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Summary of 42-Hayashi-NeuronalCellDyn


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SSBD:repository URL

Title
BDML file for the tracking of an endosome retrogradely or anterogradely transported in the axon of a supracervical ganglion (SCG) neuron in vitro
Description
-
Release date
2019-11-20
Updated date
-
License
CC BY-NC-SA
Kind
Quantitative data based on Experiment
Number of Datasets
198 ( Image datasets: 0, Quantitative data datasets: 198 )
Size of Datasets
87.2 MB ( Image datasets: 0 bytes, Quantitative data datasets: 87.2 MB )

Organism(s)
Rattus norvegicus

Datatype
neuron cell dynamics
Molecular Function (MF)
Biological Process (BP)
axonal transport
Cellular Component (CC)
endosome
Biological Imaging Method
-
XYZ Scale
X: 1 micrometer, Y: NA, Z: NA
T scale
0.0102 second for each time interval

Image Acquisition
Experiment type
TimeLapse
Microscope type
FluorescenceMicroscope
Acquisition mode
WideField
Contrast method
Fluorescence
Microscope model
Olympus IX71
Detector model
Andor LucaS
Objective model
Olympus UPlanFL 100x/1.3
Filter set
Olympus WIG filter set

Related paper(s)

Kumiko Hayashi, Yuta Tsuchizawa, Mitsuhiro Iwaki, Yasushi Okada (2018) Application of the fluctuation theorem for noninvasive force measurement in living neuronal axons., Molecular biology of the cell, Volume 29, Number 25, pp. 3017-3025

Published in 2018 Dec 1 (Electronic publication in Oct. 3, 2018, midnight )

(Abstract) Although its importance is recently widely accepted, force measurement has been difficult in living biological systems, mainly due to the lack of the versatile noninvasive force measurement methods. The fluctuation theorem, which represents the thermodynamic properties of small fluctuating nonequilibrium systems, has been applied to the analysis of the thermodynamic properties of motor proteins in vitro. Here we extend it to the axonal transport (displacement) of endosomes. The distribution of the displacement fluctuation had three or four distinct peaks around multiples of a unit value, which the fluctuation theorem can convert into the drag force exerted on the endosomes. The results demonstrated that a single cargo vesicle is conveyed by one to three or four units of force production.
(MeSH Terms)

Contact
Yasushi Okada , RIKEN , Quantitative Biology Center , Laboratory for Cell Polarity Regulation
Contributors
Kumiko Hayashi, Yuta Tsuchizawa, Mitsuhiro Iwaki, Yasushi Okada

