Summary of 72-Kyogoku-CytoplasmNucDyn


SSBD:database
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SSBD:repository
SSBD:repository URL

Title
Timelapse images and BDML file for quantitative information about the cytoplasmic size affecting nuclear dynamics during mouse oocytes meiosis
Description
-
Release date
2021-11-30
Updated date
-
License
CC BY
Kind
Image data based on Experiment
Number of Datasets
453 ( Image datasets: 453, Quantitative data datasets: 0 )
Size of Datasets
6.7 TB ( Image datasets: 6.7 TB, Quantitative data datasets: 0 bytes )

Organism(s)
Mus musculus
Gene symbol(s)
C-Mad2, Hec-1, Hec1
Protein name(s)
ACA, Aurora B/C, CENP-C, CENP-E, H2B, MCAK, Securin
Protein tag(s)
2mNeonGreen, EGFP, mCherry, mNeonGreen, mNeonGreen. mCherry

Datatype
-
Molecular Function (MF)
-
Biological Process (BP)
cytoplasm organization, nuclear envelope breakdown, mitotic cell cycle
Cellular Component (CC)
chromosome, kinetochore microtubule
Biological Imaging Method
time lapse microscopy, fluorescence microscopy
X scale
0.0527153 micrometer/pixel, 0.1037832 micrometer/pixel, 0.1037832 micrometer/pixel, 0.0922518 micrometer/pixel, 0.2075665 micrometer/pixel, 0.0691888 micrometer/pixel, 0.4151329 micrometer/pixel, 0.0415133 micrometer/pixel, 0.0638666 micrometer/pixel, 0.0593047 micrometer/pixel, 0.1383776 micrometer/pixel, 0.1186094 micrometer/pixel, 0.1660532 micrometer/pixel, 0.0830266 micrometer/pixel
Y scale
0.0527153 micrometer/pixel, 0.1037832 micrometer/pixel, 0.1037832 micrometer/pixel, 0.0922518 micrometer/pixel, 0.2075665 micrometer/pixel, 0.0691888 micrometer/pixel, 0.4151329 micrometer/pixel, 0.0415133 micrometer/pixel, 0.0638666 micrometer/pixel, 0.0593047 micrometer/pixel, 0.1383776 micrometer/pixel, 0.1186094 micrometer/pixel, 0.1660532 micrometer/pixel, 0.0830266 micrometer/pixel
Z scale
1 micrometer/slice, 4 micrometer/slice, 0.3791020 micrometer/slice, 0.5 micrometer/slice, 0.3125801 micrometer/slice, 1.5 micrometer/slice
T scale
2 minutes for each time interval, 3 minutes for each time interval, 6 minutes for each time interval, NA, 5 minutes for each time interval, 1 minute for each time interval

Image Acquisition
Experiment type
-
Microscope type
-
Acquisition mode
-
Contrast method
-
Microscope model
-
Detector model
-
Objective model
-
Filter set
-

Related paper(s)

Hirohisa Kyogoku, Tomoya S Kitajima (2017) Large Cytoplasm Is Linked to the Error-Prone Nature of Oocytes., Developmental cell, Volume 41, Number 3, pp. 287-298.e4

Published in 2017 May 8

(Abstract) Chromosome segregation during meiosis in oocytes is error prone. The uniquely large cytoplasmic size of oocytes, which provides support for embryogenesis after fertilization, might be a predisposing factor for meiotic errors. However, this hypothesis remains unproven. Here, we show that cytoplasmic size affects the functionality of the acentrosomal spindle. Artificially decreasing the cytoplasmic size in mouse oocytes allows the acentrosomal spindle poles to have a better-focused distribution of microtubule-organizing centers and to biorient chromosomes more efficiently, whereas enlargement of the cytoplasmic size has the opposite effects. Moreover, we found that the cytoplasmic size-dependent dilution of nuclear factors, including anaphase inhibitors that are preformed at the nuclear membrane, limits the spindle's capacity to prevent anaphase entry with misaligned chromosomes. The present study defines a large cytoplasmic volume as a cell-intrinsic feature linked to the error-prone nature of oocytes. This may represent a trade-off between meiotic fidelity and post-fertilization developmental competence.
(MeSH Terms)

Contact
Tomoya S. Kitajima , RIKEN , Center for Biosystems Dynamics Research , Laboratory for Chromosome Segregation
Contributors
NA

