Detail of Fig5_Brain_4fold

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Project
SSBD:Repository
Title
Z-series images of mouse brain stained with SYTOX-Green
Description
Z-series SYTOX-Green images of mouse brain obtained by AMATERAS2. The colonally cutted 1.5 mm brain section was chemically cleared using CUBIC, and the cell nuclei were stained with SYTOX-Green. The images were obtained with 4x magnification system, and the background intensity was removed by the computational sectioning.
Release, Updated
2025-11-26
License
CC BY
Kind
Image data
File Formats
.tif
Data size
44.3 GB

Organism
Mus musculus ( NCBI:txid10090 )
Strain(s)
C57BL/6J
Cell Line
-

Datatype
-
Molecular Function (MF)
Biological Process (BP)
Cellular Component (CC)
nucleus
Biological Imaging Method
spinning disk confocal microscopy ( Fbbi:00000253 )
AMATERAS-2c
X scale
0.55 micrometer
Y scale
0.55 micrometer
Z scale
4 micrometer
T scale
-

Image Acquisition
Experiment type
-
Microscope type
-
Acquisition mode
-
Contrast method
-
Microscope model
-
Detector model
-
Objective model
-
Filter set
-

Summary of Methods
Ichimura T, Kakizuka T, Taniguchi Y, Ejima S, Sato Y, Itano K, Seiriki K, Hashimoto H, Sugawara K, Itoga H, Onami S, Nagai T. Volumetric trans-scale imaging of massive quantity of heterogeneous cell populations in centimeter-wide tissue and embryo. Elife. 2025 Feb 3;13:RP93633
Related paper(s)

Taro Ichimura, Taishi Kakizuka, Yoshitsugu Taniguchi, Satoshi Ejima, Yuki Sato, Keiko Itano, Kaoru Seiriki, Hitoshi Hashimoto, Ko Sugawara, Hiroya Itoga, Shuichi Onami, Takeharu Nagai (2025) Volumetric trans-scale imaging of massive quantity of heterogeneous cell populations in centimeter-wide tissue and embryo., eLife, Volume 13

Published in 2025 Feb 3 (Electronic publication in Feb. 3, 2025, midnight )

(Abstract) We established a volumetric trans-scale imaging system with an ultra-large field-of-view (FOV) that enables simultaneous observation of millions of cellular dynamics in centimeter-wide three-dimensional (3D) tissues and embryos. Using a custom-made giant lens system with a magnification of x2 and a numerical aperture (NA) of 0.25, and a CMOS camera with more than 100 megapixels, we built a trans-scale scope AMATERAS-2, and realized fluorescence imaging with a transverse spatial resolution of approximately 1.1 microm across an FOV of approximately 1.5x1.0 cm(2). The 3D resolving capability was realized through a combination of optical and computational sectioning techniques tailored for our low-power imaging system. We applied the imaging technique to 1.2 cm-wide section of mouse brain, and successfully observed various regions of the brain with sub-cellular resolution in a single FOV. We also performed time-lapse imaging of a 1-cm-wide vascular network during quail embryo development for over 24 hr, visualizing the movement of over 4.0x10(5) vascular endothelial cells and quantitatively analyzing their dynamics. Our results demonstrate the potential of this technique in accelerating production of comprehensive reference maps of all cells in organisms and tissues, which contributes to understanding developmental processes, brain functions, and pathogenesis of disease, as well as high-throughput quality check of tissues used for transplantation medicine.
(MeSH Terms)

Contact
Taro Ichimura, Takeharu Nagai , Osaka University, Osaka University , Institute for Open and Transdisciplinary Research Initiatives, Institute for Open and Transdisciplinary Research Initiatives , Institute for Open and Transdisciplinary Research Initiatives, Institute for Open and Transdisciplinary Research Initiatives
Contributors
Taishi Kakizuka, Yoshitsugu Taniguchi, Satoshi Ejima, Yuki Sato, Kaoru Seiriki, Hitoshi Hashimoto

OMERO Dataset
OMERO Project
Source