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Summary of 42-Hayashi-NeuronalCellDyn


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SSBD:repository URL

Title
BDML file for the tracking of an endosome retrogradely or anterogradely transported in the axon of a supracervical ganglion (SCG) neuron in vitro
Description
-
Release date
2019-11-20
Updated date
-
License
CC BY-NC-SA
Kind
Quantitative data based on Experiment
Number of Datasets
198 ( Image datasets: 0, Quantitative data datasets: 198 )
Size of Datasets
87.2 MB ( Image datasets: 0 bytes, Quantitative data datasets: 87.2 MB )

Organism(s)
Rattus norvegicus

Datatype
neuron cell dynamics
Molecular Function (MF)
Biological Process (BP)
axonal transport
Cellular Component (CC)
endosome
Biological Imaging Method
-
XYZ Scale
X: 1 micrometer, Y: NA, Z: NA
T scale
0.0102 second for each time interval

Image Acquisition
Experiment type
TimeLapse
Microscope type
FluorescenceMicroscope
Acquisition mode
WideField
Contrast method
Fluorescence
Microscope model
Olympus IX71
Detector model
Andor LucaS
Objective model
Olympus UPlanFL 100x/1.3
Filter set
Olympus WIG filter set

Related paper(s)

Kumiko Hayashi, Yuta Tsuchizawa, Mitsuhiro Iwaki, Yasushi Okada (2018) Application of the fluctuation theorem for noninvasive force measurement in living neuronal axons., Molecular biology of the cell, Volume 29, Number 25, pp. 3017-3025

Published in 2018 Dec 1 (Electronic publication in Oct. 3, 2018, midnight )

(Abstract) Although its importance is recently widely accepted, force measurement has been difficult in living biological systems, mainly due to the lack of the versatile noninvasive force measurement methods. The fluctuation theorem, which represents the thermodynamic properties of small fluctuating nonequilibrium systems, has been applied to the analysis of the thermodynamic properties of motor proteins in vitro. Here we extend it to the axonal transport (displacement) of endosomes. The distribution of the displacement fluctuation had three or four distinct peaks around multiples of a unit value, which the fluctuation theorem can convert into the drag force exerted on the endosomes. The results demonstrated that a single cargo vesicle is conveyed by one to three or four units of force production.
(MeSH Terms)

Contact
Yasushi Okada , RIKEN , Quantitative Biology Center , Laboratory for Cell Polarity Regulation
Contributors
Kumiko Hayashi, Yuta Tsuchizawa, Mitsuhiro Iwaki, Yasushi Okada

