337-Isoe-BrainRegion
Author reviewed3D medaka brain visualized clonally related units in the pallium
Project ID
337-Isoe-BrainRegion
Project SID
337
Title
3D medaka brain visualized clonally related units in the pallium
Description
The dorsal telencephalon (i.e. the pallium) exhibits high anatomical diversity across vertebrate classes. The non-mammalian dorsal pallium accommodates various compartmentalized structures among species. The developmental, functional, and evolutional diversity of the dorsal pallium remain unillustrated. Here, the authors analyzed the structure and epigenetic landscapes of cell lineages in the telencephalon of medaka fish (Oryzias latipes) that possesses a clearly delineated dorsal pallium (Dd2). They found that pallial anatomical regions, including Dd2, are formed by mutually exclusive clonal units, and that each pallium compartment exhibits a distinct epigenetic landscape.
Submission Date
2024-02-08
Opened Date
-
Release Date
2024-12-14
Update Date
-
Kind
Image datasets
License
Project URL
-
Project DOI
-
Metadata Version
-
Template Version
-
Funding Information
NIBB Collaborative Research Program 16-522 (HT), KAKENHI 16H06987 (YI), KAKENHI 16KT0072 (HT), KAKENHI 20K20303 (YK), JP21K06013 (RN), Grant-in-Aid for Scientific Research on Innovative Areas JP21H00245 (RN), 18-513 (HT), 17-513 (HT)
Total
182 files / 16.1 GB
Image datasets
zipped 89 files / 3.8 GB, raw image 93 files / 12.4 GB, total 182 files / 16.1 GB
Quantitative datasets
zipped 0 files / 0 bytes, raw bdml 0 files / 0 bytes, total 0 files / 0 bytes
Biosample
Organism
Oryzias latipes
(
NCBITaxon:8091
)
Oryzias latipes
(
NCBITaxon:8090
)
Strain
HuC:loxp-DsRed-loxp-GFP, HSP-Cre
Cell
neuron
(
CL:0000541
)
neuron
(
CL:0000540
)
Cell line
-
MeSH
Neurogenesis
Ontology
Anatomical Entity
-
UBERON
brain
(
UBERON:0000955
)
Biological Process
neurogenesis (GO:0022008), neuron migration
(
GO:0001764
)
Cellular Component
-
Molecular Function
-
Medical Subject Headings
Neurogenesis
Imaging Method
Method involved in biological imaging
light-sheet microscopy
Paper DOI / Paper URL
People
Contact
Yasuko Isoe
Harvard University
Department of Molecular and Cellular Biology
-
-
Imaging dataset contributor
Ryohei Nakamura (The University of Tokyo)
Quantitative dataset contributor
-
Image datasets
89
Quantitative datasets
0
Dataset List
Thumbnail
Dataset
Organism
Kind / Links
Z-stack images of horizontal section of medaka telencephalon visualizing units of GFP-positive cells, each of which has the same lineage
Z-stack images of horizontal section of medaka telencephalon visualizing units of GFP-positive cells, each of which has the same lineage
Z-stack images of horizontal section of medaka telencephalon visualizing units of GFP-positive cells, each of which has the same lineage
Z-stack images of horizontal section of medaka telencephalon visualizing units of GFP-positive cells, each of which has the same lineage
Z-stack images of horizontal section of medaka telencephalon visualizing units of GFP-positive cells, each of which has the same lineage
Z-stack images of horizontal section of medaka telencephalon visualizing units of GFP-positive cells, each of which has the same lineage
Z-stack images of horizontal section of medaka telencephalon visualizing units of GFP-positive cells, each of which has the same lineage
Z-stack images of horizontal section of medaka telencephalon visualizing units of GFP-positive cells, each of which has the same lineage
Z-stack images of horizontal section of medaka telencephalon visualizing units of GFP-positive cells, each of which has the same lineage
Z-stack images of horizontal section of medaka telencephalon visualizing units of GFP-positive cells, each of which has the same lineage
Z-stack images of horizontal section of medaka telencephalon visualizing units of GFP-positive cells, each of which has the same lineage
Z-stack images of horizontal section of medaka telencephalon visualizing units of GFP-positive cells, each of which has the same lineage
Z-stack images of horizontal section of medaka telencephalon visualizing units of GFP-positive cells, each of which has the same lineage
Z-stack images of horizontal section of medaka telencephalon visualizing units of GFP-positive cells, each of which has the same lineage
Z-stack images of horizontal section of medaka telencephalon visualizing units of GFP-positive cells, each of which has the same lineage
Z-stack images of horizontal section of medaka telencephalon visualizing units of GFP-positive cells, each of which has the same lineage
Z-stack images of horizontal section of medaka telencephalon visualizing units of GFP-positive cells, each of which has the same lineage
Z-stack images of horizontal section of medaka telencephalon visualizing units of GFP-positive cells, each of which has the same lineage
