Summary of 12-Takayama-Oocyte


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Title
-
Description
-
Release date
2016-10-03
Updated date
2020-02-03
License
CC BY-NC-SA
Kind
Image data, Quantitative data based on Experiment
Number of Datasets
238 ( Image datasets: 119, Quantitative data datasets: 119 )
Size of Datasets
8.4 GB ( Image datasets: 4.7 GB, Quantitative data datasets: 3.7 GB )

Organism(s)
Caenorhabditis elegans
Gene symbol(s)
fog-2, him-5, og-2, spe-11(hc77), spe-11(hc88), spe-42, spe-9(hc52), spe-9(hc88), trp-3, trp-3(sy693), trp-3(tn1233), yokSi3, yokSi5, yokSi6, yokSi7

Datatype
oocyte shape dynamics
Molecular Function (MF)
Biological Process (BP)
egg activation
Cellular Component (CC)
cytoplasm
Biological Imaging Method
-
XYZ Scale
XY: 0.435 micrometer/pixel, Z: 0 micrometer/slice, XY: 0.417 micrometer/pixel, Z: 0 micrometer/slice
T scale
5 second for each time interval, 1.6 second for each time interval, 1.014 second for each time interval

Image Acquisition
Experiment type
-
Microscope type
-
Acquisition mode
-
Contrast method
-
Microscope model
-
Detector model
-
Objective model
-
Filter set
-

Related paper(s)

Jun Takayama, Shuichi Onami (2016) The Sperm TRP-3 Channel Mediates the Onset of a Ca(2+) Wave in the Fertilized C. elegans Oocyte., Cell reports, Volume 15, Number 3, pp. 625-637

Published in 2016 Apr 19 (Electronic publication in April 7, 2016, midnight )

(Abstract) Sperm induce Ca(2+) waves in the fertilized egg by introducing soluble factors or by surface interactions, which activate egg Ca(2+) channels. Involvement of sperm Ca(2+) channels is predicted by the conduit model; however, this model has not been validated. In Caenorhabditis elegans, the sperm-specific TRP family Ca(2+) channel TRP-3 mediates sperm-oocyte fusion. Here, using high-speed in vivo imaging and image analyses, we show that sperm induce an immediate local Ca(2+) rise followed by a Ca(2+) wave in fertilized C. elegans oocytes. Oocytes fertilized by rare trp-3 escaper sperm showed a lack of local rise and a delay in onset of the Ca(2+) wave. Sperm Ca(2+) imaging suggests that the local rise is not due to the bolus introduction of stored Ca(2+). These results suggest that, along with its primary function in sperm-oocyte fusion, TRP-3 induces Ca(2+) waves in fertilized oocytes, consistent with the conduit model.
(MeSH Terms)

Contact
Shuichi Onami , RIKEN , Quantitative Biology Center , Laboratory for Developmental Dynamics
Contributors
Jun Takayama, Shuichi Onami

