Summary of 114-Shiura-MouseEmbryoDyn
SSBD:database
SSBD:database URL
SSBD:repository
SSBD:repository URL
Title
RNA-FISH and immunofluorescence images of Xist/Tsix expression during peri-implantation embryoic development using whole-mount 3D RNA-FISH
Description
-
Release date
2019-11-20
Updated date
-
License
CC BY
Kind
Image data
based on Experiment
Number of Datasets
179
( Image datasets: 179,
Quantitative data datasets: 0 )
Size of Datasets
14.3 GB
( Image datasets: 14.3 GB,
Quantitative data datasets: 0 bytes )
Organism(s)
Mus musculus
Gene symbol(s)
Lamp2, Pkg1, Tsix, Xist
Protein name(s)
CDX2, GATA6, NANOG, POU5F1
Datatype
X chromosome inactivation (XCI) dynamics
Molecular Function (MF)
Biological Process (BP)
dosage compensation by inactivation of X chromosome, gene expression
Cellular Component (CC)
necleus
Biological Imaging Method
-
XYZ Scale
XY: 0.2197266 micrometer/pixel, Z: 0.7 micrometer/slice, XY: 0.1757813 micrometer/pixel, Z: 0.7 micrometer/slice, XY: 0.2075665 micrometer/pixel, Z: 0.8 micrometer/slice, XY: 0.2372188 micrometer/pixel, Z: NA, XY: 0.2767553 micrometer/pixel, Z: 0.8 micrometer/slice, XY: 0.1660532 micrometer/pixel, Z: 0.8 micrometer/slice, XY: 0.1845035 micrometer/pixel, Z: 0.8 micrometer/slice, XY: 0.2372188 micrometer/pixel, Z: 0.8 micrometer/slice, XY: 0.2485922 micrometer/pixel, Z: 0.7 micrometer/slice, XY: 0.1660532 micrometer/pixel, Z: NA
T scale
-
Image Acquisition
Experiment type
Immunofluorescence
Microscope type
ConfocalMicroscope
Acquisition mode
LaserScanningConfocalMicroscopy
Contrast method
Fluorescence
Microscope model
-
Detector model
-
Objective model
-
Filter set
-
Related paper(s)
Contact
Kuniya Abe, Hirosuke Shiura
, RIKEN
, BioResource Research Center
, Technology & Development Team for Mammalian Genome Dynamics,
Contributors
Hirosuke Shiura, Kuniya Abe
Dataset List of 114-Shiura-MouseEmbryoDyn
Thumbnail
#
Dataset ID
Kind
Size
4D View
SSBD:OMERO
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Thumbnail
#
4547
Datast ID
Fig2a_E4.0_2
Dataset Kind
Image data
Dataset Size
58.6 MB
4D view
SSBD:OMERO
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Thumbnail
#
4548
Datast ID
Fig2a_E4.0_3
Dataset Kind
Image data
Dataset Size
52.1 MB
4D view
SSBD:OMERO
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Thumbnail
#
4549
Datast ID
Fig2a_E4.0_4
Dataset Kind
Image data
Dataset Size
66.4 MB
4D view
SSBD:OMERO
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Thumbnail
#
4550
Datast ID
Fig2a_E4.0_5
Dataset Kind
Image data
Dataset Size
58.6 MB
4D view
SSBD:OMERO
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Thumbnail
#
4551
Datast ID
Fig2a_E4.25_1
Dataset Kind
Image data
Dataset Size
84.5 MB
4D view
SSBD:OMERO
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Thumbnail
#
4552
Datast ID
Fig2a_E4.25_2
Dataset Kind
Image data
Dataset Size
87.1 MB
4D view
SSBD:OMERO
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Thumbnail
#
4553
Datast ID
Fig2a_E4.25_3
Dataset Kind
Image data
Dataset Size
79.3 MB
4D view
SSBD:OMERO
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Thumbnail
#
4554
Datast ID
Fig2a_E4.25_4
Dataset Kind
Image data
Dataset Size
71.6 MB
4D view
SSBD:OMERO
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Thumbnail
#
4555
Datast ID
Fig2a_E4.50_1
Dataset Kind
Image data