Z-stack images of horizontal section of medaka telencephalon visualizing units of GFP-positive cells, each of which has the same lineage
Z-stack images of horizontal section of medaka telencephalon visualizing units of GFP-positive cells, each of which has the same lineage
Z-stack images of horizontal section of medaka telencephalon visualizing units of GFP-positive cells, each of which has the same lineage
Z-stack images of horizontal section of medaka telencephalon visualizing units of GFP-positive cells, each of which has the same lineage
Z-stack images of horizontal section of medaka telencephalon visualizing units of GFP-positive cells, each of which has the same lineage
Z-stack images of horizontal section of medaka telencephalon visualizing units of GFP-positive cells, each of which has the same lineage
Z-stack images of horizontal section of medaka telencephalon visualizing units of GFP-positive cells, each of which has the same lineage
Z-stack images of horizontal section of medaka telencephalon visualizing units of GFP-positive cells, each of which has the same lineage
Z-stack images of horizontal section of medaka telencephalon visualizing units of GFP-positive cells, each of which has the same lineage
Z-stack images of horizontal section of medaka telencephalon visualizing units of GFP-positive cells, each of which has the same lineage
Z-stack images of horizontal section of medaka telencephalon visualizing units of GFP-positive cells, each of which has the same lineage
Z-stack images of horizontal section of medaka telencephalon visualizing units of GFP-positive cells, each of which has the same lineage
Z-stack images of horizontal section of medaka telencephalon visualizing units of GFP-positive cells, each of which has the same lineage
Z-stack images of horizontal section of medaka telencephalon visualizing units of GFP-positive cells, each of which has the same lineage
Z-stack images of horizontal section of medaka telencephalon visualizing units of GFP-positive cells, each of which has the same lineage
Z-stack images of horizontal section of medaka telencephalon visualizing units of GFP-positive cells, each of which has the same lineage
Z-stack images of horizontal section of medaka telencephalon visualizing units of GFP-positive cells, each of which has the same lineage
Z-stack images of horizontal section of medaka telencephalon visualizing units of GFP-positive cells, each of which has the same lineage
Z-stack images of horizontal section of medaka telencephalon visualizing units of GFP-positive cells, each of which has the same lineage
Z-stack images of horizontal section of medaka telencephalon visualizing units of GFP-positive cells, each of which has the same lineage
Z-stack images of horizontal section of medaka telencephalon visualizing units of GFP-positive cells, each of which has the same lineage
Z-stack images of horizontal section of medaka telencephalon visualizing units of GFP-positive cells, each of which has the same lineage
Z-stack images of horizontal section of medaka telencephalon visualizing units of GFP-positive cells, each of which has the same lineage
Z-stack images of horizontal section of medaka telencephalon visualizing units of GFP-positive cells, each of which has the same lineage
Z-stack images of horizontal section of medaka telencephalon visualizing units of GFP-positive cells, each of which has the same lineage
Z-stack images of horizontal section of medaka telencephalon visualizing units of GFP-positive cells, each of which has the same lineage
Z-stack images of horizontal section of medaka telencephalon visualizing units of GFP-positive cells, each of which has the same lineage
Z-stack images of horizontal section of medaka telencephalon visualizing units of GFP-positive cells, each of which has the same lineage
Z-stack images of horizontal section of medaka telencephalon visualizing units of GFP-positive cells, each of which has the same lineage
Z-stack images of horizontal section of medaka telencephalon visualizing units of GFP-positive cells, each of which has the same lineage
Z-stack images of horizontal section of medaka telencephalon visualizing units of GFP-positive cells, each of which has the same lineage
Z-stack images of horizontal section of medaka telencephalon visualizing units of GFP-positive cells, each of which has the same lineage
Z-stack images of horizontal section of medaka telencephalon visualizing units of GFP-positive cells, each of which has the same lineage
Z-stack images of horizontal section of medaka telencephalon visualizing units of GFP-positive cells, each of which has the same lineage
Z-stack images of horizontal section of medaka telencephalon visualizing units of GFP-positive cells, each of which has the same lineage
