Summary of 114-Shiura-MouseEmbryoDyn
SSBD:database
SSBD:database URL
SSBD:repository
SSBD:repository URL
Title
RNA-FISH and immunofluorescence images of Xist/Tsix expression during peri-implantation embryoic development using whole-mount 3D RNA-FISH
Description
-
Release date
2019-11-20
Updated date
-
License
CC BY
Kind
Image data
based on Experiment
Number of Datasets
179
( Image datasets: 179,
Quantitative data datasets: 0 )
Size of Datasets
14.3 GB
( Image datasets: 14.3 GB,
Quantitative data datasets: 0 bytes )
Organism(s)
Mus musculus
Gene symbol(s)
Lamp2, Pkg1, Tsix, Xist
Protein name(s)
CDX2, GATA6, NANOG, POU5F1
Datatype
X chromosome inactivation (XCI) dynamics
Molecular Function (MF)
Biological Process (BP)
dosage compensation by inactivation of X chromosome, gene expression
Cellular Component (CC)
necleus
Biological Imaging Method
-
XYZ Scale
XY: 0.2197266 micrometer/pixel, Z: 0.7 micrometer/slice, XY: 0.1757813 micrometer/pixel, Z: 0.7 micrometer/slice, XY: 0.2075665 micrometer/pixel, Z: 0.8 micrometer/slice, XY: 0.2372188 micrometer/pixel, Z: NA, XY: 0.2767553 micrometer/pixel, Z: 0.8 micrometer/slice, XY: 0.1660532 micrometer/pixel, Z: 0.8 micrometer/slice, XY: 0.1845035 micrometer/pixel, Z: 0.8 micrometer/slice, XY: 0.2372188 micrometer/pixel, Z: 0.8 micrometer/slice, XY: 0.2485922 micrometer/pixel, Z: 0.7 micrometer/slice, XY: 0.1660532 micrometer/pixel, Z: NA
T scale
-
Image Acquisition
Experiment type
Immunofluorescence
Microscope type
ConfocalMicroscope
Acquisition mode
LaserScanningConfocalMicroscopy
Contrast method
Fluorescence
Microscope model
-
Detector model
-
Objective model
-
Filter set
-
Related paper(s)
Contact
Kuniya Abe, Hirosuke Shiura
, RIKEN
, BioResource Research Center
, Technology & Development Team for Mammalian Genome Dynamics,
Contributors
Hirosuke Shiura, Kuniya Abe
Dataset List of 114-Shiura-MouseEmbryoDyn
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#
Dataset ID
Kind
Size
4D View
SSBD:OMERO
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Thumbnail
#
4647
Datast ID
FigS1a_E4.75_TE-ExE
Dataset Kind
Image data
Dataset Size
101.4 MB
4D view
SSBD:OMERO
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Thumbnail
#
4648
Datast ID
FigS1a_E5.0_ICM-Epi
Dataset Kind
Image data
Dataset Size
83.2 MB
4D view
SSBD:OMERO
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Thumbnail
#
4649
Datast ID
FigS1a_E5.0_PE-VE
Dataset Kind
Image data
Dataset Size
31.4 MB
4D view
SSBD:OMERO
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Thumbnail
#
4650
Datast ID
FigS1a_E5.0_TE-ExE
Dataset Kind
Image data
Dataset Size
31.4 MB
4D view
SSBD:OMERO
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Thumbnail
#
4651
Datast ID
FigS1a_E5.25_ICM-Epi
Dataset Kind
Image data
Dataset Size
83.2 MB
4D view
SSBD:OMERO
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Thumbnail
#
4652
Datast ID
FigS1a_E5.25_PE-VE
Dataset Kind
Image data
Dataset Size
83.2 MB
4D view
SSBD:OMERO
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Thumbnail
#
4653
Datast ID
FigS1a_E5.25_TE-ExE
Dataset Kind
Image data
Dataset Size
1.5 MB
4D view
SSBD:OMERO
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Thumbnail
#
4654
Datast ID
FigS1a_E5.50_ICM-Epi
Dataset Kind
Image data
Dataset Size
104.0 MB
4D view
SSBD:OMERO
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Thumbnail
