Detail of ManualAnnotation_D1BN_woTM_G
Project
SSBD:Repository
Title
BDML file for manual annotation data of anatomical regions (isocortex, olfactory area, hippocampal formation,erebral nuclei, interbrain, midbrain, hindbrain, and cerebellum) for 10 images of P8 mouse brains (D1BN_woTM_G dataset) that was not injected TM (woTM) and was visualied for membrane-localized GFP reporter (G)
Description
manual annotation data of anatomical regions (isocortex, olfactory area, hippocampal formation,erebral nuclei, interbrain, midbrain, hindbrain, and cerebellum) for 10 images of P8 mouse brains (D1BN_woTM_G dataset) that was not injected TM (woTM) and was visualied for membrane-localized GFP reporter (G)
Release, Updated
2023-05-09,
2023-05-29
2023-05-29
Errata in Project
2023/05/29 All BDML/BD5 data was updated cause of some format error in BD5
License
CC BY
Kind
Quantitative data
based on Experiment
, related Image data -
D1BN_woTM_G
File Formats
BDML/BD5
Data size
28.8 MB
Organism
Mus musculus
(
NCBI:txid10090
)
Strain(s)
C57BL/6 Neurod1^{CreER}(D1B); Tau^{mGFP-nLacZ}
Cell Line
-
Datatype
-
Molecular Function (MF)
Biological Process (BP)
nervous system development
(
GO:0007399
)
Cellular Component (CC)
plasma membrane
(
GO:0005886
)
,
neuron projection
(
GO:0043005
)
Biological Imaging Method
bright-field microscopy
(
Fbbi:00000243
)
chemically fixed tissue ( Fbbi:00000002 )
cryostat-sectioned tissue ( Fbbi:00000027 )
horseradish peroxidase ( Fbbi:00000138 )
chemically fixed tissue ( Fbbi:00000002 )
cryostat-sectioned tissue ( Fbbi:00000027 )
horseradish peroxidase ( Fbbi:00000138 )
X scale
1.0 micrometer/pixel
Y scale
1.0 micrometer/pixel
Z scale
20 micrometer/slice
T scale
-
Image Acquisition
Experiment type
-
Microscope type
-
Acquisition mode
-
Contrast method
-
Microscope model
-
Detector model
-
Objective model
-
Filter set
-
Summary of Methods
See details in Kawabata H, et. al. (2023) ICBET2023
Related paper(s)
Contact
Yukako Tohsato
, Ritsumeikan University
, Faculty of Information Science and Engineering
, Laboratory of compubational biology
Contributors
Hiroto Kawabata, Yuki Shimojo, Tatsumi Hirata, Yukako Tohsato
Local ID
ManualAnnotation_D1BN_woTM_G
BDML ID
3df91620-ff03-40ee-abbc-7ec73addca5f
BDML/BD5
Database Link
Source