SSBD:database

Thumbnail for 139-Kishimoto-TracheaDev

Summary of 139-Kishimoto-TracheaDev

SSBD:database
139-Kishimoto-TracheaDev
SSBD:database URL
https://ssbd.riken.jp/database/139-Kishimoto-TracheaDev/
SSBD:repository
ssbd-repos-000139
SSBD:repository URL
https://ssbd.riken.jp/repository/139/
Title
Image data of trachea and esophagus formation in the mouse embryo
Description
-
Release date
2024-11-25
Updated date
-
License
CC BY
Kind
Image data based on Experiment
Number of Datasets
85 ( Image datasets: 85, Quantitative data datasets: 0 )
Size of Datasets
5.3 GB ( Image datasets: 5.3 GB, Quantitative data datasets: 0 bytes )
Organism(s)
Mus musculus
Datatype
-
Molecular Function (MF)
Biological Process (BP)
branching morphogenesis of an epithelial tube
Cellular Component (CC)
cytoskeleton, nucleus
Biological Imaging Method
confocal microscopy, multi-photon microscopy, scanning electron microscopy, time lapse microscopy
X scale
7.8948 micrometer/pixel, 1.3284 micrometer/pixel, 2.6607 micrometer/pixel, 0.319149 micrometer/pixel, 0.5271531 micrometer/pixel, 4.0323 micrometer/pixel, 0.8302658　micrometer/pixel, 9.901 micrometer/pixel, NA, 13.5026 micrometer/pixel, 0.2635765 micrometer/pixel, 0.3275111 micrometer/pixel, 3.1646 micrometer/pixel, 0.4385965 micrometer/pixel, 0.415 micrometer/pixel, 0.3333333 micrometer/pixel, 3.1746 micrometer/pixel, 10.0 micrometer/pixel, 0.3321064 micrometer/pixel, 0.3321063　micrometer/pixel, 0.6642131 micrometer/pixel, 0.326087 micrometer/pixel, 0.3322259 micrometer/pixel, 6.3573 micrometer/pixel, 5.0125 micrometer/pixel, 3.2051 micrometer/pixel, 2.6569 micrometer/pixel
Y scale
7.8948 micrometer/pixel, 1.3284 micrometer/pixel, 2.6607 micrometer/pixel, 0.319149 micrometer/pixel, 0.5271531 micrometer/pixel, 4.0323 micrometer/pixel, 0.8302658　micrometer/pixel, 9.901 micrometer/pixel, NA, 13.5026 micrometer/pixel, 0.2635765 micrometer/pixel, 0.3275111 micrometer/pixel, 3.1646 micrometer/pixel, 0.4385965 micrometer/pixel, 0.415 micrometer/pixel, 0.3333333 micrometer/pixel, 3.1746 micrometer/pixel, 10.0 micrometer/pixel, 0.3321064 micrometer/pixel, 0.3321063　micrometer/pixel, 0.6642131 micrometer/pixel, 0.326087 micrometer/pixel, 0.3322259 micrometer/pixel, 6.3573 micrometer/pixel, 5.0125 micrometer/pixel, 3.2051 micrometer/pixel, 2.6569 micrometer/pixel
Z scale
1 micrometer/slice, 1.2895111　micrometer/pixel, 2 micrometer/slice, 3.4529906　micrometer/pixel, 1 micrometer/pixel, NA
T scale
NA, 1 hour per time interval
Image Acquisition
Experiment type
-
Microscope type
-
Acquisition mode
-
Contrast method
-
Microscope model
-
Detector model
-
Objective model
-
Filter set
-
Related paper(s)
Contact
Mitsuru Morimoto , RIKEN , Center for Biosystems Dynamics Research , Laboratory for Lung Development
Contributors

