Summary of 72-Kyogoku-CytoplasmNucDyn


SSBD:database
SSBD:database URL

SSBD:repository
SSBD:repository URL

Title
Timelapse images and BDML file for quantitative information about the cytoplasmic size affecting nuclear dynamics during mouse oocytes meiosis
Description
-
Release date
2021-11-30
Updated date
-
License
CC BY
Kind
Image data based on Experiment
Number of Datasets
453 ( Image datasets: 453, Quantitative data datasets: 0 )
Size of Datasets
6.7 TB ( Image datasets: 6.7 TB, Quantitative data datasets: 0 bytes )

Organism(s)
Mus musculus
Gene symbol(s)
C-Mad2, Hec-1, Hec1
Protein name(s)
ACA, Aurora B/C, CENP-C, CENP-E, H2B, MCAK, Securin
Protein tag(s)
2mNeonGreen, EGFP, mCherry, mNeonGreen, mNeonGreen. mCherry

Datatype
-
Molecular Function (MF)
-
Biological Process (BP)
cytoplasm organization, nuclear envelope breakdown, mitotic cell cycle
Cellular Component (CC)
chromosome, kinetochore microtubule
Biological Imaging Method
time lapse microscopy, fluorescence microscopy
X scale
0.0527153 micrometer/pixel, 0.1037832 micrometer/pixel, 0.1037832 micrometer/pixel, 0.0922518 micrometer/pixel, 0.2075665 micrometer/pixel, 0.0691888 micrometer/pixel, 0.4151329 micrometer/pixel, 0.0415133 micrometer/pixel, 0.0638666 micrometer/pixel, 0.0593047 micrometer/pixel, 0.1383776 micrometer/pixel, 0.1186094 micrometer/pixel, 0.1660532 micrometer/pixel, 0.0830266 micrometer/pixel
Y scale
0.0527153 micrometer/pixel, 0.1037832 micrometer/pixel, 0.1037832 micrometer/pixel, 0.0922518 micrometer/pixel, 0.2075665 micrometer/pixel, 0.0691888 micrometer/pixel, 0.4151329 micrometer/pixel, 0.0415133 micrometer/pixel, 0.0638666 micrometer/pixel, 0.0593047 micrometer/pixel, 0.1383776 micrometer/pixel, 0.1186094 micrometer/pixel, 0.1660532 micrometer/pixel, 0.0830266 micrometer/pixel
Z scale
1 micrometer/slice, 4 micrometer/slice, 0.3791020 micrometer/slice, 0.5 micrometer/slice, 0.3125801 micrometer/slice, 1.5 micrometer/slice
T scale
2 minutes for each time interval, 3 minutes for each time interval, 6 minutes for each time interval, NA, 5 minutes for each time interval, 1 minute for each time interval

Image Acquisition
Experiment type
-
Microscope type
-
Acquisition mode
-
Contrast method
-
Microscope model
-
Detector model
-
Objective model
-
Filter set
-

Related paper(s)

Hirohisa Kyogoku, Tomoya S Kitajima (2017) Large Cytoplasm Is Linked to the Error-Prone Nature of Oocytes., Developmental cell, Volume 41, Number 3, pp. 287-298.e4

Published in 2017 May 8

(Abstract) Chromosome segregation during meiosis in oocytes is error prone. The uniquely large cytoplasmic size of oocytes, which provides support for embryogenesis after fertilization, might be a predisposing factor for meiotic errors. However, this hypothesis remains unproven. Here, we show that cytoplasmic size affects the functionality of the acentrosomal spindle. Artificially decreasing the cytoplasmic size in mouse oocytes allows the acentrosomal spindle poles to have a better-focused distribution of microtubule-organizing centers and to biorient chromosomes more efficiently, whereas enlargement of the cytoplasmic size has the opposite effects. Moreover, we found that the cytoplasmic size-dependent dilution of nuclear factors, including anaphase inhibitors that are preformed at the nuclear membrane, limits the spindle's capacity to prevent anaphase entry with misaligned chromosomes. The present study defines a large cytoplasmic volume as a cell-intrinsic feature linked to the error-prone nature of oocytes. This may represent a trade-off between meiotic fidelity and post-fertilization developmental competence.
(MeSH Terms)

Contact
Tomoya S. Kitajima , RIKEN , Center for Biosystems Dynamics Research , Laboratory for Chromosome Segregation
Contributors
NA

