No thumbnail

Summary of 42-Hayashi-NeuronalCellDyn


SSBD:database
SSBD:database URL

SSBD:repository
SSBD:repository URL

Title
BDML file for the tracking of an endosome retrogradely or anterogradely transported in the axon of a supracervical ganglion (SCG) neuron in vitro
Description
-
Release date
2019-11-20
Updated date
-
License
CC BY-NC-SA
Kind
Quantitative data based on Experiment
Number of Datasets
198 ( Image datasets: 0, Quantitative data datasets: 198 )
Size of Datasets
87.2 MB ( Image datasets: 0 bytes, Quantitative data datasets: 87.2 MB )

Organism(s)
Rattus norvegicus

Datatype
neuron cell dynamics
Molecular Function (MF)
Biological Process (BP)
axonal transport
Cellular Component (CC)
endosome
Biological Imaging Method
-
XYZ Scale
X: 1 micrometer, Y: NA, Z: NA
T scale
0.0102 second for each time interval

Image Acquisition
Experiment type
TimeLapse
Microscope type
FluorescenceMicroscope
Acquisition mode
WideField
Contrast method
Fluorescence
Microscope model
Olympus IX71
Detector model
Andor LucaS
Objective model
Olympus UPlanFL 100x/1.3
Filter set
Olympus WIG filter set

Related paper(s)

Kumiko Hayashi, Yuta Tsuchizawa, Mitsuhiro Iwaki, Yasushi Okada (2018) Application of the fluctuation theorem for noninvasive force measurement in living neuronal axons., Molecular biology of the cell, Volume 29, Number 25, pp. 3017-3025

Published in 2018 Dec 1 (Electronic publication in Oct. 3, 2018, midnight )

(Abstract) Although its importance is recently widely accepted, force measurement has been difficult in living biological systems, mainly due to the lack of the versatile noninvasive force measurement methods. The fluctuation theorem, which represents the thermodynamic properties of small fluctuating nonequilibrium systems, has been applied to the analysis of the thermodynamic properties of motor proteins in vitro. Here we extend it to the axonal transport (displacement) of endosomes. The distribution of the displacement fluctuation had three or four distinct peaks around multiples of a unit value, which the fluctuation theorem can convert into the drag force exerted on the endosomes. The results demonstrated that a single cargo vesicle is conveyed by one to three or four units of force production.
(MeSH Terms)

Contact
Yasushi Okada , RIKEN , Quantitative Biology Center , Laboratory for Cell Polarity Regulation
Contributors
Kumiko Hayashi, Yuta Tsuchizawa, Mitsuhiro Iwaki, Yasushi Okada

