Summary of 37-Arata-MolDynPar2

SSBD:database
SSBD:database URL
Title
-
Description
-
Relase date
2017-10-03
Updated date
2020-02-03
License
CC BY
Kind
Quantitative data, Image data based on Experiment
Number of Datasets
6 ( Image datasets: 3, Quantitative data datasets: 3 )
Size of Datasets
1.5 GB ( Image datasets: 1.5 GB, Quantitative data datasets: 32.6 MB )

Organism(s)
C. elegans
Gene symbol(s)
pkc-3
Protein name(s)
PAR-2
Protein tag(s)
GFP

Datatype
single molecule dynamics
Molecular Function (MF)
Biological Process (BP)
cellular protein localization
Cellular Component (CC)
-
Biological Imaging Method
-
XYZ Scale
XY: 0.0667 micrometer/pixel, Z: NA
T scale
0.05 second for each time interval

Image Acquisition
Experiment type
TimeLapse
Microscope type
ConfocalMicroscope
Acquisition mode
TIRF
Contrast method
Fluorescence
Microscope model
Nikon TE2000
Detector model
Hamamatsu Photonics ImagEM
Objective model
Nikon Apo TIRF 60X/1.49
Filter set
Dichroic mirror: DM495 Nikon, Emission filter: BA500-545 Nikon

Related paper(s)

Yukinobu Arata, Michio Hiroshima, Chan-Gi Pack, Ravikrishna Ramanujam, Fumio Motegi, Kenichi Nakazato, Yuki Shindo, Paul W Wiseman, Hitoshi Sawa, Tetsuya J Kobayashi, Hugo B Brandao, Tatsuo Shibata, Yasushi Sako (2016) Cortical Polarity of the RING Protein PAR-2 Is Maintained by Exchange Rate Kinetics at the Cortical-Cytoplasmic Boundary., Cell reports, Volume 16, Number 8, pp. 2156-2168

Published in 2016 Aug 23 (Electronic publication in Aug. 11, 2016, midnight )

(Abstract) Cell polarity arises through the spatial segregation of polarity regulators. PAR proteins are polarity regulators that localize asymmetrically to two opposing cortical domains. However, it is unclear how the spatially segregated PAR proteins interact to maintain their mutually exclusive partitioning. Here, single-molecule detection analysis in Caenorhabditis elegans embryos reveals that cortical PAR-2 diffuses only short distances, and, as a result, most PAR-2 molecules associate and dissociate from the cortex without crossing into the opposing domain. Our results show that cortical PAR-2 asymmetry is maintained by the local exchange reactions that occur at the cortical-cytoplasmic boundary. Additionally, we demonstrate that local exchange reactions are sufficient to maintain cortical asymmetry in a parameter-free mathematical model. These findings suggest that anterior and posterior PAR proteins primarily interact through the cytoplasmic pool and not via cortical diffusion.
(MeSH Terms)

Contact
Yukinobu Arata, Yasushi Sako , RIKEN , Wako , Cellular Informatics Laboratory
Contributors
Yukinobu Arata, Michio Hiroshima, Chan-Gi Pack, Ravikrishna Ramanujam, Fumio Motegi, Kenichi Nakazato, Yuki Shindo, Paul W. Wiseman, Hitoshi Sawa, Tetsuya J. Kobayashi, Hugo B. Brandão, Tatsuo Shibata, Yasushi Sako


Dataset List of 37-Arata-MolDynPar2

#
Dataset ID
Kind
Size
4D View
SSBD:OMERO
Download BDML
Download Images
# 1004
Datast ID wtPAR-2
Dataset Kind Image data
Dataset Size 504.2 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

# 1005
Datast ID wtPAR-2
Dataset Kind Quantitative data
Dataset Size 5.8 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

# 1006
Datast ID wtPAR-2pkc-3
Dataset Kind Image data
Dataset Size 504.2 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

# 1007
Datast ID wtPAR-2pkc-3
Dataset Kind Quantitative data
Dataset Size 5.2 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

# 1008
Datast ID pmPAR-2
Dataset Kind Image data
Dataset Size 504.2 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

# 1009
Datast ID pmPAR-2
Dataset Kind Quantitative data
Dataset Size 5.3 MB
4D view
SSBD:OMERO
Download BDML
Download Image data