Dataset List of 139-Kishimoto-TracheaDev

Thumbnail
#
Dataset ID
Kind
Size
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SSBD:OMERO
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Thumbnail Thumbnail for dataset figure1B_trachea_E10.5
# 11593
Datast ID figure1B_trachea_E10.5
Dataset Kind Image data
Dataset Size 237.1 KB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset figure1B_trachea_E11.5
# 11594
Datast ID figure1B_trachea_E11.5
Dataset Kind Image data
Dataset Size 227.0 KB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset figure1B_trachea_E12.5
# 11595
Datast ID figure1B_trachea_E12.5
Dataset Kind Image data
Dataset Size 541.2 KB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset figure1B_trachea_E13.5
# 11596
Datast ID figure1B_trachea_E13.5
Dataset Kind Image data
Dataset Size 600.8 KB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset figure1B_trachea_E14.5
# 11597
Datast ID figure1B_trachea_E14.5
Dataset Kind Image data
Dataset Size 391.3 KB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset figure1B_trachea_E15.5
# 11598
Datast ID figure1B_trachea_E15.5
Dataset Kind Image data
Dataset Size 323.0 KB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset figure1B_trachea_E16.5
# 11599
Datast ID figure1B_trachea_E16.5
Dataset Kind Image data
Dataset Size 292.1 KB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset figure1B_trachea_E17.5
# 11600
Datast ID figure1B_trachea_E17.5
Dataset Kind Image data
Dataset Size 236.5 KB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset figure1B_trachea_E18.5
# 11601
Datast ID figure1B_trachea_E18.5
Dataset Kind Image data
Dataset Size 245.7 KB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset figure1J_BrDU_trachea_E14.5
# 11602
Datast ID figure1J_BrDU_trachea_E14.5
Dataset Kind Image data
Dataset Size 55.0 KB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset figure1J_BrDU_trachea_E16.5
# 11603
Datast ID figure1J_BrDU_trachea_E16.5
Dataset Kind Image data
Dataset Size 82.7 KB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Figure3A_E10.5_KO
# 11604
Datast ID Figure3A_E10.5_KO
Dataset Kind Image data
Dataset Size 728.1 KB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Figure3A_E10.5_WT
# 11605
Datast ID Figure3A_E10.5_WT
Dataset Kind Image data
Dataset Size 728.1 KB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Figure3A_E11.5_KO
# 11606
Datast ID Figure3A_E11.5_KO
Dataset Kind Image data
Dataset Size 802.8 KB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Figure3A_E11.5_WT
# 11607
Datast ID Figure3A_E11.5_WT
Dataset Kind Image data
Dataset Size 802.8 KB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Figure3A_E12.5_KO
# 11608
Datast ID Figure3A_E12.5_KO
Dataset Kind Image data
Dataset Size 1.6 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Figure3A_E12.5_WT
# 11609
Datast ID Figure3A_E12.5_WT
Dataset Kind Image data
Dataset Size 1.6 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Figure3A_E18.5_KO
# 11610
Datast ID Figure3A_E18.5_KO
Dataset Kind Image data
Dataset Size 298.2 KB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Figure3A_E18.5_WT
# 11611
Datast ID Figure3A_E18.5_WT
Dataset Kind Image data
Dataset Size 298.2 KB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Figure4H_Wnt5a_KO
# 11612
Datast ID Figure4H_Wnt5a_KO
Dataset Kind Image data
Dataset Size 600.8 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Figure4H_Wnt5a_WT
# 11613
Datast ID Figure4H_Wnt5a_WT
Dataset Kind Image data
Dataset Size 600.8 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Figure5I_wnt5a_WT_anterior
# 11614
Datast ID Figure5I_wnt5a_WT_anterior
Dataset Kind Image data
Dataset Size 760.3 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Figure5I_wnt5a_WT_Gut1
# 11615
Datast ID Figure5I_wnt5a_WT_Gut1
Dataset Kind Image data
Dataset Size 892.3 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Figure5I_wnt5a_WT_stomach
# 11616
Datast ID Figure5I_wnt5a_WT_stomach
Dataset Kind Image data
Dataset Size 384.2 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Figure5J_wnt5a_KO_anterior
# 11617
Datast ID Figure5J_wnt5a_KO_anterior
Dataset Kind Image data
Dataset Size 568.2 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Figure5J_wnt5a_KO_Gut1