Dataset List of 42-Hayashi-NeuronalCellDyn

Thumbnail
#
Dataset ID
Kind
Size
4D View
SSBD:OMERO
Download BDML
Download Images
Thumbnail -
# 1086
Datast ID Fig5_retro-49
Dataset Kind Quantitative data
Dataset Size 882.2 KB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail -
# 1087
Datast ID Fig5_retro-50
Dataset Kind Quantitative data
Dataset Size 500.9 KB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail -
# 1088
Datast ID Fig5_retro-51
Dataset Kind Quantitative data
Dataset Size 486.1 KB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail -
# 1089
Datast ID Fig5_retro-52
Dataset Kind Quantitative data
Dataset Size 730.2 KB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail -
# 1090
Datast ID Fig5_retro-53
Dataset Kind Quantitative data
Dataset Size 514.3 KB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail -
# 1091
Datast ID Fig5_retro-54
Dataset Kind Quantitative data
Dataset Size 310.1 KB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail -
# 1092
Datast ID Fig5_retro-55
Dataset Kind Quantitative data
Dataset Size 410.5 KB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail -
# 1093
Datast ID Fig5_retro-56
Dataset Kind Quantitative data
Dataset Size 151.2 KB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail -
# 1094
Datast ID Fig5_retro-57
Dataset Kind Quantitative data
Dataset Size 263.4 KB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail -
# 1095
Datast ID Fig5_retro-58
Dataset Kind Quantitative data
Dataset Size 380.9 KB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail -
# 1096
Datast ID Fig5_retro-59
Dataset Kind Quantitative data
Dataset Size 517.0 KB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail -
# 1097
Datast ID Fig5_retro-60
Dataset Kind Quantitative data
Dataset Size 326.4 KB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail -
# 1098
Datast ID Fig5_retro-61
Dataset Kind Quantitative data
Dataset Size 378.5 KB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail -
# 1099
Datast ID Fig5_retro-62
Dataset Kind Quantitative data
Dataset Size 324.1 KB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail -
# 1100
Datast ID Fig5_retro-63
Dataset Kind Quantitative data
Dataset Size 371.2 KB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail -
# 1101
Datast ID Fig5_retro-64
Dataset Kind Quantitative data
Dataset Size 493.4 KB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail -
# 1102
Datast ID Fig5_retro-65
Dataset Kind Quantitative data
Dataset Size 514.3 KB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail -
# 1103
Datast ID Fig5_retro-66
Dataset Kind Quantitative data
Dataset Size 210.6 KB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail -
# 1104
Datast ID Fig5_retro-67
Dataset Kind Quantitative data
Dataset Size 338.3 KB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail -
# 1105
Datast ID Fig5_retro-68
Dataset Kind Quantitative data
Dataset Size 217.4 KB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail -
# 1106
Datast ID Fig5_retro-69
Dataset Kind Quantitative data
Dataset Size 338.3 KB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail -
# 1107
Datast ID Fig5_retro-70
Dataset Kind Quantitative data
Dataset Size 196.1 KB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail -
# 1108
Datast ID Fig5_retro-71
Dataset Kind Quantitative data
Dataset Size 286.5 KB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail -
# 1109
Datast ID Fig5_retro-72
Dataset Kind Quantitative data
Dataset Size 491.0 KB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail -
# 1110
Datast ID Fig5_retro-73
Dataset Kind Quantitative data
Dataset Size 284.2 KB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail -
# 1111
Datast ID Fig5_retro-74
Dataset Kind Quantitative data
Dataset Size 210.6 KB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail -
# 1112
Datast ID Fig5_retro-75
Dataset Kind Quantitative data
Dataset Size 302.8 KB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail -
# 1113
Datast ID Fig5_retro-76
Dataset Kind Quantitative data
Dataset Size 424.5 KB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail -
# 1114
Datast ID Fig5_retro-77
Dataset Kind Quantitative data
Dataset Size 246.3 KB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail -
# 1115
Datast ID Fig5_retro-78
Dataset Kind Quantitative data
Dataset Size 350.0 KB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail -
# 1116
Datast ID Fig5_retro-79
Dataset Kind Quantitative data
Dataset Size 185.0 KB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail -
# 1117
Datast ID Fig5_retro-80
Dataset Kind Quantitative data
Dataset Size 336.0 KB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail -
# 1118
Datast ID Fig5_retro-81
Dataset Kind Quantitative data
Dataset Size 201.1 KB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail -
# 1119
Datast ID Fig5_retro-82
Dataset Kind Quantitative data
Dataset Size 359.6 KB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail -
# 1120
Datast ID Fig5_retro-83
Dataset Kind Quantitative data
Dataset Size 175.1 KB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail -
# 1121
Datast ID Fig5_retro-84
Dataset Kind Quantitative data
Dataset Size 660.9 KB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail -
# 1122
Datast ID Fig5_retro-85
Dataset Kind Quantitative data
Dataset Size 227.7 KB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail -
# 1123
Datast ID Fig5_retro-86
Dataset Kind Quantitative data
Dataset Size 347.6 KB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail -
# 1124
Datast ID Fig5_retro-87
Dataset Kind Quantitative data
Dataset Size 162.9 KB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail -
# 1125
Datast ID Fig5_retro-88
Dataset Kind Quantitative data
Dataset Size 198.4 KB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail -
# 1126
Datast ID Fig5_retro-89
Dataset Kind Quantitative data
Dataset Size 398.5 KB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail -
# 1127
Datast ID Fig5_retro-90
Dataset Kind Quantitative data
Dataset Size 298.1 KB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail -
# 1128
Datast ID Fig5_retro-91
Dataset Kind Quantitative data
Dataset Size 394.4 KB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail -
# 1129
Datast ID Fig5_retro-92
Dataset Kind Quantitative data
Dataset Size 319.4 KB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail -
# 1130
Datast ID Fig5_retro-93
Dataset Kind Quantitative data
Dataset Size 141.6 KB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail -
# 1131
Datast ID Fig5_retro-94
Dataset Kind Quantitative data
Dataset Size 310.1 KB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail -
# 1132
Datast ID Fig5_retro-95
Dataset Kind Quantitative data
Dataset Size 234.7 KB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail -
# 1133
Datast ID Fig5_retro-96
Dataset Kind Quantitative data
Dataset Size 263.4 KB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail -
# 1134
Datast ID Fig5_retro-97
Dataset Kind Quantitative data
Dataset Size 376.2 KB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail -
# 1135
Datast ID Fig5_retro-98
Dataset Kind Quantitative data
Dataset Size 201.1 KB
4D view
SSBD:OMERO
Download BDML
Download Image data