SSBD:database

Thumbnail for 296-Kawabata-MouseBrainShape

Summary of 296-Kawabata-MouseBrainShape

SSBD:database
296-Kawabata-MouseBrainShape
SSBD:database URL
https://ssbd.riken.jp/database/296-Kawabata-MouseBrainShape/
DOI
https://doi.org/10.24631/ssbd.db.2023.05.296
SSBD:repository
ssbd-repos-000296
SSBD:repository URL
https://ssbd.riken.jp/repository/296/
Title
Image processing and manual annotation data of mouse brains with neurogenic-tagged neurons from NeuroGT database
Description
Segmentation results of brain contours and tagged neurons for 168 imaging data sets provided from NeuroGT database and manual annotation data of anatomical regions (isocortex, olfactory area, hippocampal formation, cerebral nuclei, interbrain, midbrain, hindbrain, and cerebellum) for images (131 images for the G2AN_TM11.5_L dataset and 10 images each for the other datasets) targeted mouse brains for evaluation
Release date
2023-05-09
Updated date
2023-05-29
Errata
2023/05/29 All BDML/BD5 data was updated cause of some format error in BD5
License
CC BY
Kind
Quantitative data based on Experiment
Number of Datasets
168 ( Image datasets: 0, Quantitative data datasets: 168 )
Size of Datasets
100.2 GB ( Image datasets: 0 bytes, Quantitative data datasets: 100.2 GB )
Organism(s)
Mus musculus
Strain(s)
C57BL/6 Neurod1^{CreER}(D1B); Tau^{mGFP-nLacZ}, C57BL/6 neuroG2^{CreER}(G2A); Tau^{mGFP-nLacZ}, C57BL/6 Neurod4^{CreER}(D4A); Tau^{mGFP-nLacZ}, C57BL/6 Neurog1^{CreER}(G1C); Tau^{mGFP-nLacZ}
Datatype
-
Molecular Function (MF)
Biological Process (BP)
nervous system development
Cellular Component (CC)
neuron projection, plasma membrane
Biological Imaging Method
chemically fixed tissue, horseradish peroxidase, bright-field microscopy, cryostat-sectioned tissue
X scale
1.0 micrometer/pixel
Y scale
1.0 micrometer/pixel
Z scale
20 micrometer/slice
T scale
-
Image Acquisition
Experiment type
-
Microscope type
-
Acquisition mode
-
Contrast method
-
Microscope model
-
Detector model
-
Objective model
-
Filter set
-
Related paper(s)
Contact
Yukako Tohsato , Ritsumeikan University , Faculty of Information Science and Engineering , Laboratory of compubational biology
Contributors
Hiroto Kawabata, Yuki Shimojo, Tatsumi Hirata, Yukako Tohsato