Z-stack images of horizontal section of medaka telencephalon visualizing units of GFP-positive cells, each of which has the same lineage
Z-stack images of horizontal section of medaka telencephalon visualizing units of GFP-positive cells, each of which has the same lineage
Z-stack images of horizontal section of medaka telencephalon visualizing units of GFP-positive cells, each of which has the same lineage
Z-stack images of horizontal section of medaka telencephalon visualizing units of GFP-positive cells, each of which has the same lineage
Z-stack images of horizontal section of medaka telencephalon visualizing units of GFP-positive cells, each of which has the same lineage
Z-stack images of horizontal section of medaka telencephalon visualizing units of GFP-positive cells, each of which has the same lineage
Z-stack images of horizontal section of medaka telencephalon visualizing units of GFP-positive cells, each of which has the same lineage
Z-stack images of horizontal section of medaka telencephalon visualizing units of GFP-positive cells, each of which has the same lineage
Z-stack images of horizontal section of medaka telencephalon visualizing units of GFP-positive cells, each of which has the same lineage
Z-stack images of horizontal section of medaka telencephalon visualizing units of GFP-positive cells, each of which has the same lineage
Z-stack images of horizontal section of medaka telencephalon visualizing units of GFP-positive cells, each of which has the same lineage
Z-stack images of horizontal section of medaka telencephalon visualizing units of GFP-positive cells, each of which has the same lineage
Z-stack images of horizontal section of medaka telencephalon visualizing units of GFP-positive cells, each of which has the same lineage
Z-stack images of horizontal section of medaka telencephalon visualizing units of GFP-positive cells, each of which has the same lineage
Z-stack images of horizontal section of medaka telencephalon visualizing units of GFP-positive cells, each of which has the same lineage
Z-stack images of horizontal section of medaka telencephalon visualizing units of GFP-positive cells, each of which has the same lineage
Z-stack images of horizontal section of medaka telencephalon visualizing units of GFP-positive cells, each of which has the same lineage
Z-stack images of horizontal section of medaka telencephalon visualizing units of GFP-positive cells, each of which has the same lineage
Z-stack images of horizontal section of medaka telencephalon visualizing units of GFP-positive cells, each of which has the same lineage
Z-stack images of horizontal section of medaka telencephalon visualizing units of GFP-positive cells, each of which has the same lineage
Z-stack images of horizontal section of medaka telencephalon visualizing units of GFP-positive cells, each of which has the same lineage
Z-stack images of horizontal section of medaka telencephalon visualizing units of GFP-positive cells, each of which has the same lineage
Z-stack images of horizontal section of medaka telencephalon visualizing units of GFP-positive cells, each of which has the same lineage
Z-stack images of horizontal section of medaka telencephalon visualizing units of GFP-positive cells, each of which has the same lineage
Z-stack images of horizontal section of medaka telencephalon visualizing units of GFP-positive cells, each of which has the same lineage
Z-stack images of horizontal section of medaka telencephalon visualizing units of GFP-positive cells, each of which has the same lineage
Z-stack images of horizontal section of medaka telencephalon visualizing units of GFP-positive cells, each of which has the same lineage
Z-stack images of horizontal section of medaka telencephalon visualizing units of GFP-positive cells, each of which has the same lineage
Z-stack images of horizontal section of medaka telencephalon visualizing units of GFP-positive cells, each of which has the same lineage
Z-stack images of horizontal section of medaka telencephalon visualizing units of GFP-positive cells, each of which has the same lineage
Z-stack images of horizontal section of medaka telencephalon visualizing units of GFP-positive cells, each of which has the same lineage
Z-stack images of horizontal section of medaka telencephalon visualizing units of GFP-positive cells, each of which has the same lineage
Z-stack images of horizontal section of medaka telencephalon visualizing units of GFP-positive cells, each of which has the same lineage
Z-stack images of horizontal section of the reference medaka brain stained with DAPI
Z-stack images of medaka brain that visualize clonally related units in the pallium
Z-stack images of medaka brain that visualize clonally related units in the subpallium