_2_26
Dataset Kind Image data
Dataset Size 36.5 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure7B_2014_3_13
# 6587
Datast ID Figure7B_2014_3_13
Dataset Kind Image data
Dataset Size 40.7 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure7B_2014_4_3
# 6588
Datast ID Figure7B_2014_4_3
Dataset Kind Image data
Dataset Size 47.2 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure7B_2014_4_17
# 6589
Datast ID Figure7B_2014_4_17
Dataset Kind Image data
Dataset Size 53.6 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure7B_2014_5_28
# 6590
Datast ID Figure7B_2014_5_28
Dataset Kind Image data
Dataset Size 38.6 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure7B_2014_8_27
# 6591
Datast ID Figure7B_2014_8_27
Dataset Kind Image data
Dataset Size 55.8 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure7B_2016_6_6
# 6592
Datast ID Figure7B_2016_6_6
Dataset Kind Image data
Dataset Size 70.8 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure7B_2016_6_7
# 6593
Datast ID Figure7B_2016_6_7
Dataset Kind Image data
Dataset Size 60.0 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset FigureS3A_misalign_20150926_C-Mad2_EFcon
# 6594
Dataset Kind Image data
Dataset Size 195.0 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset FigureS3A_misalign_20150926_C-Mad2_Giant
# 6595
Dataset Kind Image data
Dataset Size 387.8 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset FigureS3A_misalign_20150928_C-Mad2_EFcon
# 6596
Dataset Kind Image data
Dataset Size 466.2 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset FigureS3A_misalign_20151002_C-Mad2_EFcon
# 6597
Dataset Kind Image data
Dataset Size 184.8 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset FigureS3A_misalign_20151002_C-Mad2_Giant
# 6598
Dataset Kind Image data
Dataset Size 757.2 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset FigureS3A_misalign_20151008_C-Mad2_EFcon
# 6599
Dataset Kind Image data
Dataset Size 155.9 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset FigureS3A_misalign_20151008_C-Mad2_EFconGV
# 6600
Dataset Kind Image data
Dataset Size 114.8 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset FigureS3A_misalign_20151008_C-Mad2_Giant
# 6601
Dataset Kind Image data
Dataset Size 1.4 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset FigureS3A_misalign_20151008_C-Mad2_GiantGV
# 6602
Dataset Kind Image data
Dataset Size 408.1 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset FigureS3A_misalign_20151021_C-Mad2_con
# 6603
Dataset Kind Image data
Dataset Size 1.3 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset FigureS3A_misalign_20151021_C-Mad2_half
# 6604
Dataset Kind Image data
Dataset Size 1.2 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset FigureS3A_misalign_20151024_C-Mad2_con1
# 6605
Dataset Kind Image data
Dataset Size 1.5 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset FigureS3A_misalign_20151024_C-Mad2_con2
# 6606
Dataset Kind Image data
Dataset Size 1.3 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset FigureS3A_misalign_20151024_C-Mad2_half1
# 6607
Dataset Kind Image data
Dataset Size 1.2 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset FigureS3A_misalign_20151024_C-Mad2_half2
# 6608
Dataset Kind Image data
Dataset Size 1.0 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset FigureS3A_misalign_20151209_C-Mad2_con
# 6609
Dataset Kind Image data
Dataset Size 714.4 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset FigureS3A_misalign_20151209_C-Mad2_half
# 6610
Dataset Kind Image data
Dataset Size 1.1 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset FigureS3A_misalign_20151210_C-Mad2_con
# 6611
Dataset Kind Image data
Dataset Size 1.5 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset FigureS3A_misalign_20151210_C-Mad2_half
# 6612
Dataset Kind Image data
Dataset Size 1.3 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset FigureS3A_misalign_20151221_C-Mad2_EFcon
# 6613
Dataset Kind Image data
Dataset Size 472.1 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset FigureS3A_misalign_20151221_C-Mad2_Giant
# 6614
Dataset Kind Image data
Dataset Size 272.8 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset FigureS3A_misalign_20160222_C-Mad2_con1_5h
# 6615
Dataset Kind Image data
Dataset Size 720.0 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset FigureS3A_misalign_20160222_C-Mad2_con2_5h
# 6616
Dataset Kind Image data
Dataset Size 699.5 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset FigureS3A_misalign_20160222_C-Mad2_half1_5h
# 6617
Dataset Kind Image data
Dataset Size 689.5 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset FigureS3A_misalign_20160222_C-Mad2_half2_5h
# 6618
Dataset Kind Image data
Dataset Size 685.2 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset FigureS3A_misalign_20160224_C-Mad2_EFcon1
# 6619
Dataset Kind Image data
Dataset Size 1.0 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset FigureS3A_misalign_20160224_C-Mad2_EFcon2
# 6620
Dataset Kind Image data
Dataset Size 1.5 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset FigureS3A_misalign_20160224_C-Mad2_Giant
# 6621
Dataset Kind Image data
Dataset Size 1.5 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset FigureS3A_misalign_20160224_C-Mad2_Giant2
# 6622
Dataset Kind Image data
Dataset Size 1.7 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset FigureS3A_misalign_20160225_C-Mad2_con3_5h
# 6623
Dataset Kind Image data
Dataset Size 1.3 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset FigureS3A_misalign_20160225_C-Mad2_half3h
# 6624
Dataset Kind Image data
Dataset Size 1.1 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset FigureS3A_misalign_20160321_ACA_con
# 6625
Dataset Kind Image data
Dataset Size 896.1 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset FigureS3A_misalign_20160321_ACA_half
# 6626
Dataset Kind Image data
Dataset Size 1.1 GB
4D view
SSBD:OMERO
Download BDML
Download Image data