Dataset List of 296-Kawabata-MouseBrainShape

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#
Dataset ID
Kind
Size
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Thumbnail Thumbnail for dataset ManualAnnotation_D1BN_TM17.5_G
# 10597
Datast ID ManualAnnotation_D1BN_TM17.5_G
Dataset Kind Quantitative data
Dataset Size 33.5 MB
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Thumbnail Thumbnail for dataset ManualAnnotation_D1BN_TM17.5_L
# 10598
Datast ID ManualAnnotation_D1BN_TM17.5_L
Dataset Kind Quantitative data
Dataset Size 28.0 MB
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Thumbnail Thumbnail for dataset ManualAnnotation_D1BN_woTM_G
# 10599
Datast ID ManualAnnotation_D1BN_woTM_G
Dataset Kind Quantitative data
Dataset Size 28.8 MB
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Thumbnail Thumbnail for dataset ManualAnnotation_D1BN_woTM_L
# 10600
Datast ID ManualAnnotation_D1BN_woTM_L
Dataset Kind Quantitative data
Dataset Size 26.1 MB
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Thumbnail Thumbnail for dataset ManualAnnotation_D4AN_TM8.5_G
# 10601
Datast ID ManualAnnotation_D4AN_TM8.5_G
Dataset Kind Quantitative data
Dataset Size 31.3 MB
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Thumbnail Thumbnail for dataset ManualAnnotation_D4AN_TM8.5_L
# 10602
Datast ID ManualAnnotation_D4AN_TM8.5_L
Dataset Kind Quantitative data
Dataset Size 33.6 MB
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Thumbnail Thumbnail for dataset ManualAnnotation_D4AN_TM9.5_G
# 10603
Datast ID ManualAnnotation_D4AN_TM9.5_G
Dataset Kind Quantitative data
Dataset Size 30.2 MB
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Thumbnail Thumbnail for dataset ManualAnnotation_D4AN_TM9.5_L
# 10604
Datast ID ManualAnnotation_D4AN_TM9.5_L
Dataset Kind Quantitative data
Dataset Size 26.8 MB
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Thumbnail Thumbnail for dataset ManualAnnotation_D4AN_TM10.5_G
# 10605
Datast ID ManualAnnotation_D4AN_TM10.5_G
Dataset Kind Quantitative data
Dataset Size 26.8 MB
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Thumbnail Thumbnail for dataset ManualAnnotation_D4AN_TM10.5_L
# 10606
Datast ID ManualAnnotation_D4AN_TM10.5_L
Dataset Kind Quantitative data
Dataset Size 34.5 MB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset ManualAnnotation_D4AN_TM11.5_G
# 10607
Datast ID ManualAnnotation_D4AN_TM11.5_G
Dataset Kind Quantitative data
Dataset Size 33.1 MB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset ManualAnnotation_D4AN_TM11.5_L
# 10608
Datast ID ManualAnnotation_D4AN_TM11.5_L
Dataset Kind Quantitative data
Dataset Size 33.4 MB
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Thumbnail Thumbnail for dataset ManualAnnotation_D4AN_TM12.5_G
# 10609
Datast ID ManualAnnotation_D4AN_TM12.5_G
Dataset Kind Quantitative data
Dataset Size 42.1 MB
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Thumbnail Thumbnail for dataset ManualAnnotation_D4AN_TM12.5_L
# 10610
Datast ID ManualAnnotation_D4AN_TM12.5_L
Dataset Kind Quantitative data
Dataset Size 22.0 MB
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Thumbnail Thumbnail for dataset ManualAnnotation_D4AN_TM13.5_G
# 10611
Datast ID ManualAnnotation_D4AN_TM13.5_G
Dataset Kind Quantitative data
Dataset Size 31.5 MB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset ManualAnnotation_D4AN_TM13.5_L
# 10612
Datast ID ManualAnnotation_D4AN_TM13.5_L
Dataset Kind Quantitative data
Dataset Size 33.6 MB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset ManualAnnotation_D4AN_TM14.5_G
# 10613
Datast ID ManualAnnotation_D4AN_TM14.5_G
Dataset Kind Quantitative data
Dataset Size 35.8 MB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset ManualAnnotation_D4AN_TM14.5_L
# 10614
Datast ID ManualAnnotation_D4AN_TM14.5_L
Dataset Kind Quantitative data
Dataset Size 39.2 MB
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Thumbnail Thumbnail for dataset ManualAnnotation_D4AN_TM15.5_G
# 10615
Datast ID ManualAnnotation_D4AN_TM15.5_G
Dataset Kind Quantitative data
Dataset Size 27.0 MB
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Thumbnail Thumbnail for dataset ManualAnnotation_D4AN_TM15.5_L
# 10616
Datast ID ManualAnnotation_D4AN_TM15.5_L
Dataset Kind Quantitative data
Dataset Size 30.1 MB
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Thumbnail Thumbnail for dataset ManualAnnotation_D4AN_TM16.5_G
# 10617
Datast ID ManualAnnotation_D4AN_TM16.5_G
Dataset Kind Quantitative data
Dataset Size 25.7 MB
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Thumbnail Thumbnail for dataset ManualAnnotation_D4AN_TM16.5_L
# 10618
Datast ID ManualAnnotation_D4AN_TM16.5_L
Dataset Kind Quantitative data
Dataset Size 29.4 MB
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Thumbnail Thumbnail for dataset ManualAnnotation_D4AN_TM17.5_G
# 10619
Datast ID ManualAnnotation_D4AN_TM17.5_G
Dataset Kind Quantitative data
Dataset Size 23.8 MB
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Thumbnail Thumbnail for dataset ManualAnnotation_D4AN_TM17.5_L
# 10620
Datast ID ManualAnnotation_D4AN_TM17.5_L
Dataset Kind Quantitative data
Dataset Size 27.8 MB
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Thumbnail Thumbnail for dataset ManualAnnotation_D4AN_woTM_G
# 10621
Datast ID ManualAnnotation_D4AN_woTM_G
Dataset Kind Quantitative data
Dataset Size 32.9 MB