Dataset List of 12-Takayama-Oocyte

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#
Dataset ID
Kind
Size
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# 686
Datast ID Fig5G_TiE_140930-2
Dataset Kind Quantitative data
Dataset Size 38.8 MB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig5G_TiE_140930-2
# 687
Datast ID Fig5G_TiE_140930-2
Dataset Kind Image data
Dataset Size 19.0 MB
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SSBD:OMERO
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# 688
Datast ID Fig5G_TiE_140930-3
Dataset Kind Quantitative data
Dataset Size 33.8 MB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig5G_TiE_140930-3
# 689
Datast ID Fig5G_TiE_140930-3
Dataset Kind Image data
Dataset Size 13.8 MB
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SSBD:OMERO
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# 690
Datast ID Fig5G_TiE_140930-4
Dataset Kind Quantitative data
Dataset Size 39.0 MB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig5G_TiE_140930-4
# 691
Datast ID Fig5G_TiE_140930-4
Dataset Kind Image data
Dataset Size 20.7 MB
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SSBD:OMERO
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Thumbnail -
# 692
Datast ID Fig5G_TiE_140930-5
Dataset Kind Quantitative data
Dataset Size 37.2 MB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig5G_TiE_140930-5
# 693
Datast ID Fig5G_TiE_140930-5
Dataset Kind Image data
Dataset Size 18.8 MB
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SSBD:OMERO
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Thumbnail -
# 694
Datast ID Fig5G_TiE_140930-6
Dataset Kind Quantitative data
Dataset Size 43.4 MB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig5G_TiE_140930-6
# 695
Datast ID Fig5G_TiE_140930-6
Dataset Kind Image data
Dataset Size 18.2 MB
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SSBD:OMERO
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Thumbnail -
# 696
Dataset Kind Quantitative data
Dataset Size 28.7 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset FigS1A_DMRE_110722-1
# 697
Dataset Kind Image data
Dataset Size 15.0 MB
4D view
SSBD:OMERO
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Thumbnail -
# 698
Dataset Kind Quantitative data
Dataset Size 30.0 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset FigS1B_DMRE_110722-2
# 699
Dataset Kind Image data
Dataset Size 15.0 MB
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SSBD:OMERO
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Thumbnail -
# 700
Dataset Kind Quantitative data
Dataset Size 31.1 MB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset FigS1C_DMRE_110722-3
# 701
Dataset Kind Image data
Dataset Size 15.0 MB
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SSBD:OMERO
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Thumbnail -
# 702
Dataset Kind Quantitative data
Dataset Size 20.1 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset FigS1D_DMRE_140612-3
# 703
Dataset Kind Image data
Dataset Size 84.5 MB
4D view
SSBD:OMERO
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Thumbnail -
# 704
Dataset Kind Quantitative data
Dataset Size 18.8 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset FigS1D_DMRE_140612-4
# 705
Dataset Kind Image data
Dataset Size 84.5 MB
4D view
SSBD:OMERO
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Thumbnail -
# 706
Dataset Kind Quantitative data
Dataset Size 23.5 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset FigS1D_DMRE_140612-6
# 707
Dataset Kind Image data
Dataset Size 84.5 MB
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SSBD:OMERO
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Thumbnail -
# 708
Dataset Kind Quantitative data
Dataset Size 21.2 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset FigS1D_DMRE_140630-7
# 709
Dataset Kind Image data
Dataset Size 84.5 MB
4D view
SSBD:OMERO
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Thumbnail -
# 710
Dataset Kind Quantitative data
Dataset Size 21.0 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset FigS1D_DMRE_140707-1
# 711
Dataset Kind Image data
Dataset Size 84.5 MB
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SSBD:OMERO
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Thumbnail -
# 712
Dataset Kind Quantitative data
Dataset Size 21.1 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset FigS1D_DMRE_140707-4
# 713
Dataset Kind Image data
Dataset Size 84.5 MB
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SSBD:OMERO
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Thumbnail -
# 714
Dataset Kind Quantitative data
Dataset Size 9.9 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset FigS1E_DMRE_130404-1
# 715
Dataset Kind Image data
Dataset Size 5.0 MB
4D view
SSBD:OMERO
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Thumbnail -
# 716
Dataset Kind Quantitative data
Dataset Size 8.4 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset FigS1E_DMRE_130404-2
# 717
Dataset Kind Image data
Dataset Size 3.8 MB
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SSBD:OMERO
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Thumbnail -
# 718
Dataset Kind Quantitative data
Dataset Size 9.6 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset FigS1E_DMRE_130404-3
# 719
Dataset Kind Image data
Dataset Size 4.0 MB
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SSBD:OMERO
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Thumbnail -
# 720
Dataset Kind Quantitative data
Dataset Size 7.9 MB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset FigS1E_DMRE_130404-4
# 721
Dataset Kind Image data
Dataset Size 3.8 MB
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SSBD:OMERO
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Thumbnail -
# 722
Dataset Kind Quantitative data
Dataset Size 10.0 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset FigS1E_DMRE_130404-6
# 723
Dataset Kind Image data
Dataset Size 4.7 MB
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SSBD:OMERO
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Thumbnail -
# 724
Dataset Kind Quantitative data
Dataset Size 8.3 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset FigS1E_DMRE_130404-7
# 725
Dataset Kind Image data
Dataset Size 4.2 MB
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SSBD:OMERO
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Thumbnail -
# 726
Dataset Kind Quantitative data
Dataset Size 9.6 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset FigS1E_DMRE_140612-8
# 727
Dataset Kind Image data
Dataset Size 5.0 MB
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SSBD:OMERO
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Thumbnail -
# 728
Dataset Kind Quantitative data
Dataset Size 11.0 MB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset FigS1E_DMRE_140612-9
# 729
Dataset Kind Image data
Dataset Size 5.4 MB
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SSBD:OMERO
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Thumbnail -
# 730
Dataset Kind Quantitative data
Dataset Size 9.3 MB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset FigS1E_DMRE_140630-4
# 731
Dataset Kind Image data
Dataset Size 4.6 MB
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SSBD:OMERO
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Thumbnail -
# 732
Dataset Kind Quantitative data
Dataset Size 8.3 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset FigS1E_DMRE_140630-6
# 733
Dataset Kind Image data
Dataset Size 4.8 MB
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SSBD:OMERO
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Thumbnail -
# 734
Dataset Kind Quantitative data
Dataset Size 8.4 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset FigS1E_DMRE_140707-2
# 735
Dataset Kind Image data
Dataset Size 3.8 MB
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SSBD:OMERO
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