Dataset List of 72-Kyogoku-CytoplasmNucDyn

Thumbnail
#
Dataset ID
Kind
Size
4D View
SSBD:OMERO
Download BDML
Download Images
Thumbnail Thumbnail for dataset FigureS4_kinetochore_Hec1_20161104_Giant
# 6777
Dataset Kind Image data
Dataset Size 917.4 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset FigureS4_kinetochore_Hec1_20161106_EFcon
# 6778
Dataset Kind Image data
Dataset Size 551.7 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset FigureS4_kinetochore_Hec1_20161106_Giant
# 6779
Dataset Kind Image data
Dataset Size 866.2 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset FigureS4_kinetochore_MCAK_20170305_con
# 6780
Dataset Kind Image data
Dataset Size 246.2 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset FigureS4_kinetochore_MCAK_20170305_half
# 6781
Dataset Kind Image data
Dataset Size 178.5 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset FigureS4_kinetochore_MCAK_20170308_con
# 6782
Dataset Kind Image data
Dataset Size 695.4 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset FigureS4_kinetochore_MCAK_20170308_EFcon
# 6783
Dataset Kind Image data
Dataset Size 580.4 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset FigureS4_kinetochore_MCAK_20170308_Giant
# 6784
Dataset Kind Image data
Dataset Size 543.4 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset FigureS4_kinetochore_MCAK_20170308_half
# 6785
Dataset Kind Image data
Dataset Size 773.4 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset FigureS4_kinetochore_MCAK_20170309_con
# 6786
Dataset Kind Image data
Dataset Size 586.6 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset FigureS4_kinetochore_MCAK_20170309_doubled
# 6787
Dataset Kind Image data
Dataset Size 647.8 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset FigureS4_kinetochore_MCAK_20170309_EFcon
# 6788
Dataset Kind Image data
Dataset Size 549.6 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset FigureS4_kinetochore_MCAK_20170309_half
# 6789
Dataset Kind Image data
Dataset Size 835.0 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset FigureS4_kinetochore_MCAK_20170310_con
# 6790
Dataset Kind Image data
Dataset Size 1.2 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset FigureS4_kinetochore_MCAK_20170310_doubled
# 6791
Dataset Kind Image data
Dataset Size 666.4 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset FigureS4_kinetochore_MCAK_20170310_EFcon
# 6792
Dataset Kind Image data
Dataset Size 830.7 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset FigureS4_kinetochore_MCAK_20170310_half
# 6793
Dataset Kind Image data
Dataset Size 1.1 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset FigureS4_kinetochore_pS55_20161027_con
# 6794
Dataset Kind Image data
Dataset Size 1.4 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset FigureS4_kinetochore_pS55_20161027_half
# 6795
Dataset Kind Image data
Dataset Size 1.9 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset FigureS4_kinetochore_pS55_20161028_EFcon
# 6796
Dataset Kind Image data
Dataset Size 1.6 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset FigureS4_kinetochore_pS55_20161028_Giant
# 6797
Dataset Kind Image data
Dataset Size 1.7 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset FigureS4_kinetochore_pS55_20161031_con1
# 6798
Dataset Kind Image data
Dataset Size 976.1 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset FigureS4_kinetochore_pS55_20161031_con2
# 6799
Dataset Kind Image data
Dataset Size 578.2 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset FigureS4_kinetochore_pS55_20161031_half1
# 6800
Dataset Kind Image data
Dataset Size 756.9 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset FigureS4_kinetochore_pS55_20161031_half2
# 6801
Dataset Kind Image data
Dataset Size 418.5 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset FigureS4_kinetochore_pS55_20161104_EFcon
# 6802
Dataset Kind Image data
Dataset Size 869.5 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset FigureS4_kinetochore_pS55_20161104_Giant
# 6803
Dataset Kind Image data
Dataset Size 1.4 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset FigureS4_kinetochore_pS55_20161106_EFcon
# 6804
Dataset Kind Image data
Dataset Size 692.9 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset FigureS4_kinetochore_pS55_20161106_Giant
# 6805
Dataset Kind Image data
Dataset Size 1.2 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset FigureS5_2015_7_2
# 6806
Datast ID FigureS5_2015_7_2
Dataset Kind Image data
Dataset Size 110.8 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset FigureS5_2015_7_3
# 6807
Datast ID FigureS5_2015_7_3
Dataset Kind Image data
Dataset Size 50.8 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset FigureS5_2015_7_6
# 6808
Datast ID FigureS5_2015_7_6
Dataset Kind Image data
Dataset Size 48.5 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset FigureS5_2015_7_7
# 6809
Datast ID FigureS5_2015_7_7
Dataset Kind Image data
Dataset Size 90.0 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset FigureS5_2015_7_13
# 6810
Datast ID FigureS5_2015_7_13
Dataset Kind Image data
Dataset Size 73.9 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset FigureS5_2015_7_15
# 6811
Datast ID FigureS5_2015_7_15
Dataset Kind Image data
Dataset Size 108.5 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset FigureS5_2015_7_16
# 6812
Datast ID FigureS5_2015_7_16
Dataset Kind Image data
Dataset Size 113.1 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset FigureS6AB_20160224_EFcon1
# 6813
Dataset Kind Image data
Dataset Size 1.0 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset FigureS6AB_20160224_EFcon2
# 6814
Dataset Kind Image data
Dataset Size 1.5 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset FigureS6AB_20160224_Giant1
# 6815
Dataset Kind Image data
Dataset Size 1.5 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset FigureS6AB_20160224_Giant2
# 6816
Dataset Kind Image data
Dataset Size 1.7 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset FigureS6AB_20160225_con3_5h
# 6817
Dataset Kind Image data
Dataset Size 1.3 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset FigureS6AB_20160225_half3h
# 6818
Dataset Kind Image data
Dataset Size 1.1 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset FigureS6C_2014_4_23
# 6819
Dataset Kind Image data
Dataset Size 68.6 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset FigureS6C_2014_6_6
# 6820
Datast ID FigureS6C_2014_6_6
Dataset Kind Image data
Dataset Size 62.2 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset FigureS6C_2014_6_12
# 6821
Dataset Kind Image data
Dataset Size 68.6 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset FigureS6C_2014_6_18
# 6822
Dataset Kind Image data
Dataset Size 68.6 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset FigureS6C_2014_6_20
# 6823
Dataset Kind Image data
Dataset Size 68.6 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset FigureS6C_2014_6_27
# 6824
Dataset Kind Image data
Dataset Size 68.6 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset FigureS6C_2014_7_2
# 6825
Datast ID FigureS6C_2014_7_2
Dataset Kind Image data
Dataset Size 47.2 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset FigureS6C_2014_7_10
# 6826
Dataset Kind Image data
Dataset Size 68.1 GB
4D view
SSBD:OMERO
Download BDML
Download Image data