Happy holidays and happy new year!
We are pleased to announce SSBD:database 2025 update.
We released 33 projects in 2025, which include 1640 image datasets (5.9TiB).
The added projects/datasets have already been announced on https://x.com/ssbd_en .
Again, we thank the contributors for their valuable data.
The released projects are:
https://ssbd.riken.jp/database/232-Tany-SignalingDyn
Live-cell imaging of G-protein-coupled receptors (GPCRs) downstream signaling dynamics in HeLa cells. (9.8 GiB)
https://ssbd.riken.jp/database/284-Mashiko-EmbryoDyn
Live-cell imaging and BDML file for quantitative information about nucleus dynamics in mouse embryo development. (2.2 TiB)
https://ssbd.riken.jp/database/292-Katsuta-StressFiber
Time-lapse images showing the pivotal role of alpha-actinin which generates mechanical force in stress fibers (20.9 GiB)
https://ssbd.riken.jp/database/310-Sato-HemocyteMigrate
Aquaporin overexpression promotes endothelial-to-hematopoietic transition. (22.5 GiB)
https://ssbd.riken.jp/database/320-Spratt-dMetRaman
Stimulated Raman images of deuterated methionine incorporated into adult and larval Drosophila (31.4 MiB)
https://ssbd.riken.jp/database/327-Okuzumi-synuclein
TEM images of alpha-synuclein released in serum (462.2 MiB)
https://ssbd.riken.jp/database/329-Nelson-Chemotaxis
Ammonium chemotaxis
of Chlamydomonas reinhardtii (463.9 MiB)
https://ssbd.riken.jp/database/333-Tsugawa-gravitropism
Shoot gravitropism of wild type and myosin xif xik mutant Arabidopsis (1.1 GiB)
https://ssbd.riken.jp/database/367-Tsuboi-DrosophilaWing
The folding dynamics of Drosophila wing during pupal development (353.0 GiB)
https://ssbd.riken.jp/database/368-Yabushita-Decitabine
Time-lapse images of MDS-derived AML cell lines treated with decitabine (26.6 GiB)
https://ssbd.riken.jp/database/369-Moriyama-deuterateRaman
Multiple deuteration of triphenylphosphine and live-cell Raman imaging
of deuterium-incorporated Mito-Q (152.3 KiB)
https://ssbd.riken.jp/database/371-Liao-RamanSpectra
Raman spectra data of cell spheroids on a multi-well plate treated with various concentrations of reagents (1.3 MiB)
https://ssbd.riken.jp/database/373-Tomioka-CaImage
Calcium imaging of ASEL gustatory neuron of C. elagans in response to glucose after conditioning (4.7 GiB)
https://ssbd.riken.jp/database/377-Ichinose-RedAlgae
Beta-tubulin dynamics during cell cycles of red algae (930.3 MiB)
https://ssbd.riken.jp/database/379-Okubo-bilaminoid
3D images of bilaminar organoid generated from co-culture of human pluripotent stem cells (hPSC) and hPSC-derived hypoblast-like cells (1.9 GiB)
https://ssbd.riken.jp/database/383-Hiromoto-PoralizeDiv
Time-lapse images of intracellular structure in elongating Arabidopsis zygotes (8.4 GiB)
https://ssbd.riken.jp/database/385-Yamakoshi-thiaMichael
Raman images showing thia-Michael reaction in HeLa cells (1.0 MiB)
https://ssbd.riken.jp/database/386-Takahashi-EarIL31RA
Immunofluorescence images of nerve fiber and IL-31 receptors in the mouse ear skin (3.5 GiB)
https://ssbd.riken.jp/database/387-Ando-StayGold
Super resolution cellular images using fluorescent-tags of StayGold variants (153.6 GiB)
https://ssbd.riken.jp/database/388-Okuno-CFinput
Climbing fiber inputs to Purkinje cells in wild type mice and PTPdelta knockout mice (7.0 GiB)
https://ssbd.riken.jp/database/393-Fujimoto-CoV2Infect
SARS-CoV-2 infection to the co-culture of bronchial organoids and vascular beds in a microfluidic device (2.0 GiB)
https://ssbd.riken.jp/database/394-Fukute-DNAunderwind
Mechanical regulation of DNA underwinding in the nucleus (8.2 GiB)
https://ssbd.riken.jp/database/398-Hirashima-LungMorpho
Spatio-temporal activation of ERK during branching morphogenesis in lung (14.5 GiB)
https://ssbd.riken.jp/database/408-Sarper-TentacleArrange
Z-series and time-lapse images showing phyllotaxis-like periodic and symmetric tentacle arrangements (263.0 GiB)
https://ssbd.riken.jp/database/409-Ichimura-AMATERAS
Ultra-large FOV imaging by AMATERAS-2 (633.7 GiB)
https://ssbd.riken.jp/database/411-Yoshinari-BorateTransporter
3D-time-lapse images of vacuolar sorting of BOR1 (397.1 MiB)
https://ssbd.riken.jp/database/412-Katoh-BMP4Cilia
BMP4 regulates asymmetric Pkd2 distribution in mouse nodal immotile cilia and ciliary mechanosensing required for left–right determination (48.9 GiB)
https://ssbd.riken.jp/database/416-Otomo-descSPIM
Images of brain and xenograft obtained by descSPIM, the desktop- equipped SPIM (348.6 GiB)
https://ssbd.riken.jp/database/419-Hagiwara-CollectiveMigrate
Time-lapse images of collective cell migration regulated by extracellular matrix (8.3 GiB)
https://ssbd.riken.jp/database/421-Takenouchi-AgedYoungOocyte
Live chromosome identifying and tracking in mouse oocytes (624.7 GiB)
https://ssbd.riken.jp/database/422-Asai-KinetochoreBeads
Dynamics of chromosomes and artificial kinetochore beads in mouse oocytes and embryos (1.2 TiB)
https://ssbd.riken.jp/database/439-Takayama-dynamicsEGFR
EGFR dynamics on CHO–K1 cells with depletion and supplementation of cholesterol (506.3 MiB)
https://ssbd.riken.jp/database/451-Hitora-Neopetromin
The shape of vacuole and F-actin in tobacco BY-2 cells treated with neopetromin, a newly found peptide (619.2 MiB)