Dataset Size
62.5 MB
4D view
SSBD:OMERO
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Thumbnail
#
4556
Datast ID
Fig2a_E4.50_2
Dataset Kind
Image data
Dataset Size
65.1 MB
4D view
SSBD:OMERO
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Thumbnail
#
4557
Datast ID
Fig2a_E4.50_3
Dataset Kind
Image data
Dataset Size
49.5 MB
4D view
SSBD:OMERO
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Thumbnail
#
4558
Datast ID
Fig2a_E4.50_4
Dataset Kind
Image data
Dataset Size
62.5 MB
4D view
SSBD:OMERO
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Thumbnail
#
4559
Datast ID
Fig2a_E4.75_1
Dataset Kind
Image data
Dataset Size
85.8 MB
4D view
SSBD:OMERO
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Thumbnail
#
4560
Datast ID
Fig2a_E4.75_2
Dataset Kind
Image data
Dataset Size
100.1 MB
4D view
SSBD:OMERO
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Thumbnail
#
4561
Datast ID
Fig2a_E4.75_3
Dataset Kind
Image data
Dataset Size
101.4 MB
4D view
SSBD:OMERO
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Thumbnail
#
4562
Datast ID
Fig2a_E5.0_1
Dataset Kind
Image data
Dataset Size
117.0 MB
4D view
SSBD:OMERO
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Thumbnail
#
4563
Datast ID
Fig2a_E5.0_2
Dataset Kind
Image data
Dataset Size
107.9 MB
4D view
SSBD:OMERO
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Thumbnail
#
4564
Datast ID
Fig2a_E5.0_3
Dataset Kind
Image data
Dataset Size
109.2 MB
4D view
SSBD:OMERO
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Thumbnail
#
4565
Datast ID
Fig2a_E5.0_4
Dataset Kind
Image data
Dataset Size
105.3 MB
4D view
SSBD:OMERO
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Thumbnail
#
4566
Datast ID
Fig2a_E5.0_5
Dataset Kind
Image data
Dataset Size
114.4 MB
4D view
SSBD:OMERO
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Thumbnail
#
4567
Datast ID
Fig2a_E5.25_1
Dataset Kind
Image data
Dataset Size
69.0 MB
4D view
SSBD:OMERO
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Thumbnail
#
4568
Datast ID
Fig2a_E5.25_2
Dataset Kind
Image data
Dataset Size
117.0 MB
4D view
SSBD:OMERO
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Thumbnail
#
4569
Datast ID
Fig2a_E5.25_3
Dataset Kind
Image data
Dataset Size
128.6 MB
4D view
SSBD:OMERO
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Thumbnail
#
4570
Datast ID
Fig2a_E5.25_4
Dataset Kind
Image data
Dataset Size
122.2 MB
4D view
SSBD:OMERO
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Thumbnail
#
4571
Datast ID
Fig2a_E5.50_1
Dataset Kind
Image data
Dataset Size
129.9 MB
4D view
SSBD:OMERO
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Thumbnail
#
4572
Datast ID
Fig2a_E5.50_2
Dataset Kind
Image data
Dataset Size
129.9 MB
4D view
SSBD:OMERO
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Thumbnail
#
4573
Datast ID
Fig2a_E5.50_3
Dataset Kind
Image data
Dataset Size
129.9 MB
4D view
SSBD:OMERO
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Thumbnail
#
4574
Datast ID
Fig2a_E5.50_4
Dataset Kind
Image data
Dataset Size
124.8 MB
4D view
SSBD:OMERO
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Thumbnail
#
4575
Datast ID
Fig2b_E3.50_1
Dataset Kind
Image data
Dataset Size
78.1 MB
4D view
SSBD:OMERO
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Thumbnail
#
4576
Datast ID
Fig2b_E3.50_2
Dataset Kind