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Thumbnail Thumbnail for dataset ManualAnnotation_D4AN_woTM_L
# 10622
Datast ID ManualAnnotation_D4AN_woTM_L
Dataset Kind Quantitative data
Dataset Size 36.8 MB
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Thumbnail Thumbnail for dataset ManualAnnotation_G1CN_TM9.5_G
# 10623
Datast ID ManualAnnotation_G1CN_TM9.5_G
Dataset Kind Quantitative data
Dataset Size 26.7 MB
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Thumbnail Thumbnail for dataset ManualAnnotation_G1CN_TM9.5_L
# 10624
Datast ID ManualAnnotation_G1CN_TM9.5_L
Dataset Kind Quantitative data
Dataset Size 27.8 MB
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Thumbnail Thumbnail for dataset ManualAnnotation_G1CN_TM10.5_G
# 10625
Datast ID ManualAnnotation_G1CN_TM10.5_G
Dataset Kind Quantitative data
Dataset Size 35.7 MB
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Thumbnail Thumbnail for dataset ManualAnnotation_G1CN_TM10.5_L
# 10626
Datast ID ManualAnnotation_G1CN_TM10.5_L
Dataset Kind Quantitative data
Dataset Size 32.0 MB
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Thumbnail Thumbnail for dataset ManualAnnotation_G1CN_TM11.5_G
# 10627
Datast ID ManualAnnotation_G1CN_TM11.5_G
Dataset Kind Quantitative data
Dataset Size 32.2 MB
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Thumbnail Thumbnail for dataset ManualAnnotation_G1CN_TM11.5_L
# 10628
Datast ID ManualAnnotation_G1CN_TM11.5_L
Dataset Kind Quantitative data
Dataset Size 31.1 MB
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Thumbnail Thumbnail for dataset ManualAnnotation_G1CN_TM12.5_G
# 10629
Datast ID ManualAnnotation_G1CN_TM12.5_G
Dataset Kind Quantitative data
Dataset Size 28.6 MB
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Thumbnail Thumbnail for dataset ManualAnnotation_G1CN_TM12.5_L
# 10630
Datast ID ManualAnnotation_G1CN_TM12.5_L
Dataset Kind Quantitative data
Dataset Size 30.0 MB
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Thumbnail Thumbnail for dataset ManualAnnotation_G1CN_TM13.5_G
# 10631
Datast ID ManualAnnotation_G1CN_TM13.5_G
Dataset Kind Quantitative data
Dataset Size 36.7 MB
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Thumbnail Thumbnail for dataset ManualAnnotation_G1CN_TM13.5_L
# 10632
Datast ID ManualAnnotation_G1CN_TM13.5_L
Dataset Kind Quantitative data
Dataset Size 27.7 MB
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Thumbnail Thumbnail for dataset ManualAnnotation_G1CN_TM14.5_G
# 10633
Datast ID ManualAnnotation_G1CN_TM14.5_G
Dataset Kind Quantitative data
Dataset Size 29.5 MB
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Thumbnail Thumbnail for dataset ManualAnnotation_G1CN_TM14.5_L
# 10634
Datast ID ManualAnnotation_G1CN_TM14.5_L
Dataset Kind Quantitative data
Dataset Size 29.3 MB
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Thumbnail Thumbnail for dataset ManualAnnotation_G1CN_TM15.5_G
# 10635
Datast ID ManualAnnotation_G1CN_TM15.5_G
Dataset Kind Quantitative data
Dataset Size 33.6 MB
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Thumbnail Thumbnail for dataset ManualAnnotation_G1CN_TM15.5_L
# 10636
Datast ID ManualAnnotation_G1CN_TM15.5_L
Dataset Kind Quantitative data
Dataset Size 24.0 MB
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Thumbnail Thumbnail for dataset ManualAnnotation_G1CN_TM16.5_G
# 10637
Datast ID ManualAnnotation_G1CN_TM16.5_G
Dataset Kind Quantitative data
Dataset Size 32.3 MB
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Thumbnail Thumbnail for dataset ManualAnnotation_G1CN_TM16.5_L
# 10638
Datast ID ManualAnnotation_G1CN_TM16.5_L
Dataset Kind Quantitative data
Dataset Size 29.9 MB
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Thumbnail Thumbnail for dataset ManualAnnotation_G1CN_TM17.5_G
# 10639
Datast ID ManualAnnotation_G1CN_TM17.5_G
Dataset Kind Quantitative data
Dataset Size 38.3 MB
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Thumbnail Thumbnail for dataset ManualAnnotation_G1CN_TM17.5_L
# 10640
Datast ID ManualAnnotation_G1CN_TM17.5_L
Dataset Kind Quantitative data
Dataset Size 35.5 MB
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Thumbnail Thumbnail for dataset ManualAnnotation_G1CN_woTM_G
# 10641
Datast ID ManualAnnotation_G1CN_woTM_G
Dataset Kind Quantitative data
Dataset Size 33.4 MB
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Thumbnail Thumbnail for dataset ManualAnnotation_G1CN_woTM_L
# 10642
Datast ID ManualAnnotation_G1CN_woTM_L
Dataset Kind Quantitative data
Dataset Size 38.5 MB
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Thumbnail Thumbnail for dataset ManualAnnotation_G2AN_TM9.5_G
# 10643
Datast ID ManualAnnotation_G2AN_TM9.5_G
Dataset Kind Quantitative data
Dataset Size 26.6 MB
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Thumbnail Thumbnail for dataset ManualAnnotation_G2AN_TM9.5_L
# 10644
Datast ID ManualAnnotation_G2AN_TM9.5_L
Dataset Kind Quantitative data
Dataset Size 29.9 MB
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Thumbnail Thumbnail for dataset ManualAnnotation_G2AN_TM10.5_G
# 10645
Datast ID ManualAnnotation_G2AN_TM10.5_G
Dataset Kind Quantitative data
Dataset Size 31.5 MB
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Thumbnail Thumbnail for dataset ManualAnnotation_G2AN_TM10.5_L
# 10646
Datast ID ManualAnnotation_G2AN_TM10.5_L
Dataset Kind Quantitative data
Dataset Size 24.5 MB
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