#
4655
Datast ID
FigS1a_E5.50_PE-VE
Dataset Kind
Image data
Dataset Size
129.9 MB
4D view
SSBD:OMERO
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Thumbnail
#
4656
Datast ID
FigS1a_E5.50_TE-ExE
Dataset Kind
Image data
Dataset Size
129.9 MB
4D view
SSBD:OMERO
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Thumbnail
#
4657
Datast ID
FigS1b_NANOG_GATA6_E4.0
Dataset Kind
Image data
Dataset Size
62.5 MB
4D view
SSBD:OMERO
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Thumbnail
#
4658
Datast ID
FigS2_Lamp2_1
Dataset Kind
Image data
Dataset Size
153.6 MB
4D view
SSBD:OMERO
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Thumbnail
#
4659
Datast ID
FigS2_Lamp2_2
Dataset Kind
Image data
Dataset Size
174.1 MB
4D view
SSBD:OMERO
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Thumbnail
#
4660
Datast ID
FigS2_Lamp2_3
Dataset Kind
Image data
Dataset Size
143.3 MB
4D view
SSBD:OMERO
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Thumbnail
#
4661
Datast ID
FigS2_Pgk1_1
Dataset Kind
Image data
Dataset Size
143.4 MB
4D view
SSBD:OMERO
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Thumbnail
#
4662
Datast ID
FigS2_Pgk1_2
Dataset Kind
Image data
Dataset Size
143.4 MB
4D view
SSBD:OMERO
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Thumbnail
#
4663
Datast ID
FigS3a_E5.25_1
Dataset Kind
Image data
Dataset Size
83.2 MB
4D view
SSBD:OMERO
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Thumbnail
#
4664
Datast ID
FigS3a_E5.25_2
Dataset Kind
Image data
Dataset Size
84.5 MB
4D view
SSBD:OMERO
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Thumbnail
#
4665
Datast ID
FigS3a_E5.25_3
Dataset Kind
Image data
Dataset Size
91.0 MB
4D view
SSBD:OMERO
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Thumbnail
#
4666
Datast ID
FigS3a_E5.50_1
Dataset Kind
Image data
Dataset Size
105.3 MB
4D view
SSBD:OMERO
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Thumbnail
#
4667
Datast ID
FigS3a_E5.50_2
Dataset Kind
Image data
Dataset Size
105.3 MB
4D view
SSBD:OMERO
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Thumbnail
#
4668
Datast ID
FigS3a_E5.50_3
Dataset Kind
Image data
Dataset Size
105.3 MB
4D view
SSBD:OMERO
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Thumbnail
#
4669
Datast ID
FigS3a_E5.50_4
Dataset Kind
Image data
Dataset Size
104.0 MB
4D view
SSBD:OMERO
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Thumbnail
#
4670
Datast ID
FigS3b_E5.5
Dataset Kind
Image data
Dataset Size
104.0 MB
4D view
SSBD:OMERO
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Thumbnail
#
4671
Datast ID
FigS3c_E5.5
Dataset Kind
Image data
Dataset Size
104.0 MB
4D view
SSBD:OMERO
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Thumbnail
#
4672
Datast ID
FigS4a_E5.5
Dataset Kind
Image data
Dataset Size
100.1 MB
4D view
SSBD:OMERO
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Thumbnail
#
4673
Datast ID
FigS4b_E5.5
Dataset Kind
Image data
Dataset Size
100.1 MB
4D view
SSBD:OMERO
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Thumbnail
#
4674
Datast ID
VideoS1_E5.5
Dataset Kind
Image data
Dataset Size
105.3 MB
4D view
SSBD:OMERO
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Thumbnail
#
4675
Datast ID
VideoS2_E3.5
Dataset Kind
Image data
Dataset Size
93.6 MB
4D view
SSBD:OMERO
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