# 11618
Datast ID Figure5J_wnt5a_KO_Gut1
Dataset Kind Image data
Dataset Size 1.1 GB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Figure5J_wnt5a_KO_stomach
# 11619
Datast ID Figure5J_wnt5a_KO_stomach
Dataset Kind Image data
Dataset Size 376.2 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset FigureS1A_Brdu_E12.5
# 11620
Datast ID FigureS1A_Brdu_E12.5
Dataset Kind Image data
Dataset Size 157.4 KB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset FigureS1A_Brdu_E14.5
# 11621
Datast ID FigureS1A_Brdu_E14.5
Dataset Kind Image data
Dataset Size 324.2 KB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset FigureS1A_Brdu_E16.5
# 11622
Datast ID FigureS1A_Brdu_E16.5
Dataset Kind Image data
Dataset Size 480.9 KB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset FigureS1A_Brdu_E18.5
# 11623
Datast ID FigureS1A_Brdu_E18.5
Dataset Kind Image data
Dataset Size 614.4 KB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset FigureS1A_Brdu_P10
# 11624
Datast ID FigureS1A_Brdu_P10
Dataset Kind Image data
Dataset Size 1.4 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset FigureS1B_pHH3_E12.5
# 11625
Datast ID FigureS1B_pHH3_E12.5
Dataset Kind Image data
Dataset Size 4.5 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset FigureS1B_pHH3_E13.5
# 11626
Datast ID FigureS1B_pHH3_E13.5
Dataset Kind Image data
Dataset Size 5.1 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset FigureS1B_pHH3_E14.5
# 11627
Datast ID FigureS1B_pHH3_E14.5
Dataset Kind Image data
Dataset Size 8.0 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset FigureS1B_pHH3_E15.0
# 11628
Datast ID FigureS1B_pHH3_E15.0
Dataset Kind Image data
Dataset Size 12.5 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset FigureS1B_pHH3_E15.5
# 11629
Datast ID FigureS1B_pHH3_E15.5
Dataset Kind Image data
Dataset Size 9.6 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset FigureS1B_pHH3_E16.0
# 11630
Datast ID FigureS1B_pHH3_E16.0
Dataset Kind Image data
Dataset Size 14.2 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset FigureS1B_pHH3_E16.5
# 11631
Datast ID FigureS1B_pHH3_E16.5
Dataset Kind Image data
Dataset Size 20.3 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset FigureS1B_pHH3_E17.5
# 11632
Datast ID FigureS1B_pHH3_E17.5
Dataset Kind Image data
Dataset Size 15.3 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset FigureS4D_KO_cartilage
# 11633
Datast ID FigureS4D_KO_cartilage
Dataset Kind Image data
Dataset Size 496.8 KB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset FigureS4D_WT_cartilage
# 11634
Datast ID FigureS4D_WT_cartilage
Dataset Kind Image data
Dataset Size 522.6 KB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset FigureS12A_control_E12.5_Dorsal
# 11635
Datast ID FigureS12A_control_E12.5_Dorsal
Dataset Kind Image data
Dataset Size 144.2 KB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset FigureS12A_control_E12.5_Ventral
# 11636
Datast ID FigureS12A_control_E12.5_Ventral
Dataset Kind Image data
Dataset Size 120.2 KB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset FigureS12A_control_E14.5_Dorsal
# 11637
Datast ID FigureS12A_control_E14.5_Dorsal
Dataset Kind Image data
Dataset Size 220.1 KB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset FigureS12A_control_E14.5_Ventral
# 11638
Datast ID FigureS12A_control_E14.5_Ventral
Dataset Kind Image data
Dataset Size 213.9 KB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset FigureS12A_control_E16.5_Dorsal
# 11639
Datast ID FigureS12A_control_E16.5_Dorsal
Dataset Kind Image data
Dataset Size 371.7 KB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset FigureS12A_control_E16.5_Ventral
# 11640
Datast ID FigureS12A_control_E16.5_Ventral
Dataset Kind Image data
Dataset Size 365.6 KB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset FigureS12A_control_E18.5_Dorsal
# 11641
Datast ID FigureS12A_control_E18.5_Dorsal
Dataset Kind Image data
Dataset Size 454.3 KB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset FigureS12A_control_E18.5_Ventral
# 11642
Datast ID FigureS12A_control_E18.5_Ventral
Dataset Kind Image data
Dataset Size 448.2 KB
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SSBD:OMERO
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