Detail of pmPAR-2



Project
Title
BDML file of the PAR-2 trajectories obtained from time-lapse semi-TIRF microscopy images of fluorescent particles of GFP::phospho-mimicPAR-2 in a C. elegans wild-type embryo
Description
NA
Release, Updated
2017-10-03,
2020-02-03
License
CC BY
Kind
Quantitative data based on Experiment
File Formats
Data size
5.3 MB

Organism
C. elegans ( NCBI:txid6239 )
Strain(s)
-
Cell Line
-

Datatype
single molecule dynamics
Molecular Function (MF)
Biological Process (BP)
cellular protein localization ( GO:0034613 )
Cellular Component (CC)
-
Biological Imaging Method
XYZ Scale
XY: 0.0667 micrometer/pixel, Z: NA
T scale
0.05 second for each time interval

Image Acquisition
Experiment type
TimeLapse
Microscope type
ConfocalMicroscope
Acquisition mode
TIRF
Contrast method
Fluorescence
Microscope model
Nikon TE2000
Detector model
Hamamatsu Photonics ImagEM
Objective model
Nikon Apo TIRF 60X/1.49
Filter set

Summary of Methods
The original move of pmPAR-2 (tiff format) is rotated at 135 degree and processed through Rolling Ball and Kalman filters to obtain pmPAR-2_RBKL.avi (Movie S3). The PAR-2 trajectories (xlsx file) were obtained from the avi file. Kalman filter slightly reduced the diffusion coefficient.
Related paper(s)

Yukinobu Arata, Michio Hiroshima, Chan-Gi Pack, Ravikrishna Ramanujam, Fumio Motegi, Kenichi Nakazato, Yuki Shindo, Paul W Wiseman, Hitoshi Sawa, Tetsuya J Kobayashi, Hugo B Brandao, Tatsuo Shibata, Yasushi Sako (2016) Cortical Polarity of the RING Protein PAR-2 Is Maintained by Exchange Rate Kinetics at the Cortical-Cytoplasmic Boundary., Cell reports, Volume 16, Number 8, pp. 2156-2168

Published in 2016 Aug 23 (Electronic publication in Aug. 11, 2016, midnight )

(Abstract) Cell polarity arises through the spatial segregation of polarity regulators. PAR proteins are polarity regulators that localize asymmetrically to two opposing cortical domains. However, it is unclear how the spatially segregated PAR proteins interact to maintain their mutually exclusive partitioning. Here, single-molecule detection analysis in Caenorhabditis elegans embryos reveals that cortical PAR-2 diffuses only short distances, and, as a result, most PAR-2 molecules associate and dissociate from the cortex without crossing into the opposing domain. Our results show that cortical PAR-2 asymmetry is maintained by the local exchange reactions that occur at the cortical-cytoplasmic boundary. Additionally, we demonstrate that local exchange reactions are sufficient to maintain cortical asymmetry in a parameter-free mathematical model. These findings suggest that anterior and posterior PAR proteins primarily interact through the cytoplasmic pool and not via cortical diffusion.
(MeSH Terms)

Contact
Yukinobu Arata, Yasushi Sako , RIKEN , Wako , Cellular Informatics Laboratory
Contributors
Yukinobu Arata, Michio Hiroshima, Chan-Gi Pack, Ravikrishna Ramanujam, Fumio Motegi, Kenichi Nakazato, Yuki Shindo, Paul W. Wiseman, Hitoshi Sawa, Tetsuya J. Kobayashi, Hugo B. Brandão, Tatsuo Shibata, Yasushi Sako

Local ID
pmPAR-2
BDML ID
1f7a35ca-88b2-4225-ab1e-b02e23feccca
BDML/BD5
External Link
Source