Dataset List of 72-Kyogoku-CytoplasmNucDyn

Thumbnail
#
Dataset ID
Kind
Size
4D View
SSBD:OMERO
Download BDML
Download Images
Thumbnail Thumbnail for dataset FigureS4_20160408_EFcon_GV
# 6727
Dataset Kind Image data
Dataset Size 391.6 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset FigureS4_20160408_Giant
# 6728
Dataset Kind Image data
Dataset Size 309.7 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset FigureS4_20160408_Giant_GV
# 6729
Dataset Kind Image data
Dataset Size 342.4 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset FigureS4_201601182_con2_5h
# 6730
Dataset Kind Image data
Dataset Size 904.4 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset FigureS4_201601182_con3_5h
# 6731
Dataset Kind Image data
Dataset Size 736.4 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset FigureS4_201601182_half2h
# 6732
Dataset Kind Image data
Dataset Size 738.8 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset FigureS4_201601182_half3h
# 6733
Dataset Kind Image data
Dataset Size 658.8 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset FigureS4_kinetochore_CENPA_20161022_con
# 6734
Dataset Kind Image data
Dataset Size 790.4 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset FigureS4_kinetochore_CENPA_20161022_half
# 6735
Dataset Kind Image data
Dataset Size 637.2 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset FigureS4_kinetochore_CENPA_20161024_EFcon
# 6736
Dataset Kind Image data
Dataset Size 503.7 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset FigureS4_kinetochore_CENPA_20161024_Giant
# 6737
Dataset Kind Image data
Dataset Size 557.9 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset FigureS4_kinetochore_CENPC_20161022_con
# 6738
Dataset Kind Image data
Dataset Size 697.5 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset FigureS4_kinetochore_CENPC_20161022_half
# 6739
Dataset Kind Image data
Dataset Size 583.0 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset FigureS4_kinetochore_CENPC_20161024_EFcon
# 6740
Dataset Kind Image data
Dataset Size 471.2 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset FigureS4_kinetochore_CENPC_20161024_Giant
# 6741
Dataset Kind Image data
Dataset Size 533.1 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset FigureS4_kinetochore_CENPC_20161031_con1
# 6742
Dataset Kind Image data
Dataset Size 643.2 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset FigureS4_kinetochore_CENPC_20161031_con2
# 6743
Dataset Kind Image data
Dataset Size 520.6 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset FigureS4_kinetochore_CENPC_20161031_half1
# 6744
Dataset Kind Image data
Dataset Size 544.2 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset FigureS4_kinetochore_CENPC_20161031_half2
# 6745
Dataset Kind Image data
Dataset Size 352.1 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset FigureS4_kinetochore_CENPC_20161104_EFcon
# 6746
Dataset Kind Image data
Dataset Size 520.9 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset FigureS4_kinetochore_CENPC_20161104_Giant
# 6747
Dataset Kind Image data
Dataset Size 929.8 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset FigureS4_kinetochore_CENPC_20161106_EFcon
# 6748
Dataset Kind Image data
Dataset Size 413.8 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset FigureS4_kinetochore_CENPC_20161106_Giant
# 6749
Dataset Kind Image data
Dataset Size 988.6 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset FigureS4_kinetochore_CENPE_20170305_con
# 6750
Dataset Kind Image data
Dataset Size 660.3 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset FigureS4_kinetochore_CENPE_20170305_half
# 6751
Dataset Kind Image data
Dataset Size 666.6 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset FigureS4_kinetochore_CENPE_20170308_con
# 6752
Dataset Kind Image data
Dataset Size 1012.9 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset FigureS4_kinetochore_CENPE_20170308_EFcon
# 6753
Dataset Kind Image data
Dataset Size 1015.0 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset FigureS4_kinetochore_CENPE_20170308_Giant
# 6754
Dataset Kind Image data
Dataset Size 676.7 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset FigureS4_kinetochore_CENPE_20170308_half
# 6755
Dataset Kind Image data
Dataset Size 775.5 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset FigureS4_kinetochore_CENPE_20170309_con
# 6756
Dataset Kind Image data
Dataset Size 695.1 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset FigureS4_kinetochore_CENPE_20170309_doubled
# 6757
Dataset Kind Image data
Dataset Size 584.4 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset FigureS4_kinetochore_CENPE_20170309_EFcon
# 6758
Dataset Kind Image data
Dataset Size 824.2 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset FigureS4_kinetochore_CENPE_20170309_half
# 6759
Dataset Kind Image data
Dataset Size 730.4 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset FigureS4_kinetochore_CENPE_20170310_con
# 6760
Dataset Kind Image data
Dataset Size 1.1 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset FigureS4_kinetochore_CENPE_20170310_doubled
# 6761
Dataset Kind Image data
Dataset Size 580.3 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset FigureS4_kinetochore_CENPE_20170310_EFcon
# 6762
Dataset Kind Image data
Dataset Size 1.1 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset FigureS4_kinetochore_CENPE_20170310_half
# 6763
Dataset Kind Image data
Dataset Size 997.1 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset FigureS4_kinetochore_CENPE_20170313_doubled1
# 6764
Dataset Kind Image data
Dataset Size 287.2 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset FigureS4_kinetochore_CENPE_20170313_doubled2
# 6765
Dataset Kind Image data
Dataset Size 488.0 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset FigureS4_kinetochore_CENPE_20170313_EFcon1
# 6766
Dataset Kind Image data
Dataset Size 451.3 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset FigureS4_kinetochore_CENPE_20170313_EFcon2
# 6767
Dataset Kind Image data
Dataset Size 719.8 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset FigureS4_kinetochore_Hec1_20161022_con
# 6768
Dataset Kind Image data
Dataset Size 906.6 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset FigureS4_kinetochore_Hec1_20161022_half
# 6769
Dataset Kind Image data
Dataset Size 426.5 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset FigureS4_kinetochore_Hec1_20161024_EFcon
# 6770
Dataset Kind Image data
Dataset Size 578.1 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset FigureS4_kinetochore_Hec1_20161024_Giant
# 6771
Dataset Kind Image data
Dataset Size 743.7 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset FigureS4_kinetochore_Hec1_20161031_con1
# 6772
Dataset Kind Image data
Dataset Size 610.8 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset FigureS4_kinetochore_Hec1_20161031_con2
# 6773
Dataset Kind Image data
Dataset Size 409.3 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset FigureS4_kinetochore_Hec1_20161031_half1
# 6774
Dataset Kind Image data
Dataset Size 511.7 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset FigureS4_kinetochore_Hec1_20161031_half2
# 6775
Dataset Kind Image data
Dataset Size 440.4 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset FigureS4_kinetochore_Hec1_20161104_EFcon
# 6776
Dataset Kind Image data
Dataset Size 565.7 MB
4D view
SSBD:OMERO
Download BDML
Download Image data