Image data
Dataset Size
104.0 MB
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SSBD:OMERO
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Thumbnail
#
4577
Datast ID
Fig2b_E3.50_3
Dataset Kind
Image data
Dataset Size
62.5 MB
4D view
SSBD:OMERO
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Thumbnail
#
4578
Datast ID
Fig2b_E3.50_4
Dataset Kind
Image data
Dataset Size
93.6 MB
4D view
SSBD:OMERO
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Thumbnail
#
4579
Datast ID
Fig2b_E3.75_1
Dataset Kind
Image data
Dataset Size
18.4 MB
4D view
SSBD:OMERO
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Thumbnail
#
4580
Datast ID
Fig2b_E3.75_2
Dataset Kind
Image data
Dataset Size
88.4 MB
4D view
SSBD:OMERO
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Thumbnail
#
4581
Datast ID
Fig2b_E3.75_3
Dataset Kind
Image data
Dataset Size
88.4 MB
4D view
SSBD:OMERO
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Thumbnail
#
4582
Datast ID
Fig2b_E3.75_4
Dataset Kind
Image data
Dataset Size
14.5 MB
4D view
SSBD:OMERO
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Thumbnail
#
4583
Datast ID
Fig2b_E3.75_5
Dataset Kind
Image data
Dataset Size
85.8 MB
4D view
SSBD:OMERO
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Thumbnail
#
4584
Datast ID
Fig2b_E3.75_6
Dataset Kind
Image data
Dataset Size
110.5 MB
4D view
SSBD:OMERO
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Thumbnail
#
4585
Datast ID
Fig2b_E4.0_1
Dataset Kind
Image data
Dataset Size
83.2 MB
4D view
SSBD:OMERO
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Thumbnail
#
4586
Datast ID
Fig2b_E4.0_2
Dataset Kind
Image data
Dataset Size
81.9 MB
4D view
SSBD:OMERO
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Thumbnail
#
4587
Datast ID
Fig2b_E4.0_3
Dataset Kind
Image data
Dataset Size
72.9 MB
4D view
SSBD:OMERO
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Thumbnail
#
4588
Datast ID
Fig2b_E4.25_1
Dataset Kind
Image data
Dataset Size
85.8 MB
4D view
SSBD:OMERO
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Thumbnail
#
4589
Datast ID
Fig2b_E4.25_2
Dataset Kind
Image data
Dataset Size
85.8 MB
4D view
SSBD:OMERO
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Thumbnail
#
4590
Datast ID
Fig2b_E4.25_3
Dataset Kind
Image data
Dataset Size
92.3 MB
4D view
SSBD:OMERO
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Thumbnail
#
4591
Datast ID
Fig2b_E4.25_4
Dataset Kind
Image data
Dataset Size
122.2 MB
4D view
SSBD:OMERO
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Thumbnail
#
4592
Datast ID
Fig2b_E4.50_1
Dataset Kind
Image data
Dataset Size
104.0 MB
4D view
SSBD:OMERO
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Thumbnail
#
4593
Datast ID
Fig2b_E4.50_2
Dataset Kind
Image data
Dataset Size
109.2 MB
4D view
SSBD:OMERO
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Thumbnail
#
4594
Datast ID
Fig2b_E4.50_3
Dataset Kind
Image data
Dataset Size
74.2 MB
4D view
SSBD:OMERO
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Thumbnail
#
4595
Datast ID
Fig2b_E4.50_4
Dataset Kind
Image data
Dataset Size
93.6 MB
4D view
SSBD:OMERO
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Thumbnail
#
4596
Datast ID
Fig2b_E4.75_1
Dataset Kind
Image data
Dataset Size
69.0 MB
4D view
SSBD:OMERO
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