Summary of 451-Hitora-Neopetromin

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Title
The shape of vacuole and F-actin in tobacco BY-2 cells treated with neopetromin, a newly found peptide
Description
HPLC-MS analysis revealed the presence of an unreported peptide in the extract of the marine sponge Neopetrosia sp. Its structure was determined as a tripeptide, named neopetromin (1), composed of two tyrosine and one tryptophan residues with a heteroaromatic C−N cross-link between side chains. The absolute configuration of amino acids was determined using Marfey’s method after ozonolysis and hydrolysis of 1. Compound 1 promoted vacuole fragmentation in an actin- independent manner in tobacco BY-2 cells.
Release date
2025-11-28
Updated date
-
License
CC BY 4.0
Kind
Image data based on Experiment
Number of Datasets
6 ( Image datasets: 6, Quantitative data datasets: 0 )
Size of Datasets
619.2 MB ( Image datasets: 619.2 MB, Quantitative data datasets: 0 bytes )

Organism(s)
Nicotiana tabacum
Cell lines(s)
TBY-2 cell

Datatype
-
Molecular Function (MF)
-
Biological Process (BP)
negative regulation of actin filament polymerization
Cellular Component (CC)
vacuole, actin cytoskeleton
Biological Imaging Method
confocal microscopy
T scale
-

Image Acquisition
Experiment type
-
Microscope type
-
Acquisition mode
-
Contrast method
-
Microscope model
-
Detector model
-
Objective model
-
Filter set
-

Related paper(s)

Yuki Hitora, Ahmed H El-Desoky, Yusaku Sadahiro, Ai Sejiyama, Amiri Kinoshita, Yuji Ise, Esther D Angkouw, Remy E P Mangindaan, Takumi Higaki, Sachiko Tsukamoto (2024) Neopetromin, a Cyclic Tripeptide with a C-N Cross-Link, from the Marine Sponge Neopetrosia sp., That Causes Vacuole Fragmentation in Tobacco BY-2 Cells., Journal of natural products

Published in 2024 Mar 19 (Electronic publication in March 19, 2024, midnight )

(Abstract) HPLC-MS analysis revealed the presence of an unreported peptide in the extract of the marine sponge Neopetrosia sp. Its structure was determined as a tripeptide, named neopetromin (1), composed of two tyrosine and one tryptophan residues with a heteroaromatic C-N cross-link between side chains. The absolute configuration of amino acids was determined using Marfey's method after ozonolysis and hydrolysis of 1. Compound 1 promoted vacuole fragmentation in an actin-independent manner in tobacco BY-2 cells.

Contact
Sachiko Tsukamoto, Yuki Hitora , Kumamoto University, Kumamoto University , Department of Natural Medicines, Graduate School of Pharmaceutical Sciences, Department of Natural Medicines, Graduate School of Pharmaceutical Sciences , Department of Natural Medicines, Graduate School of Pharmaceutical Sciences, Department of Natural Medicines, Graduate School of Pharmaceutical Sciences
Contributors


Dataset List of 451-Hitora-Neopetromin

#
Dataset ID
Kind
Size
4D View
SSBD:OMERO
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# 13148
Datast ID Fig3_vacuol_cont
Dataset Kind Image data
Dataset Size 106.8 MB
4D view
SSBD:OMERO
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# 13149
Datast ID Fig3_vacuol_LatB
Dataset Kind Image data
Dataset Size 132.1 MB
4D view
SSBD:OMERO
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# 13150
Dataset Kind Image data
Dataset Size 116.1 MB
4D view
SSBD:OMERO
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# 13151
Datast ID Fig4_AF_cont
Dataset Kind Image data
Dataset Size 74.7 MB
4D view
SSBD:OMERO
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# 13152
Datast ID Fig4_AF_LatB
Dataset Kind Image data
Dataset Size 109.4 MB
4D view
SSBD:OMERO
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# 13153
Dataset Kind Image data
Dataset Size 80.1 MB
4D view
SSBD:OMERO
Download BDML
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