Dataset List of 42-Hayashi-NeuronalCellDyn

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#
Dataset ID
Kind
Size
4D View
SSBD:OMERO
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# 1186
Datast ID Fig5_antero-32
Dataset Kind Quantitative data
Dataset Size 556.9 KB
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SSBD:OMERO
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# 1187
Datast ID Fig5_antero-33
Dataset Kind Quantitative data
Dataset Size 488.4 KB
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SSBD:OMERO
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# 1188
Datast ID Fig5_antero-34
Dataset Kind Quantitative data
Dataset Size 590.1 KB
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SSBD:OMERO
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# 1189
Datast ID Fig5_antero-35
Dataset Kind Quantitative data
Dataset Size 352.6 KB
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SSBD:OMERO
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# 1190
Datast ID Fig5_antero-36
Dataset Kind Quantitative data
Dataset Size 559.2 KB
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SSBD:OMERO
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# 1191
Datast ID Fig5_antero-37
Dataset Kind Quantitative data
Dataset Size 604.6 KB
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SSBD:OMERO
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# 1192
Datast ID Fig5_antero-38
Dataset Kind Quantitative data
Dataset Size 514.3 KB
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SSBD:OMERO
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# 1193
Datast ID Fig5_antero-39
Dataset Kind Quantitative data
Dataset Size 464.3 KB
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SSBD:OMERO
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# 1194
Datast ID Fig5_antero-40
Dataset Kind Quantitative data
Dataset Size 336.0 KB
4D view
SSBD:OMERO
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# 1195
Datast ID Fig5_antero-41
Dataset Kind Quantitative data
Dataset Size 630.8 KB
4D view
SSBD:OMERO
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# 1196
Datast ID Fig5_antero-42
Dataset Kind Quantitative data
Dataset Size 436.4 KB
4D view
SSBD:OMERO
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# 1197
Datast ID Fig5_antero-43
Dataset Kind Quantitative data
Dataset Size 462.0 KB
4D view
SSBD:OMERO
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# 1198
Datast ID Fig5_antero-44
Dataset Kind Quantitative data
Dataset Size 438.8 KB
4D view
SSBD:OMERO
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# 1199
Datast ID Fig5_antero-45
Dataset Kind Quantitative data
Dataset Size 436.4 KB
4D view
SSBD:OMERO
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# 1200
Datast ID Fig5_antero-46
Dataset Kind Quantitative data
Dataset Size 383.5 KB
4D view
SSBD:OMERO
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# 1201
Datast ID Fig5_antero-47
Dataset Kind Quantitative data
Dataset Size 533.3 KB
4D view
SSBD:OMERO
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# 1202
Datast ID Fig5_antero-48
Dataset Kind Quantitative data
Dataset Size 564.2 KB
4D view
SSBD:OMERO
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# 1203
Datast ID Fig5_antero-49
Dataset Kind Quantitative data
Dataset Size 305.4 KB
4D view
SSBD:OMERO
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# 1204
Datast ID Fig5_antero-50
Dataset Kind Quantitative data
Dataset Size 220.4 KB
4D view
SSBD:OMERO
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# 1205
Datast ID Fig5_antero-51
Dataset Kind Quantitative data
Dataset Size 260.9 KB
4D view
SSBD:OMERO
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# 1206
Datast ID Fig5_antero-52
Dataset Kind Quantitative data
Dataset Size 431.5 KB
4D view
SSBD:OMERO
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# 1207
Datast ID Fig5_antero-53
Dataset Kind Quantitative data
Dataset Size 215.0 KB
4D view
SSBD:OMERO
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# 1208
Datast ID Fig5_antero-54
Dataset Kind Quantitative data
Dataset Size 246.3 KB
4D view
SSBD:OMERO
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# 1209
Datast ID Fig5_antero-55
Dataset Kind Quantitative data
Dataset Size 244.0 KB
4D view
SSBD:OMERO
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# 1210
Datast ID Fig5_antero-56
Dataset Kind Quantitative data
Dataset Size 208.1 KB
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SSBD:OMERO
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# 1211
Datast ID Fig5_antero-57
Dataset Kind Quantitative data
Dataset Size 298.1 KB
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SSBD:OMERO
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# 1212
Datast ID Fig5_antero-58
Dataset Kind Quantitative data
Dataset Size 794.0 KB
4D view
SSBD:OMERO
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# 1213
Datast ID Fig5_antero-59
Dataset Kind Quantitative data
Dataset Size 429.1 KB
4D view
SSBD:OMERO
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# 1214
Datast ID Fig5_antero-60
Dataset Kind Quantitative data
Dataset Size 276.9 KB
4D view
SSBD:OMERO
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# 1215
Datast ID Fig5_antero-61
Dataset Kind Quantitative data
Dataset Size 388.2 KB
4D view
SSBD:OMERO
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# 1216
Datast ID Fig5_antero-62
Dataset Kind Quantitative data
Dataset Size 321.7 KB
4D view
SSBD:OMERO
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# 1217
Datast ID Fig5_antero-63
Dataset Kind Quantitative data
Dataset Size 284.2 KB
4D view
SSBD:OMERO
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# 1218
Datast ID Fig5_antero-64
Dataset Kind Quantitative data
Dataset Size 495.7 KB
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SSBD:OMERO
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# 1219
Datast ID Fig5_antero-65
Dataset Kind Quantitative data
Dataset Size 141.6 KB
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SSBD:OMERO
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# 1220
Datast ID Fig5_antero-66
Dataset Kind Quantitative data
Dataset Size 312.4 KB
4D view
SSBD:OMERO
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# 1221
Datast ID Fig5_antero-67
Dataset Kind Quantitative data
Dataset Size 185.0 KB
4D view
SSBD:OMERO
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# 1222
Datast ID Fig5_antero-68
Dataset Kind Quantitative data
Dataset Size 144.2 KB
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SSBD:OMERO
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# 1223
Datast ID Fig5_antero-69
Dataset Kind Quantitative data
Dataset Size 378.6 KB
4D view
SSBD:OMERO
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# 1224
Datast ID Fig5_antero-70
Dataset Kind Quantitative data
Dataset Size 388.2 KB
4D view
SSBD:OMERO
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# 1225
Datast ID Fig5_antero-71
Dataset Kind Quantitative data
Dataset Size 367.1 KB
4D view
SSBD:OMERO
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# 1226
Datast ID Fig5_antero-72
Dataset Kind Quantitative data
Dataset Size 215.0 KB
4D view
SSBD:OMERO
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# 1227
Datast ID Fig5_antero-73
Dataset Kind Quantitative data
Dataset Size 302.8 KB
4D view
SSBD:OMERO
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# 1228
Datast ID Fig5_antero-74
Dataset Kind Quantitative data
Dataset Size 276.9 KB
4D view
SSBD:OMERO
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# 1229
Datast ID Fig5_antero-75
Dataset Kind Quantitative data
Dataset Size 251.3 KB
4D view
SSBD:OMERO
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# 1230
Datast ID Fig5_antero-76
Dataset Kind Quantitative data
Dataset Size 281.8 KB
4D view
SSBD:OMERO
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# 1231
Datast ID Fig5_antero-77
Dataset Kind Quantitative data
Dataset Size 185.0 KB
4D view
SSBD:OMERO
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# 1232
Datast ID Fig5_antero-78
Dataset Kind Quantitative data
Dataset Size 172.5 KB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail -
# 1233
Datast ID Fig5_antero-79
Dataset Kind Quantitative data
Dataset Size 170.2 KB
4D view
SSBD:OMERO
Download BDML
Download Image data