Summary of 409-Ichimura-AMATERAS

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SSBD:repository URL

Title
Ultra-large FOV imaging by AMATERAS-2
Description
-
Release date
2025-11-26
Updated date
-
License
CC BY
Kind
Image data based on Experiment
Number of Datasets
7 ( Image datasets: 7, Quantitative data datasets: 0 )
Size of Datasets
633.7 GB ( Image datasets: 633.7 GB, Quantitative data datasets: 0 bytes )

Organism(s)
Coturnix japonica, Mus musculus, Homo sapiens
Strain(s)
C57BL/6J, Tg (tie1:H2B-eYFP)
Cell lines(s)
hiPSC line 201B7

Datatype
-
Molecular Function (MF)
-
Biological Process (BP)
cell migration, embryo development
Cellular Component (CC)
nucleus, actin cytoskeleton
Biological Imaging Method
AMATERAS-2w, AMATERAS-2c, fluorescence microscopy, AMATERAS-1, spinning disk confocal microscopy
T scale
7.5 minutes, NA

Image Acquisition
Experiment type
-
Microscope type
-
Acquisition mode
-
Contrast method
-
Microscope model
-
Detector model
-
Objective model
-
Filter set
-

Related paper(s)

Taro Ichimura, Taishi Kakizuka, Yoshitsugu Taniguchi, Satoshi Ejima, Yuki Sato, Keiko Itano, Kaoru Seiriki, Hitoshi Hashimoto, Ko Sugawara, Hiroya Itoga, Shuichi Onami, Takeharu Nagai (2025) Volumetric trans-scale imaging of massive quantity of heterogeneous cell populations in centimeter-wide tissue and embryo., eLife, Volume 13

Published in 2025 Feb 3 (Electronic publication in Feb. 3, 2025, midnight )

(Abstract) We established a volumetric trans-scale imaging system with an ultra-large field-of-view (FOV) that enables simultaneous observation of millions of cellular dynamics in centimeter-wide three-dimensional (3D) tissues and embryos. Using a custom-made giant lens system with a magnification of x2 and a numerical aperture (NA) of 0.25, and a CMOS camera with more than 100 megapixels, we built a trans-scale scope AMATERAS-2, and realized fluorescence imaging with a transverse spatial resolution of approximately 1.1 microm across an FOV of approximately 1.5x1.0 cm(2). The 3D resolving capability was realized through a combination of optical and computational sectioning techniques tailored for our low-power imaging system. We applied the imaging technique to 1.2 cm-wide section of mouse brain, and successfully observed various regions of the brain with sub-cellular resolution in a single FOV. We also performed time-lapse imaging of a 1-cm-wide vascular network during quail embryo development for over 24 hr, visualizing the movement of over 4.0x10(5) vascular endothelial cells and quantitatively analyzing their dynamics. Our results demonstrate the potential of this technique in accelerating production of comprehensive reference maps of all cells in organisms and tissues, which contributes to understanding developmental processes, brain functions, and pathogenesis of disease, as well as high-throughput quality check of tissues used for transplantation medicine.
(MeSH Terms)

Contact
Taro Ichimura, Takeharu Nagai , Osaka University, Osaka University , Institute for Open and Transdisciplinary Research Initiatives, Institute for Open and Transdisciplinary Research Initiatives , Institute for Open and Transdisciplinary Research Initiatives, Institute for Open and Transdisciplinary Research Initiatives
Contributors
Taishi Kakizuka, Yoshitsugu Taniguchi, Satoshi Ejima, Yuki Sato, Kaoru Seiriki, Hitoshi Hashimoto


Dataset List of 409-Ichimura-AMATERAS

#
Dataset ID
Kind
Size
4D View
SSBD:OMERO
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# 12861
Dataset Kind Image data
Dataset Size 234.9 MB
4D view
SSBD:OMERO
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# 12862
Datast ID Fig2E_CardiacSheet
Dataset Kind Image data
Dataset Size 116.1 MB
4D view
SSBD:OMERO
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# 12863
Datast ID Fig4_Hoechst
Dataset Kind Image data
Dataset Size 34.9 GB
4D view
SSBD:OMERO
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# 12864
Datast ID Fig4_Troponin
Dataset Kind Image data
Dataset Size 34.9 GB
4D view
SSBD:OMERO
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# 12865
Datast ID Fig5_Brain_2fold
Dataset Kind Image data
Dataset Size 42.9 GB
4D view
SSBD:OMERO
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# 12866
Datast ID Fig5_Brain_4fold
Dataset Kind Image data
Dataset Size 44.3 GB
4D view
SSBD:OMERO
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# 12867
Datast ID Fig6_QuailEmbyo
Dataset Kind Image data
Dataset Size 476.5 GB
4D view
SSBD:OMERO
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