Summary of 41-Hirata-XChrHiC

SSBD:database
SSBD:database URL
Title
-
Description
-
Relase date
2017-10-03
Updated date
2018-11-15
License
CC BY-NC-SA
Kind
Quantitative data based on Experiment
Number of Datasets
11 ( Image datasets: 0, Quantitative data datasets: 11 )
Size of Datasets
3.9 MB ( Image datasets: 0 bytes, Quantitative data datasets: 3.9 MB )

Organism(s)
M. musculus
Gene symbol(s)
NA
Protein name(s)
NA

Datatype
chromosome structure
Molecular Function (MF)
Biological Process (BP)
-
Cellular Component (CC)
-
Biological Imaging Method
-
XYZ Scale
XYZ: 1 a.u.
T scale
-

Image Acquisition
Experiment type
Other
Microscope type
Other
Acquisition mode
Other
Contrast method
Other
Microscope model
-
Detector model
-
Objective model
-
Filter set
-

Related paper(s)

Yoshito Hirata, Arisa Oda, Kunihiro Ohta, Kazuyuki Aihara (2016) Three-dimensional reconstruction of single-cell chromosome structure using recurrence plots., Scientific reports, Volume 6, pp. 34982

Published in 2016 Oct 11 (Electronic publication in Oct. 11, 2016, midnight )

(Abstract) Single-cell analysis of the three-dimensional (3D) chromosome structure can reveal cell-to-cell variability in genome activities. Here, we propose to apply recurrence plots, a mathematical method of nonlinear time series analysis, to reconstruct the 3D chromosome structure of a single cell based on information of chromosomal contacts from genome-wide chromosome conformation capture (Hi-C) data. This recurrence plot-based reconstruction (RPR) method enables rapid reconstruction of a unique structure in single cells, even from incomplete Hi-C information.
(MeSH Terms)

Contact
Yoshito Hirata , University of Tokyo , Institute of Industrial Science
Contributors
Yoshito Hirata, Arisa Oda, Kunihiro Ohta, Kazuyuki Aihara


Dataset List of 41-Hirata-XChrHiC

#
Dataset ID
Kind
Size
4D View
SSBD:OMERO
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# 1025
Datast ID Fig4c_C1
Dataset Kind Quantitative data
Dataset Size 365.6 KB
4D view
SSBD:OMERO
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# 1026
Datast ID Fig4c_C2
Dataset Kind Quantitative data
Dataset Size 365.6 KB
4D view
SSBD:OMERO
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# 1027
Datast ID Fig4c_C3
Dataset Kind Quantitative data
Dataset Size 365.6 KB
4D view
SSBD:OMERO
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# 1028
Datast ID FigS2_C4
Dataset Kind Quantitative data
Dataset Size 365.6 KB
4D view
SSBD:OMERO
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# 1029
Datast ID FigS2_C5
Dataset Kind Quantitative data
Dataset Size 365.6 KB
4D view
SSBD:OMERO
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# 1030
Datast ID FigS2_C6
Dataset Kind Quantitative data
Dataset Size 365.6 KB
4D view
SSBD:OMERO
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# 1031
Datast ID FigS2_C7
Dataset Kind Quantitative data
Dataset Size 365.6 KB
4D view
SSBD:OMERO
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# 1032
Datast ID FigS2_C8
Dataset Kind Quantitative data
Dataset Size 365.6 KB
4D view
SSBD:OMERO
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# 1033
Datast ID FigS2_C9
Dataset Kind Quantitative data
Dataset Size 365.6 KB
4D view
SSBD:OMERO
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# 1034
Datast ID FigS2_C10
Dataset Kind Quantitative data
Dataset Size 365.6 KB
4D view
SSBD:OMERO
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# 1035
Datast ID Fig4c_E
Dataset Kind Quantitative data
Dataset Size 365.6 KB
4D view
SSBD:OMERO
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