Summary of 139-Kishimoto-TracheaDev


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Title
Image data of trachea and esophagus formation in the mouse embryo
Description
-
Release date
2024-11-25
Updated date
-
License
CC BY
Kind
Image data based on Experiment
Number of Datasets
85 ( Image datasets: 85, Quantitative data datasets: 0 )
Size of Datasets
5.3 GB ( Image datasets: 5.3 GB, Quantitative data datasets: 0 bytes )

Organism(s)
Mus musculus

Datatype
-
Molecular Function (MF)
Biological Process (BP)
branching morphogenesis of an epithelial tube
Cellular Component (CC)
cytoskeleton, nucleus
Biological Imaging Method
confocal microscopy, multi-photon microscopy, scanning electron microscopy, time lapse microscopy
X scale
7.8948 micrometer/pixel, 1.3284 micrometer/pixel, 2.6607 micrometer/pixel, 0.319149 micrometer/pixel, 0.5271531 micrometer/pixel, 4.0323 micrometer/pixel, 0.8302658 micrometer/pixel, 9.901 micrometer/pixel, NA, 13.5026 micrometer/pixel, 0.2635765 micrometer/pixel, 0.3275111 micrometer/pixel, 3.1646 micrometer/pixel, 0.4385965 micrometer/pixel, 0.415 micrometer/pixel, 0.3333333 micrometer/pixel, 3.1746 micrometer/pixel, 10.0 micrometer/pixel, 0.3321064 micrometer/pixel, 0.3321063 micrometer/pixel, 0.6642131 micrometer/pixel, 0.326087 micrometer/pixel, 0.3322259 micrometer/pixel, 6.3573 micrometer/pixel, 5.0125 micrometer/pixel, 3.2051 micrometer/pixel, 2.6569 micrometer/pixel
Y scale
7.8948 micrometer/pixel, 1.3284 micrometer/pixel, 2.6607 micrometer/pixel, 0.319149 micrometer/pixel, 0.5271531 micrometer/pixel, 4.0323 micrometer/pixel, 0.8302658 micrometer/pixel, 9.901 micrometer/pixel, NA, 13.5026 micrometer/pixel, 0.2635765 micrometer/pixel, 0.3275111 micrometer/pixel, 3.1646 micrometer/pixel, 0.4385965 micrometer/pixel, 0.415 micrometer/pixel, 0.3333333 micrometer/pixel, 3.1746 micrometer/pixel, 10.0 micrometer/pixel, 0.3321064 micrometer/pixel, 0.3321063 micrometer/pixel, 0.6642131 micrometer/pixel, 0.326087 micrometer/pixel, 0.3322259 micrometer/pixel, 6.3573 micrometer/pixel, 5.0125 micrometer/pixel, 3.2051 micrometer/pixel, 2.6569 micrometer/pixel
Z scale
1 micrometer/slice, 1.2895111 micrometer/pixel, 2 micrometer/slice, 3.4529906 micrometer/pixel, 1 micrometer/pixel, NA
T scale
NA, 1 hour per time interval

Image Acquisition
Experiment type
-
Microscope type
-
Acquisition mode
-
Contrast method
-
Microscope model
-
Detector model
-
Objective model
-
Filter set
-

Related paper(s)

Keishi Kishimoto, Masaru Tamura, Michiru Nishita, Yasuhiro Minami, Akira Yamaoka, Takaya Abe, Mayo Shigeta, Mitsuru Morimoto (2018) Synchronized mesenchymal cell polarization and differentiation shape the formation of the murine trachea and esophagus., Nature communications, Volume 9, Number 1, pp. 2816

Published in 2018 Jul 19 (Electronic publication in July 19, 2018, midnight )

(Abstract) Tube morphogenesis is essential for internal-organ development, yet the mechanisms regulating tube shape remain unknown. Here, we show that different mechanisms regulate the length and diameter of the murine trachea. First, we found that trachea development progresses via sequential elongation and expansion processes. This starts with a synchronized radial polarization of smooth muscle (SM) progenitor cells with inward Golgi-apparatus displacement regulates tube elongation, controlled by mesenchymal Wnt5a-Ror2 signaling. This radial polarization directs SM progenitor cell migration toward the epithelium, and the resulting subepithelial morphogenesis supports tube elongation to the anteroposterior axis. This radial polarization also regulates esophageal elongation. Subsequently, cartilage development helps expand the tube diameter, which drives epithelial-cell reshaping to determine the optimal lumen shape for efficient respiration. These findings suggest a strategy in which straight-organ tubulogenesis is driven by subepithelial cell polarization and ring cartilage development.
(MeSH Terms)

Contact
Mitsuru Morimoto , RIKEN , Center for Biosystems Dynamics Research , Laboratory for Lung Development
Contributors

