SSBD:database

Project

Dataset ID

Brain_86_left

Kind

Image data

Title

Z-stack images of horizontal section of medaka telencephalon visualizing units of GFP-positive cells, each of which has the same lineage

Description

Z-series images of medaka brain obtained by light sheet microscopy that visualize clonally related units in the pallium. This transgenic line express fluorescent protein under HuC promoter, which drives expression in neural progenitor cells. As the reporter GFP was expressed in neural progenitor cells at the neurula stage (stage 16–17) by Cre-loxp recombination system, we can trace the lineage in the adult fish. We can see some GFP-positive clonally related compartments that distribute exclusively in one anatomical region but not across many anatomical regions. DsRed (channel1), GFP (channel2), and DAPI staining (channel3). The two datasets, Brain_86_left and Brain_86_right, were derived from the same brain sample, but obtained by individual imaging sessions.

Folder Name

Brain_86_left

File Format

.tif

File Size

421MB

File Separation Method

-

Figure Number

Figure1D

Dimensions

1131x569x218x3x1

X Scale

-

Y Scale

-

Z Scale

-

T Scale

-

Channel

3 channel

Quantitative Data

-

Description

The medaka brain deriverd from two transgenic lines. One is the transgenic line (Tg (HuC:loxp-DsRed-loxp-GFP)) that visualized neural progenitors by the HuC promoter. The second is a line (Tg (HSP-Cre)) that expresses Cre recombinase under the heat shock protein promoter. In the absence of the recombination, DsRed is expressed in the neural progenitor cells. When Cre-loxp recombination is induced the neural progenitors express GFP instead of DsRed.

Organism

Strain

HuC:loxp-DsRed-loxp-GFP, HSP-Cre

Cell

neuron (CL:0000541)

Cell line

-

MeSH

Intrinsic Variable

Two transgenic medaka lines. One is the transgenic line (Tg (HuC:loxp-DsRed-loxp-GFP)) that visualized neural progenitors by the HuC promoter. The second is a line (Tg (HSP-Cre)) that expresses Cre recombinase under the heat shock protein promoter.

Extrinsic Variable

-

Anatomical Entity

-

UBERON

-

Biological Process

-

Cellular Component

-

Molecular Function

-

MeSH Anatomy

MeSH BP

MeSH CC

MeSH MF

Imaging Method

Detection Method

-

Visualization Method

expression of fluorescient protein & DAPI staining

Illumination Method

light-sheet illumination (FBbi:00000364)

Source of Contrast

distribution of a specific protein

Imaged Parameter

fluorescence emission

Sample Preparation Method

whole mounted tissue

MeSH

Body

custom made

Module

Zeiss leight sheet z1

Light Source

Zeiss leight sheet z1

Detector

-

Objective

Zeiss leight sheet z1

Filter Set

Zeiss leight sheet z16

Dichroic

-