Dataset List of 42-Hayashi-NeuronalCellDyn

Thumbnail
#
Dataset ID
Kind
Size
4D View
SSBD:OMERO
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# 1136
Datast ID Fig5_retro-99
Dataset Kind Quantitative data
Dataset Size 232.3 KB
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SSBD:OMERO
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# 1137
Datast ID Fig5_retro-100
Dataset Kind Quantitative data
Dataset Size 201.1 KB
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SSBD:OMERO
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# 1138
Datast ID Fig5_retro-101
Dataset Kind Quantitative data
Dataset Size 415.2 KB
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SSBD:OMERO
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# 1139
Datast ID Fig5_retro-102
Dataset Kind Quantitative data
Dataset Size 276.9 KB
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SSBD:OMERO
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# 1140
Datast ID Fig5_retro-103
Dataset Kind Quantitative data
Dataset Size 210.6 KB
4D view
SSBD:OMERO
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# 1141
Datast ID Fig5_retro-104
Dataset Kind Quantitative data
Dataset Size 237.5 KB
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SSBD:OMERO
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# 1142
Datast ID Fig5_retro-105
Dataset Kind Quantitative data
Dataset Size 371.2 KB
4D view
SSBD:OMERO
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# 1143
Datast ID Fig5_retro-106
Dataset Kind Quantitative data
Dataset Size 687.6 KB
4D view
SSBD:OMERO
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# 1144
Datast ID Fig5_retro-107
Dataset Kind Quantitative data
Dataset Size 385.9 KB
4D view
SSBD:OMERO
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# 1145
Datast ID Fig5_retro-108
Dataset Kind Quantitative data
Dataset Size 260.9 KB
4D view
SSBD:OMERO
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# 1146
Datast ID Fig5_retro-109
Dataset Kind Quantitative data
Dataset Size 191.4 KB
4D view
SSBD:OMERO
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# 1147
Datast ID Fig5_retro-110
Dataset Kind Quantitative data
Dataset Size 286.5 KB
4D view
SSBD:OMERO
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# 1148
Datast ID Fig5_retro-111
Dataset Kind Quantitative data
Dataset Size 441.1 KB
4D view
SSBD:OMERO
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# 1149
Datast ID Fig5_retro-112
Dataset Kind Quantitative data
Dataset Size 284.2 KB
4D view
SSBD:OMERO
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# 1150
Datast ID Fig5_retro-113
Dataset Kind Quantitative data
Dataset Size 312.4 KB
4D view
SSBD:OMERO
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# 1151
Datast ID Fig5_retro-114
Dataset Kind Quantitative data
Dataset Size 230.0 KB
4D view
SSBD:OMERO
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# 1152
Datast ID Fig5_retro-115
Dataset Kind Quantitative data
Dataset Size 595.1 KB
4D view
SSBD:OMERO
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# 1153
Datast ID Fig5_retro-116
Dataset Kind Quantitative data
Dataset Size 385.9 KB
4D view
SSBD:OMERO
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# 1154
Datast ID Fig5_retro-117
Dataset Kind Quantitative data
Dataset Size 398.6 KB
4D view
SSBD:OMERO
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# 1155
Datast ID Fig5_antero-1
Dataset Kind Quantitative data
Dataset Size 225.0 KB
4D view
SSBD:OMERO
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# 1156
Datast ID Fig5_antero-2
Dataset Kind Quantitative data
Dataset Size 336.0 KB
4D view
SSBD:OMERO
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# 1157
Datast ID Fig5_antero-3
Dataset Kind Quantitative data
Dataset Size 267.6 KB
4D view
SSBD:OMERO
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Thumbnail -
# 1158
Datast ID Fig5_antero-4
Dataset Kind Quantitative data
Dataset Size 656.7 KB
4D view
SSBD:OMERO
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Thumbnail -
# 1159
Datast ID Fig5_antero-5
Dataset Kind Quantitative data
Dataset Size 549.9 KB
4D view
SSBD:OMERO
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# 1160
Datast ID Fig5_antero-6
Dataset Kind Quantitative data
Dataset Size 471.6 KB
4D view
SSBD:OMERO
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# 1161
Datast ID Fig5_antero-7
Dataset Kind Quantitative data
Dataset Size 436.4 KB
4D view
SSBD:OMERO
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# 1162
Datast ID Fig5_antero-8
Dataset Kind Quantitative data
Dataset Size 654.2 KB
4D view
SSBD:OMERO
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# 1163
Datast ID Fig5_antero-9
Dataset Kind Quantitative data
Dataset Size 464.3 KB
4D view
SSBD:OMERO
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# 1164
Datast ID Fig5_antero-10
Dataset Kind Quantitative data
Dataset Size 362.3 KB
4D view
SSBD:OMERO
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# 1165
Datast ID Fig5_antero-11
Dataset Kind Quantitative data
Dataset Size 471.6 KB
4D view
SSBD:OMERO
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# 1166
Datast ID Fig5_antero-12
Dataset Kind Quantitative data
Dataset Size 424.5 KB
4D view
SSBD:OMERO
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Thumbnail -
# 1167
Datast ID Fig5_antero-13
Dataset Kind Quantitative data
Dataset Size 845.8 KB
4D view
SSBD:OMERO
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# 1168
Datast ID Fig5_antero-14
Dataset Kind Quantitative data
Dataset Size 616.0 KB
4D view
SSBD:OMERO
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# 1169
Datast ID Fig5_antero-15
Dataset Kind Quantitative data
Dataset Size 417.5 KB
4D view
SSBD:OMERO
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# 1170
Datast ID Fig5_antero-16
Dataset Kind Quantitative data
Dataset Size 697.0 KB
4D view
SSBD:OMERO
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# 1171
Datast ID Fig5_antero-17
Dataset Kind Quantitative data
Dataset Size 426.8 KB
4D view
SSBD:OMERO
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# 1172
Datast ID Fig5_antero-18
Dataset Kind Quantitative data
Dataset Size 649.2 KB
4D view
SSBD:OMERO
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# 1173
Datast ID Fig5_antero-19
Dataset Kind Quantitative data
Dataset Size 772.7 KB
4D view
SSBD:OMERO
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# 1174
Datast ID Fig5_antero-20
Dataset Kind Quantitative data
Dataset Size 1.1 MB
4D view
SSBD:OMERO
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Thumbnail -
# 1175
Datast ID Fig5_antero-21
Dataset Kind Quantitative data
Dataset Size 378.6 KB
4D view
SSBD:OMERO
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Thumbnail -
# 1176
Datast ID Fig5_antero-22
Dataset Kind Quantitative data
Dataset Size 526.5 KB
4D view
SSBD:OMERO
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# 1177
Datast ID Fig5_antero-23
Dataset Kind Quantitative data
Dataset Size 892.1 KB
4D view
SSBD:OMERO
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# 1178
Datast ID Fig5_antero-24
Dataset Kind Quantitative data
Dataset Size 782.3 KB
4D view
SSBD:OMERO
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# 1179
Datast ID Fig5_antero-25
Dataset Kind Quantitative data
Dataset Size 519.3 KB
4D view
SSBD:OMERO
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# 1180
Datast ID Fig5_antero-26
Dataset Kind Quantitative data
Dataset Size 564.2 KB
4D view
SSBD:OMERO
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# 1181
Datast ID Fig5_antero-27
Dataset Kind Quantitative data
Dataset Size 787.5 KB
4D view
SSBD:OMERO
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# 1182
Datast ID Fig5_antero-28
Dataset Kind Quantitative data
Dataset Size 542.9 KB
4D view
SSBD:OMERO
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Download Image data

Thumbnail -
# 1183
Datast ID Fig5_antero-29
Dataset Kind Quantitative data
Dataset Size 424.5 KB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail -
# 1184
Datast ID Fig5_antero-30
Dataset Kind Quantitative data
Dataset Size 498.0 KB
4D view
SSBD:OMERO
Download BDML
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# 1185
Datast ID Fig5_antero-31
Dataset Kind Quantitative data
Dataset Size 644.6 KB
4D view
SSBD:OMERO
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