Dataset List of 139-Kishimoto-TracheaDev

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#
Dataset ID
Kind
Size
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Thumbnail Thumbnail for dataset FigureS12A_Foxg1CreSox9FF_E12.5_Dorsal
# 11643
Dataset Kind Image data
Dataset Size 126.2 KB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset FigureS12A_Foxg1CreSox9FF_E12.5_Ventral
# 11644
Dataset Kind Image data
Dataset Size 120.2 KB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset FigureS12A_Foxg1CreSox9FF_E14.5_Dorsal
# 11645
Dataset Kind Image data
Dataset Size 220.0 KB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset FigureS12A_Foxg1CreSox9FF_E14.5_Ventral
# 11646
Dataset Kind Image data
Dataset Size 213.9 KB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset FigureS12A_Foxg1CreSox9FF_E16.5_Dorsal
# 11647
Dataset Kind Image data
Dataset Size 371.7 KB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset FigureS12A_Foxg1CreSox9FF_E16.5_Ventral
# 11648
Dataset Kind Image data
Dataset Size 365.7 KB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset FigureS12A_Foxg1CreSox9FF_E18.5_Dorsal
# 11649
Dataset Kind Image data
Dataset Size 317.9 KB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset FigureS12A_Foxg1CreSox9FF_E18.5_Ventral
# 11650
Dataset Kind Image data
Dataset Size 311.9 KB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset FigureS13B_SHHCreR26RRG_E14.5
# 11651
Dataset Kind Image data
Dataset Size 642.9 KB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset FigureS13B_SHHCreR26RRG_E16.5
# 11652
Dataset Kind Image data
Dataset Size 722.4 KB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset FigureS13B_SHHCreR26RRG_E18.5
# 11653
Dataset Kind Image data
Dataset Size 585.1 KB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset FigureS15A_E14.5_CDH1
# 11654
Dataset Kind Image data
Dataset Size 47.7 KB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset FigureS15A_E14.5_CDH1_ZO1
# 11655
Dataset Kind Image data
Dataset Size 47.7 KB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset FigureS15A_E14.5_CTNNB1
# 11656
Dataset Kind Image data
Dataset Size 41.7 KB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset FigureS15A_E14.5_SCRIB
# 11657
Dataset Kind Image data
Dataset Size 41.6 KB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset FigureS15A_E16.5_CDH1
# 11658
Dataset Kind Image data
Dataset Size 41.7 KB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset FigureS15A_E16.5_CDH1_ZO1
# 11659
Dataset Kind Image data
Dataset Size 41.7 KB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset FigureS15A_E16.5_CTNNB1
# 11660
Dataset Kind Image data
Dataset Size 41.6 KB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset FigureS15A_E16.5_SCRIB
# 11661
Dataset Kind Image data
Dataset Size 41.6 KB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset FigureS15A_E18.5_CDH1
# 11662
Dataset Kind Image data
Dataset Size 41.7 KB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset FigureS15A_E18.5_CDH1_ZO1
# 11663
Dataset Kind Image data
Dataset Size 41.7 KB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset FigureS15A_E18.5_CTNNB1
# 11664
Dataset Kind Image data
Dataset Size 41.7 KB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset FigureS15A_E18.5_SCRIB
# 11665
Dataset Kind Image data
Dataset Size 41.6 KB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset FigureS15B_E14.5_atubulin
# 11666
Dataset Kind Image data
Dataset Size 47.7 KB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset FigureS15B_E14.5_Factin
# 11667
Dataset Kind Image data
Dataset Size 192.3 KB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset FigureS15B_E14.5_pMLC2
# 11668
Dataset Kind Image data
Dataset Size 41.7 KB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset FigureS15B_E14.5_ppMLC2
# 11669
Dataset Kind Image data
Dataset Size 41.7 KB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset FigureS15B_E16.5_atubulin
# 11670
Dataset Kind Image data
Dataset Size 41.6 KB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset FigureS15B_E16.5_Factin
# 11671
Dataset Kind Image data
Dataset Size 192.3 KB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset FigureS15B_E16.5_pMLC2
# 11672
Dataset Kind Image data
Dataset Size 41.7 KB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset FigureS15B_E16.5_ppMLC2
# 11673
Dataset Kind Image data
Dataset Size 41.7 KB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset FigureS15B_E18.5_atubulin
# 11674
Dataset Kind Image data
Dataset Size 24.6 KB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset FigureS15B_E18.5_Factin
# 11675
Dataset Kind Image data
Dataset Size 192.3 KB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset FigureS15B_E18.5_pMLC2
# 11676
Dataset Kind Image data
Dataset Size 41.7 KB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset FigureS15B_E18.5_ppMLC2
# 11677
Dataset Kind Image data
Dataset Size 41.7 KB
4D view
SSBD:OMERO
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